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LotjaGi3g1v0129900.1

Overview

Field Value
Gene ID LotjaGi3g1v0129900
Transcript ID LotjaGi3g1v0129900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description NAC domain-containing protein, putative; TAIR: AT1G79580.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76; TrEMBL-Plants: tr|A2Q3I9|A2Q3I9_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi3g1v0129900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:16073362..16076850) extracted from Lotus japonicus Gifu genome v1.2.

GTAAATAAAATACAGTTTTTATATATTTCTGTGCCGATTCCTGGTTGTCAGTCCTTGTTTGTGAAGCTAGGATTTGCACT GATCCACACTTATCTCTCCCTCTGTCTCTCTCCCTCTCTCTTTCTTAAAACCCACGTCCGTGCCCTTGAAGCTAAGCAAC AGTGTAACCTAAGCCTCCTCCTTCTCTTTGTGTAGTTCTTTGTCTTCTTTCCTTTGTCCTGGAGGGATTCACTTTGCTTG TCACCAAAGGTTTGTGTACTGTTCTATTTGTGTCATCATAAACTTTACACTTTTCATAGTTGATCATCTTTTTGTTTGTT TTCTCTTGGCTTCTTTCATTTGTGACTTTATTTACATATTTGAAGAAACCTTTTTGGATCTTCAATTTAGTACTGCTTAA TTATGGCTCCAAACTCATTCTTCAATCATGAATTTAGCTTTCATAGCTCTTGTTTCAGATACACATGCATGTTTGGTTCA AACTCTCAGTTTTAAGAAGGAAGCAATGAAGAAGGGTTTTCATTCAACTTAATTAAAAATGATCAGTTATAGTTTTTTAC AAAGTAGCATACAAAATCATATAGAGACTGCTCACTTTTCCTTCTTTCTCCCTCATTTTTCCTTCTTATCTCTTTGGGGT TGTACTGAACCCTCTCCATGCAGACTCATGGCATGGCTATTTTGGCTTTTTGTTCAAGCAACATCATGGATATGGGGCAT ACATGTTCCTGTTTTTCTGCTGTGTGTAAGGATTTGTGTCCTAATATTCATAGATAGGTTGAGGGAAGCATGGACAGAAG TTCTTGTTATTGTTTTTGAAATTTGTTTCTAAGTCAAAGATCTTTTAGCATTTCAACATATCATTGAATAAGAGGTCTAG ATATTCTGAAACCGAACAGGTCAGATAAGTTTGGTAGCTTTTCTTTTTAGGATCTTGCTAGGGTTAGCTCAAAGATTCAG ATTTGCACGTGTCTAGAGACTTTTCCTACTATGCATGGAGATAGTAGTTAACCTATGATATCTAAAAGTCTTCCACTTTT TTTCTTTAATTCTGTTCCACACTAAATTTTGGTTACAACTAGAAATTTAGGAGTGAAGCTAGCTATGGTTTTGAACAAGA TTATATAATTATGAATTATCTTAATTCCTCGATCTCCTACTTTTTAGTCATAAATCAGCTTTTTGACAATGAAGAAGGAG ACCATGTGATCTCGAGATTATCAATCTCTGCCCACTTTATTTGAATTTCTACTTCATGAACTACTGAGAATGAAACTGTT TCGTATTTGCCTTGCAATAAGTCACAACCTTGAATTAATTAATATATTTTATTATTAATCAAATGAAAAGTATTCTAATA CATATAGATCTTTCTTCTTCTTTTTCTTCAGGTGGACGAATAAAAGAGCTGCAGACAGTACAGAATGATGCAGGGCAGTG GACAACTAGCAGTTCCTCCAGGGTTCAGGTTCCACCCTACAGATGAGGAGCTTCTGTACTATTACCTGAGGAAGAAGGTT TCTTATGAAGCTATTGATCTTGATGTCATAAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGGTACATA AAATATCCCTTCATTAATTGTTCAAATTATCTACTAAGAGTTTCTTTAATTAAGGTTTTTACAACTTCCCAGTGCATATC ATAGAAATAGTTTGTATATATATCATGTGTTATCCAACTACTTGAAGGTTTGGCTTATACTTTATGAACCTGTTTGCATC TAAATGGGTTCTATGTCTAATAGGCCTAGATCCAGATATAATCATGCATCATTTCTTTTAGCATATTTCGATATCAACTT ATTATTTCTCAGAATCAATTTTAAAACTCAGAAACTGCTTACACAAGTTTCGTTTCCCCGCAAAATTTGTTTGTGTCATT CTATCTAGGGTTTTTTAAGTATAGAAAGAAAGACAAAAATATTAGAAGAACTTTATTAACTGGTAGATATTGCTCGAGTT TCTGTAAGATGAAGTAGTTAACTAATAGTTGATGTTTCTTTTTGAGAAATTGAACATGGCTTGTTTGTGTGGGAGTTCCA TGCAGATAAGTGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATACCCAACAG GAACAAGAACAAATCGAGCAACCACAGCTGGTTTTTGGAAAGCAACTGGAAGGGACAAAGCCATATACCACAGCAATTCC AAGAGGATTGGCATGAGGAAAACCCTTGTCTTCTACACCGGCCGCGCACCTCATGGCCAGAAGACTGACTGGATCATGCA TGAGTACCGCCTTGATGACGATGATGCTGAGGTTCAGGTGTGATGATCAATAGTTTTAAAACTGTATTTTAATCTCTTAA TCATGAATTTGGATGTTTAGAAAGTCATTTGAAAATCATAATGAAGCGGAAATTATGGTGGACAAAAGCAAGCTCCCTTA AGTTTTGCTTTTGTCCACCATTAAATGATTTTTCAAACATGCACTAAATTTGATTCCATAACTGCAATTGGTCCTACTAT ATAAAAGTTTTTGAAGTCATTGCAAGACCATAATTGTGACTGCATTAACCCGCATTTGTTCACAATTTCAAAATTGTTAA TGTAATCACTACCGCAATTTAAACCTTACATTTATAAAAGTTTAAGTTGTTGATTTGAAGGAAGCTGGTTATAGTTTGAG TGAATCTTGACAAATTAGTTGTTGTATTTTTCAGGAAGATGGGTGGGTGGTTTGCAGGGTGTTCAAAAAGAAAAACACAA CTAGAGGTTTCCAGCAGCAAGAAATTGAAGAAGAAGAGCACTTTAGCCACATGATGAGACCAACAAATAATGGTCCTTGC CACCAGATTCTAGAGTCAAAACACCATCATCACAATATGCAAGGACTATATGATAGCAGCAGCTTTGATGGGACAATTCA CTTACCACAGCTATTCAGTCCAGAATCAGCAGCTGTAGCACCCACTAATTGCATGAACACCATGGACATCCTTGAGTGCT CCCAAAACTTGTTGAGGCTCACAACAACAACAACTGGCTGTGGACTCAATCTCATGCAGCAACAGCAAGGAGATCAGAGG TTCACTGGTGATTGGTCTTTCTTGGACAAGCTACTAGCATCACACCATCCTACTCAGCCTCACCATGCTGTGGGAAGTAC TTCAGCTCAGAAATTTCCATTCCATTATCTTGGCAATGAGGCCCATGATATTATGAAATTTTCCAAGTGAGGTGATGAAA ACCTTATAACATGTGTGTTATACAAAAGAGAGGAGAGAAATTTGGTTTTTAATTAGTATAAGTATTCTGCTATATACACT CCTTGAAATTCCACTCATTAATTTAGTTATTTCTTTTGAATATCAATTGTAGATATGCGTCTTTAATTCTTAAGCTTAGT TTTCAAGCTTTTAAATAAAATACTTTCTTAGAGTGCGTGTTACCCTAAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0129900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGCAGGGCAGTGGACAACTAGCAGTTCCTCCAGGGTTCAGGTTCCACCCTACAGATGAGGAGCTTCTGTACTATTA CCTGAGGAAGAAGGTTTCTTATGAAGCTATTGATCTTGATGTCATAAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGG ACCTCAAAGATAAGTGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATACCCA ACAGGAACAAGAACAAATCGAGCAACCACAGCTGGTTTTTGGAAAGCAACTGGAAGGGACAAAGCCATATACCACAGCAA TTCCAAGAGGATTGGCATGAGGAAAACCCTTGTCTTCTACACCGGCCGCGCACCTCATGGCCAGAAGACTGACTGGATCA TGCATGAGTACCGCCTTGATGACGATGATGCTGAGGTTCAGGTGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0129900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMQGSGQLAVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYP TGTRTNRATTAGFWKATGRDKAIYHSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDDAEVQV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF101941
5 144 140 1.23E-56
IPR036093
PANTHER
PTHR31989
6 142 137 9.5E-101 –
PANTHER
PTHR31989:SF179
6 142 137 9.5E-101
IPR033518
ProSiteProfiles
PS51005
10 148 139 53.625
IPR003441
Pfam
PF02365
11 139 129 8.4E-39
IPR003441
Gene3D
G3DSA:3.30.310.150
19 147 129 1.1E-53
IPR036093

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0048829
Biological process Root cap development The process whose specific outcome is the progression of the root cap over time, from its formation to the mature structure. The root cap protects the root meristem from friction as the root grows through the soil. The cap is made up of a group of parenchyma cells which secrete a glycoprotein mucilage as a lubricant.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0129900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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