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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0129900 |
Transcript ID | LotjaGi3g1v0129900.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain-containing protein, putative; TAIR: AT1G79580.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76; TrEMBL-Plants: tr|A2Q3I9|A2Q3I9_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi3g1v0129900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16073388..16076848) extracted from Lotus japonicus Gifu genome v1.2.
TTCTGTGCCGATTCCTGGTTGTCAGTCCTTGTTTGTGAAGCTAGGATTTGCACTGATCCACACTTATCTCTCCCTCTGTC TCTCTCCCTCTCTCTTTCTTAAAACCCACGTCCGTGCCCTTGAAGCTAAGCAACAGTGTAACCTAAGCCTCCTCCTTCTC TTTGTGTAGTTCTTTGTCTTCTTTCCTTTGTCCTGGAGGGATTCACTTTGCTTGTCACCAAAGGTTTGTGTACTGTTCTA TTTGTGTCATCATAAACTTTACACTTTTCATAGTTGATCATCTTTTTGTTTGTTTTCTCTTGGCTTCTTTCATTTGTGAC TTTATTTACATATTTGAAGAAACCTTTTTGGATCTTCAATTTAGTACTGCTTAATTATGGCTCCAAACTCATTCTTCAAT CATGAATTTAGCTTTCATAGCTCTTGTTTCAGATACACATGCATGTTTGGTTCAAACTCTCAGTTTTAAGAAGGAAGCAA TGAAGAAGGGTTTTCATTCAACTTAATTAAAAATGATCAGTTATAGTTTTTTACAAAGTAGCATACAAAATCATATAGAG ACTGCTCACTTTTCCTTCTTTCTCCCTCATTTTTCCTTCTTATCTCTTTGGGGTTGTACTGAACCCTCTCCATGCAGACT CATGGCATGGCTATTTTGGCTTTTTGTTCAAGCAACATCATGGATATGGGGCATACATGTTCCTGTTTTTCTGCTGTGTG TAAGGATTTGTGTCCTAATATTCATAGATAGGTTGAGGGAAGCATGGACAGAAGTTCTTGTTATTGTTTTTGAAATTTGT TTCTAAGTCAAAGATCTTTTAGCATTTCAACATATCATTGAATAAGAGGTCTAGATATTCTGAAACCGAACAGGTCAGAT AAGTTTGGTAGCTTTTCTTTTTAGGATCTTGCTAGGGTTAGCTCAAAGATTCAGATTTGCACGTGTCTAGAGACTTTTCC TACTATGCATGGAGATAGTAGTTAACCTATGATATCTAAAAGTCTTCCACTTTTTTTCTTTAATTCTGTTCCACACTAAA TTTTGGTTACAACTAGAAATTTAGGAGTGAAGCTAGCTATGGTTTTGAACAAGATTATATAATTATGAATTATCTTAATT CCTCGATCTCCTACTTTTTAGTCATAAATCAGCTTTTTGACAATGAAGAAGGAGACCATGTGATCTCGAGATTATCAATC TCTGCCCACTTTATTTGAATTTCTACTTCATGAACTACTGAGAATGAAACTGTTTCGTATTTGCCTTGCAATAAGTCACA ACCTTGAATTAATTAATATATTTTATTATTAATCAAATGAAAAGTATTCTAATACATATAGATCTTTCTTCTTCTTTTTC TTCAGGTGGACGAATAAAAGAGCTGCAGACAGTACAGAATGATGCAGGGCAGTGGACAACTAGCAGTTCCTCCAGGGTTC AGGTTCCACCCTACAGATGAGGAGCTTCTGTACTATTACCTGAGGAAGAAGGTTTCTTATGAAGCTATTGATCTTGATGT CATAAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGGTACATAAAATATCCCTTCATTAATTGTTCAAA TTATCTACTAAGAGTTTCTTTAATTAAGGTTTTTACAACTTCCCAGTGCATATCATAGAAATAGTTTGTATATATATCAT GTGTTATCCAACTACTTGAAGGTTTGGCTTATACTTTATGAACCTGTTTGCATCTAAATGGGTTCTATGTCTAATAGGCC TAGATCCAGATATAATCATGCATCATTTCTTTTAGCATATTTCGATATCAACTTATTATTTCTCAGAATCAATTTTAAAA CTCAGAAACTGCTTACACAAGTTTCGTTTCCCCGCAAAATTTGTTTGTGTCATTCTATCTAGGGTTTTTTAAGTATAGAA AGAAAGACAAAAATATTAGAAGAACTTTATTAACTGGTAGATATTGCTCGAGTTTCTGTAAGATGAAGTAGTTAACTAAT AGTTGATGTTTCTTTTTGAGAAATTGAACATGGCTTGTTTGTGTGGGAGTTCCATGCAGATAAGTGTAGGATTGGGTCAG GGCCTCAGAATGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATCGAGCAACCACA GCTGGTTTTTGGAAAGCAACTGGAAGGGACAAAGCCATATACCACAGCAATTCCAAGAGGATTGGCATGAGGAAAACCCT TGTCTTCTACACCGGCCGCGCACCTCATGGCCAGAAGACTGACTGGATCATGCATGAGTACCGCCTTGATGACGATGATG CTGAGGTTCAGGTGTGATGATCAATAGTTTTAAAACTGTATTTTAATCTCTTAATCATGAATTTGGATGTTTAGAAAGTC ATTTGAAAATCATAATGAAGCGGAAATTATGGTGGACAAAAGCAAGCTCCCTTAAGTTTTGCTTTTGTCCACCATTAAAT GATTTTTCAAACATGCACTAAATTTGATTCCATAACTGCAATTGGTCCTACTATATAAAAGTTTTTGAAGTCATTGCAAG ACCATAATTGTGACTGCATTAACCCGCATTTGTTCACAATTTCAAAATTGTTAATGTAATCACTACCGCAATTTAAACCT TACATTTATAAAAGTTTAAGTTGTTGATTTGAAGGAAGCTGGTTATAGTTTGAGTGAATCTTGACAAATTAGTTGTTGTA TTTTTCAGGAAGATGGGTGGGTGGTTTGCAGGGTGTTCAAAAAGAAAAACACAACTAGAGGTTTCCAGCAGCAAGAAATT GAAGAAGAAGAGCACTTTAGCCACATGATGAGACCAACAAATAATGGTCCTTGCCACCAGATTCTAGAGTCAAAACACCA TCATCACAATATGCAAGGACTATATGATAGCAGCAGCTTTGATGGGACAATTCACTTACCACAGCTATTCAGTCCAGAAT CAGCAGCTGTAGCACCCACTAATTGCATGAACACCATGGACATCCTTGAGTGCTCCCAAAACTTGTTGAGGCTCACAACA ACAACAACTGGCTGTGGACTCAATCTCATGCAGCAACAGCAAGGAGATCAGAGGTTCACTGGTGATTGGTCTTTCTTGGA CAAGCTACTAGCATCACACCATCCTACTCAGCCTCACCATGCTGTGGGAAGTACTTCAGCTCAGAAATTTCCATTCCATT ATCTTGGCAATGAGGCCCATGATATTATGAAATTTTCCAAGTGAGGTGATGAAAACCTTATAACATGTGTGTTATACAAA AGAGAGGAGAGAAATTTGGTTTTTAATTAGTATAAGTATTCTGCTATATACACTCCTTGAAATTCCACTCATTAATTTAG TTATTTCTTTTGAATATCAATTGTAGATATGCGTCTTTAATTCTTAAGCTTAGTTTTCAAGCTTTTAAATAAAATACTTT CTTAGAGTGCGTGTTACCCTA
CDS sequence (LotjaGi3g1v0129900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGGGCAGTGGACAACTAGCAGTTCCTCCAGGGTTCAGGTTCCACCCTACAGATGAGGAGCTTCTGTACTATTA CCTGAGGAAGAAGGTTTCTTATGAAGCTATTGATCTTGATGTCATAAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGG ACCTCAAAGATAAGTGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTTAGCCACAAGGACAAGAAATACCCA ACAGGAACAAGAACAAATCGAGCAACCACAGCTGGTTTTTGGAAAGCAACTGGAAGGGACAAAGCCATATACCACAGCAA TTCCAAGAGGATTGGCATGAGGAAAACCCTTGTCTTCTACACCGGCCGCGCACCTCATGGCCAGAAGACTGACTGGATCA TGCATGAGTACCGCCTTGATGACGATGATGCTGAGGTTCAGGTGTGA
Protein sequence (LotjaGi3g1v0129900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQGSGQLAVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYP TGTRTNRATTAGFWKATGRDKAIYHSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDDAEVQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 5 | 144 | 140 | 1.23E-56 | ||
PANTHER | 6 | 142 | 137 | 9.5E-101 | – | |
PANTHER | 6 | 142 | 137 | 9.5E-101 | ||
ProSiteProfiles | 10 | 148 | 139 | 53.625 | ||
Pfam | 11 | 139 | 129 | 8.4E-39 | ||
Gene3D | 19 | 147 | 129 | 1.1E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Biological process | Root cap development | The process whose specific outcome is the progression of the root cap over time, from its formation to the mature structure. The root cap protects the root meristem from friction as the root grows through the soil. The cap is made up of a group of parenchyma cells which secrete a glycoprotein mucilage as a lubricant. |
Expression pattern of LotjaGi3g1v0129900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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