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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0132500 |
Transcript ID | LotjaGi3g1v0132500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620); TAIR: AT1G79420.1 C-type mannose receptor (DUF620); Swiss-Prot: sp|Q9LZW9|RTOR2_ARATH Regulatory-associated protein of TOR 2; TrEMBL-Plants: tr|A0A151SWC6|A0A151SWC6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0132500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16593332..16598256) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAATAAAAACCCAAGTAAAAAACTCAAGTAAAATCCCCAAACGTACTTGTGTTTTTTACTTTGGATTTTCATTTTA TTTTTATTTTTTGATCCCTCATTTACTTACGTGGCACCCTCTTTAATTGAATAATTTTCACAAAATATAATACACGCCAA CGCCGTTTACAGAATCATCATAAATTAAACGGAACCTCACGGTAGGGGCTTATCACCATATATTATTTTCACATTAGGGG CTTATTCCACCCAAAAAAATTTGTAGGGGCCTTAACCAAAGCACCCCTATTTTAGAGGGACTTCCAACATATTTAAGCCT ATTATAAATTCCTCTGCCGTTGAACAGATAATCTGTCGCTTTTGTCTCATCCCTCCCCACCTATTTCAATAAGCTAAATC TCACTCCTTCACACTCTTTTAAACTCTCCAAAACCAATCCACATTCTAACAAACACACCCTCTTAATTCTCCTTCTTGTT ATCCCATTCCATTCTCACAACCTTCATCAATTCTCAGAATCCTTAATGGGTTCTAGAGCACGATGGCGTCAGAGTTGGGC TCCACAGCAATTGACACCTTTAATGGAAGGCCCTGACCCTGACATGCAAGAGGAAGGAACCAAGAAGGAGAGTTCATGGG AAACCATAAGGGAATGGTTCAGGGCCCAGAAGATCAACCCTGGTGGTGGATCAGGCAGCATTAATTCACAGTCATTTTAT GGAACCATTCATGCCAAGACCCAAGATTTGAGGTTGTTGCTTGGTGTCTTGGGCTGTCCCCTGGCTCCAATCCCCTCTGC CCCAGATACTACCCTTGGCATTCACAATCACATCAAAGATACCTCATTTGTAAGCTCTCTCCACACATCAAAATCATGTC ATCTTTGCTACTAATTTCATTTTTGTACCACTCAAGTTGGTATAATATGTAGCATTTTTAAGATTCTCCTACAATTAATT TTAATTTTGAAGTTAAAACTAATTTTATTTTGGTGAGAAGTTTAAGGTTTTGATATTAGTTATGACAACCATGAGTTGTA AGCCTGTAACCCTGCTGGTGGTGGTTGAATACCTCGTTCTCTAACGATGAGGTTAGAGACCCATGATAATGAAACACATT TAATAGCAATTATTTACGATTTAATGCGAGCATCCGCCGCAAGGAGATTAGTTACTACTGTCGGCGGTAAATACCCTGAA ACAAGGACATACCTAGGCTAAGTAAAAGAGCGCGGTCGCCCCAAGAGAAAAAATTTCCTTAGTATAACAGTATTCAAATA TTATATCCGCCCAATACAAATTTTTAGATTGTCTTTTTTAATTAGCATTGATTGGTTTTGCTTGAAGTGTCATATTTTTC CTAGTTCCCCTGCCAAAAAAAAATTACATACTTTTGCTTAAGGTGATTCAAAATGTTGATAGTTTAGTAACTTTTTTTCA ATTAATGTAACTTGAAACAGGAAACTTCAACAGCCAAGTACATTATACAACAGTACTTGGCGGCCACAGGGTGCCTGAAG CAGCAAAAGGACACTAAAAACATGTATGCCACTGGGATGGTGAAGATGATTTGCTGTGAAACAGAGATTTCATCTGGGAA GAATGTCAAGTGTTTGGGGACAAGGAGCAGTGAAAATGGTTGCTTTGTGCTTTGGCAGATGCTGCCGGGAATGTGGTCTC TTGAGTTGGTTGTAGGTAGTCACAAGGTGGTTGCTGGCAGCAATGGCAAGACGGTGTGGCGGCACACGCCGTGGCTAGGC ACACACGCTGCCAAAGGCCCACAACGCCCCCTTCGTCGCATTATTCAGGTACATAACAACACAAAGTATGGCAAAGTACA ATTATCTCTTATTAATTAGCTCAAAATTTTCCAAATAATATAGTTATAGGACAAATACAATTAAATACAATTAACTAAGT AGTTAAGTCTTACTATCAAAAAAAAAAAACTAAGTAGTTAAGTCTTTGATTTTCTTTTTGAATAAAATATAACTCCTTGC TCAATCTTCTCACTGCTCAGTGCGCTCTAATGTCACTATTATATCAGTTGTGAAAATACATTGATTAAAGAAAATACAAT TAAATGTATTTGATATCTTTGAGTGTGTACTATTGGATCAAACCTTTTATCTCAAAATCAATTTTAATATAAAAAACTAT TCATAAAAATTCTACTCAAATTATTGGTTTTGGTTGCAAAGTTAATGGTATAAAAATTTTCAAACATGAATTAAGATTTG AGATATATTTAGTTTTAGTTATAAATTTTTATATTTTATACCTTATTAAATTCAAAATATATTATTATCAATTAAATAAA ATTTATATGAAACTTGTTTTTAATTTTTTATATATATATAGATTCCCGTAAATTGCTGCTACTAAAAAGTGTCTGATTGC TTGGATTGTACACTCAGAAAGAGAACTATATATGTTCAAGATTGTCTTGGTATTAAGAGAAAGTTTTCTCTTCCTTAAAA AATAAAAGCTAGCCCATTCTTTCTTTATTTCTTGGATTCCAAATAACATTTTTGAAGACTCGATTTGTATTTTGTGTTTG GCTTCTTGGTTGGTGGTGGGTAGGTTTTAATTAATTATTTGTTGGAATTGAGACTATATTATAGGGGGGACAAAGCCTTA GGGTTCAAAGTAGTTTGTACCACCAAACAAAGATAAAGATTGAGAAACAAATTGAAATAGTAGTACCCAAAGTGAAGGGT ATATTTCGAGCTGACACTGATGGAGAAACTGTCCCATGCTTTACCCTACAACGAGGACTAGTTTTCTTCAGGAATTAGGA TACTTACATGCCACGTGATTGTCGATCTGACGTCAACTATGATTATTGTATAGGTCATGAGTCATCATCTTGGGATTGCT GCTTATTGCAGGTAGATATAAGGCCAAGGCCCAAGGGTACCTGACCTTAGTTATATCCCTTTTGCTTTTACTTTACCTTT TGCACTTTAATGAATAGTGTCCTTCCTCCACTAACATTATTGGCCCTGCTTTCCTGCCCTCGTGTTCCACTTTCCCATTT TTCTCAAAACAATGTTTTGCTTAGGATATCGGGTCCTTCCTAATCCTTGTTTATGAACAGCCAGTTTGATTTCCCTTTAT GGCTTTAAGTTAGATAGAAATAGAACATCAAATGATAAAATAAGTTCAGTACGTTCTTTGTGATTTTTAGACTAATTAAC CTCTACATCTTGCATTGTGACTGGTGTTTCATGTTAAATCAAATTAACCACAATTATTCTTACTTAGTAGTAAGCTCACA TGATCACTTAATTATGAGGTTCAGAGTTCGACCATCACCCATTAGAATGAATTACATATTGTGGTCTACCGTCTACGACT TAGTGCGAACACACACAACGAGAGAATTAGTTATTACAATCGGCGGTGGATACTCTAAGCTGAAAAAAAATTCAAATCAA ATTAATACAAATTTATTTCATTTTTAATGATTGAAATAAATTTGTCACTTGAAATTTCAATAATTAATAGTTAATTTTAA AATCAAAACTAAACATAATAGAACACATAATTGTCATTAAAATATTTTATCATAAAAAATAGGTTATTTTTTAATTACAA TTACAATAAAAAATGTAACTGCTTTTGAATATGTGATATTATGTGAGTAAATGTTAGTAAAAAGAATTTTATACATACCG TACATCAAATTTAAACGTTTTTGTTAATTAGAATATTTTTTATTTTTAGAACATTAAATATGATAAATTATATATTTTGT ATTAATTAAATTGAATTATTTAATTAGGATATTTGTATTTTTTAATTGAATTATTCTTTCTTTATACTTACCGTTCATCA AATTTAAACGTTTATGTTAATTAGAATATTTTTTTTAATTTTTGGAACATCAAATCTGATAATTATATATTATGTATTAA TTAAATTGAAAAAGTTATTTAATTAGGATTTGTATTTTTTTAATTGAGTTATTCAAAACAACTAAATCAAGGCCTTGTGT TTTTTGTTGCCTCACATTTTCAGGGCTTGGACCCGAAGAGCACAGCAAGTCTATTCACCAACGCACAGTGCTTAGGCGAG AACCGAATCGGGACCGTTGATTGCTTCGTGTTAAAAGTATCAGCCGATCGTGAGGCTGTGGTTGAAAGAAGTGAGGGCCC CGCAGAGGTGATAAGGCACATACTATACGGCTACTTTTGCCAAAAAAGTGGACTCCTCATATACCTTGAAGACTCACACC TCACAAGGGTCCCAACACAGGATGATGATACAGTGTATTGGGAGACCACCATAGGCAGCAGCATAGGCGACTATAGAGAC GTTGATGGGGTCTTGATCGCGCATCAAGGGCGATCCATCGCGACGGTGTTTCGGTTTGGTGAGCTCTCAATGCAGCATAG CAGGACTAGGATGGAAGAGATTTGGACCATTGATGATGTTATGTTTAATGTGCCTGGACTCTCTATGGATCACTTCATTC CTCCTGCTGATATCTTTGAGAATGTAAATTCTCCATGACAAACTAAACCTAGAGAATGTTGATTCTCCAAGATAAACTAA CTTTCTTAGTTTTTTTTTCCATGTTAATGTGAATTGTAATTTTACTTTGGAGGGGGGTATAATGAAAGTATTGGTGGGGG GTGTAATTTTGTTATCTTTGTTGTCGTTCATTAATGTATGTTTGTAGTCAGTAGTTTGTCTTCCAAGTCATTAAGCTCAA ATGACAAATTCAAGAGGGAATGGAATAAAGATTATGAACTTGGCCGGTGTTGGTTCAAAAAGTTTGTTTAGGGACTTAGC CAATGTAGATCGGTGAAATAACCAATTAGATTGATTTTTTAATCAAAGCGATTGTTTAAGGAATGAATTATATATGTTTC TCAGTTCAGGTTAGGATACTCAAAAAAGCTCTTAGTTACTCGTTA
CDS sequence (LotjaGi3g1v0132500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTAGAGCACGATGGCGTCAGAGTTGGGCTCCACAGCAATTGACACCTTTAATGGAAGGCCCTGACCCTGACAT GCAAGAGGAAGGAACCAAGAAGGAGAGTTCATGGGAAACCATAAGGGAATGGTTCAGGGCCCAGAAGATCAACCCTGGTG GTGGATCAGGCAGCATTAATTCACAGTCATTTTATGGAACCATTCATGCCAAGACCCAAGATTTGAGGTTGTTGCTTGGT GTCTTGGGCTGTCCCCTGGCTCCAATCCCCTCTGCCCCAGATACTACCCTTGGCATTCACAATCACATCAAAGATACCTC ATTTGAAACTTCAACAGCCAAGTACATTATACAACAGTACTTGGCGGCCACAGGGTGCCTGAAGCAGCAAAAGGACACTA AAAACATGTATGCCACTGGGATGGTGAAGATGATTTGCTGTGAAACAGAGATTTCATCTGGGAAGAATGTCAAGTGTTTG GGGACAAGGAGCAGTGAAAATGGTTGCTTTGTGCTTTGGCAGATGCTGCCGGGAATGTGGTCTCTTGAGTTGGTTGTAGG TAGTCACAAGGTGGTTGCTGGCAGCAATGGCAAGACGGTGTGGCGGCACACGCCGTGGCTAGGCACACACGCTGCCAAAG GCCCACAACGCCCCCTTCGTCGCATTATTCAGGGCTTGGACCCGAAGAGCACAGCAAGTCTATTCACCAACGCACAGTGC TTAGGCGAGAACCGAATCGGGACCGTTGATTGCTTCGTGTTAAAAGTATCAGCCGATCGTGAGGCTGTGGTTGAAAGAAG TGAGGGCCCCGCAGAGGTGATAAGGCACATACTATACGGCTACTTTTGCCAAAAAAGTGGACTCCTCATATACCTTGAAG ACTCACACCTCACAAGGGTCCCAACACAGGATGATGATACAGTGTATTGGGAGACCACCATAGGCAGCAGCATAGGCGAC TATAGAGACGTTGATGGGGTCTTGATCGCGCATCAAGGGCGATCCATCGCGACGGTGTTTCGGTTTGGTGAGCTCTCAAT GCAGCATAGCAGGACTAGGATGGAAGAGATTTGGACCATTGATGATGTTATGTTTAATGTGCCTGGACTCTCTATGGATC ACTTCATTCCTCCTGCTGATATCTTTGAGAATGTAAATTCTCCATGA
Protein sequence (LotjaGi3g1v0132500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSRARWRQSWAPQQLTPLMEGPDPDMQEEGTKKESSWETIREWFRAQKINPGGGSGSINSQSFYGTIHAKTQDLRLLLG VLGCPLAPIPSAPDTTLGIHNHIKDTSFETSTAKYIIQQYLAATGCLKQQKDTKNMYATGMVKMICCETEISSGKNVKCL GTRSSENGCFVLWQMLPGMWSLELVVGSHKVVAGSNGKTVWRHTPWLGTHAAKGPQRPLRRIIQGLDPKSTASLFTNAQC LGENRIGTVDCFVLKVSADREAVVERSEGPAEVIRHILYGYFCQKSGLLIYLEDSHLTRVPTQDDDTVYWETTIGSSIGD YRDVDGVLIAHQGRSIATVFRFGELSMQHSRTRMEEIWTIDDVMFNVPGLSMDHFIPPADIFENVNSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 35 | 35 | - | – | |
PANTHER | 3 | 386 | 384 | 2.3E-219 | – | |
PANTHER | 3 | 386 | 384 | 2.3E-219 | ||
Pfam | 136 | 378 | 243 | 7.8E-113 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0132500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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