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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0135200 |
| Transcript ID | LotjaGi3g1v0135200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyltransferase family protein; TAIR: AT1G16445.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|O34614|YTQB_BACSU Putative rRNA methylase YtqB; TrEMBL-Plants: tr|A0A0B2SWH0|A0A0B2SWH0_GLYSO Putative rRNA methylase ytqB; Found in the gene: LotjaGi3g1v0135200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:17284082..17289271) extracted from Lotus japonicus Gifu genome v1.2.
ACCAATCACATCCTTCATGTATGATACATTGTGGGTATCATAGAAACCAAAATGTTATGTGCCTTTTCGTTTCCTTCAAT TGAGTGGCACCACAGATGTTGTCGCTAAGGTTTTGGTTCTCTTCTTTTGAAACTCACAACTCTCTTTCATGTTCTTCGCG GTGCCTCTTGTTTCTGACACCTTCTCTGAGCAATAGCTCCAGAAACAGAAATCTCGGTTGCTTTTCTGTGAATCCCATTA AGCAAAATGGTGTTTTTTCTGTGTCCAGTAACCGCTTTCAATCTTCTTCTTCTTCTTCTTCCATTCCCAAAGATTCTCCA TTTTCAGGTACCCATTAGCTTCAAAATGTTGCCTATGTAACACTGACACAAACCCATTTGCACAATCTTCTACAAATGCC ATTGCCATTTTTTTCAGGATTGGAGGATGCTTTTGTCAGCTACCTGTTTGGGAAGAAGAGGGCAACGGACGTTGCTCACA TGTATGTGCTCACTGAACTCGTTTCTTTTGAGATGCTTCTGTTTTTCAAAATTTCTGTTTGCTTTTGTATTTTTCATGTT AGTAATTTTTGTCTAGGAATCTGGTTTTTGAACCTCTGTTGTTGAATGTCTTGCTTATTGATTCTCCACAAAATTGCACT CATGTTTAAGGGGCAGATAAAGTCCCAAACTTTTTTACACATTGACTGAAATGCTAATTAAAATTTGTTTTGTCAGCTAT ATTATTAGTCACAAATAATTACATGGATCATATATTTTTTAAAAAGTAACATATGCGGACGATTTAAGAGAATGCAAGGC TAGAAATTTCCATTGTATGATTGGTTAATTATGTGAGAGTTAGGCTTGGAATTGATCTCCTACTGCACTTGTATCAAGGC AAGAAAGCTGAGCAATTAAGTACTCTCTACCTTGGGACGATTTCTGTTGTGTATATATTCGGCTGCAATGCTTATAAAGT AGCTTTGATTGAGTTAGAACTGAACATTTTCCTTGTTTGTTATAGAAGTACAGAACTTTATTTCGCATGCCACTCGTCTG CTGTGTACAACTGACACAGATTGTTACTTCTACTAGTTATTTTTCTCATAGTTGTCTGTAGTCTGTACACTTTGTGATGG TAATTCTTTGGCCTTGATATGAACTGTATTTCTTGTTCCTACAAGGGTATGGAAACAGGTTGTCCAGAAAGGAGACACAG TTATTGATGCCACATGTGGCAATGGTTTTGACACCTTAGCAATGCTCAATTTGGTTGCTGATGATTCTCATAATGGCTAT GTGTATGCATTGGACATTCAGAAAGATGCTTTAAATAATACTTCCTTGTTGCTGGAAGAATCAATTAATGCCGACAAGGT GAGGATTAGAAATGAGTACAGATTTCAATTTTGAATTGGTAAAGAATAGTAGAGTCTCTTTGGTTTGAGGATGTTCTGTT TTTATTTCCTGCTATTCCTAATAATTACAAAATTGTCACCTTGTTTTCACTTCATTTCTTGCTTTCTCAGTTTCCTTTAC AAGTCTTTGAAAACAAGAGATACAGTGAATATATGATAGAAATTCTGTATTATTAGTAAAATGGGGAAATGAAAACAGAA AATATTTTCTCAGACTAAACAAGCCCTTATATATGAATATTTTGAGAATGATATTATGTCCTTGTTATATAGGCAGAGAC AAATATATTCAGATAATGTTTGATCCTGCTATAAACGATTGAGTCTTAATTTTAATTTTTTCACCAGTATATATTATTTA GATAATGTTACTTAGTATTAAAACTGGTCTTGAGCCTTTGATTTTTGGTGCTGTTAATTTGACAACAAATAAGAATTTTC TTGCCACCAACAATAATTTTAAACTATGTGCAGAAACAACTTGTCAAGCTCTTCAATACGTGCCATAGTAAAATGGAGGA AATCGTTCCAAGGAATGCCTTAGTTAGGTACTAAACTTTCCCATCCCTTTACTTATTTCATCCATCTGTTTCTATTTTGT GTTTAGGAGCTAATGGTTATAACTTTATAAATAGCTGATGTAGCTAAATTTATAGCTCTCACTGAAATCTTGACTTGTAC ATTGTTCATTGAATAGATTTCTTGAACATAAAGCCATAATTTCTGCCTTAATTCCACCTAATATATATAATCTTCTTTTC TTTGTAATTGAGATTACTGGCTCACTCAATGCCTTCTCGTTTTATCTTCCATTTATGTATCATTTTTACATAAACGCTTA TTTATGAGTTATGACAGTTACTAATTTACTATTGATGCAATTTCTTGAACATTTAAGTCTGACCTTTAGCTTGATTTTCT GCGTACTCCTAGACTTGTTGCTTTCAACTTAGGTTATCTTCCAGGCAGTGACAAAGAAATAATAACAAGATCGGAAACAA CATTACTCGCACTGGAAGCTGCTGAGAGAATTCTATTACCCAGAGGACTTATTAGCATTGTGGTATACGTTGGGCACCCC GGTGGACGGTAATATTTCTGATTCTCTAGATTGTGTTAAGAATGCATCTTTGTATTGCCAAGTATCCTGATTTTCCATCA ATGTTTTAAATAAATCTGAATCTGAACTTGTATTATTTTGATATAGAATGTACAGATATAATTACTGGAAATGTAGTATC AAGATCCCTGGATTCAGGGATGTAACCGAGGAAACTATCAAAGGCTATTAGAGGATAATAGGAAGGAACAATAAAGGGAG AGAATAGTGATAGTTTTGATTGCAATCAACACTCTTCCTCAAATTGGAGCATGTGTATAAGATGCATCCAACTTGTTACA TATGATGTATGCTATTATACTAAGACCCGGTATAGATTTAATCAACATTTTTCTATTTGATCCTTGGAATTCAGAAAAGA AGTCCTGATGCTTCAGAGAATCTTTATTGTTACAATCAACTTCTGCATGTTAACTATTTTCATGAAAGATTGGGTTTGAA GAGAAATAAAGAGCCTATTGGTTATCACTCACAAGTTCCCTAGGAGATTCCACAACACTTGAATTCCTAAACCAAATATT TTTGCCCCAAAGTTCACATATATTATTAGTCGACGTCGTAGCATGACAATTTACTTCTACGCTGGATCTAGCAACAAAAT TTTGCTTCTTGTCTTCCTCAAGATCAAGATACCTCATATAAGCACAATACCTGAAGTTGATCTCTTGTCACTAGCATCAC CTGTCAAATTTACATTTGCATATTCAATAATATTAGTATGTGCTAGGATCCAAGAGAATCCTCCACATTTACAGGTTTAT TCTAGAAGGGGGCGTGGGCGTAGAGGGGAGGGAGTTAATTGATTGGGTTATCTTTTAGAGTATCTTTCATTTTAGGAGTT GATATTTTATTTTGATAGAGTATCTATTCTTTTAGGAGTTGATATGTTATATTAAGAATCTATCTTTAGAGTTTGATTTA TATAAATAGGAGAAGAGTCATTAGGAGTTTTCATATCTGGGAATTATTGAATTGTAAGGGAATTGCCCTTCTGGAGAAGG TTAAGCTTCTTGGTTCTTTTAATAAATTCCAGATTTGATTCAATAAAATTACTTCCATGCCCCTATTTGTGTGTGTTTGG CTGTTAGGGATATCACTCTCTTACAGTATGACCCTTGTCCAAGCACTTTACTGAGCAAACATTTGATGTGTCTCAAAATT CGAACAACCACATTCCAATGACTATCACACAATGAGTTGAGAAACTAGCTTACAACATCAATAGGAAAAATAATTTTTAG TCTAGTTGGCATGAGATGACTTAACTTACTAACTTATCTTCTAATATCCGCTTGGCCAGAGTTAAAAGAGGCTATCACTT CTGGAGACCTTCTGGATCTCTTAAATTCTCAGTCTCATTCTAGTGTTCTTGTGCAGTAACTATTGTATCATGGCAGGTTG GAGCCATCATGTCTTGGCCTATAGGGTTCCTTTTCATGATGTTCTTGTCAAATAAATTGAAAACATATTTCAACTACCCA GTTGAGCATTGACAGTTAGGAATGTAGCATGTTTTGGATTTGGAACATTGACAGTTTGGATTAAAATAAAATATATGCAG TATGACTGTATGACAAACTGTGAAATTATTAAAATATCAACTGTAAATTATAATTGTGCATTTTTTCTAGTAAGTTCACC TATCGCATAAGAGGATACAAATCCGTTTTGGTAAATGCCATATTTGCAACACAACATACTAGTATCTTAAAATTGACGAA TTTATTCTTATTGCTACATTTTTTAATTAATCCATTTTTGACATGAAGCTACATGCTTGGTTCAATTGTAATATAATCAC ATGCTTTTCATCCAACAATGTTTTGCCTTCTGTACAGGGAAGAATTGGAGGCTGTTGAAACTTTTGCTGCTAGATTGTCT GTTGAGACTTGGATCTGCTGCAAGCTACAGATGTTAAACCGGCCCTCTGCTCCCATACCAATTTTCTTATTCCGAAGATA ATGTAAATACCTATGATTTTTATTGGGTGTCTAAATCACTCCAAATAAATATGGGCTAAAATAAAATCACTCTAGGCTTA TGTTGCCCAATAATATGTTGACACATGTTATGAGCTGAAATTTCCTAATACACGTGTCAAAATATTATTTGGTTACCAAA GACTAGAATGATTTTACTCCATTGTACTTAGGGTGATTTAGGCAAGTCTTTTTTTTTTATAAATATATTAATTAACATTC CTTATCTTTATAAAATAATAAGGAACCTGTTTTGCAATTTATAAAACCTTAAATAGACGTGAAAACCAGCAATACACTCA ACTATTTGGGGGTATACCCTGTGCCACATTGACTGACCATATTAGAAATTACATACTAGAAAGCCATGGTCTTGATTCTC TTGAAGCACAATTCTAACTTTATTTCACTTTATTGGACTTCAAGTTCAAAGGACAAACACATGAGGTTCTTACAAAATGG CAGTGCTTCATCCTTTATTAATTAATGTTGGCCTTGCTTCCTGTTTCTATAACCGCATGATAGTGATACGGTTGTTTGTT ATTTTATTTGTTCAATGAATTATGTGAATATGATATCAATATTGGCATTCTAGCTTCAAAAAAAAGAAATATTGGCATTT TACATTGTAATCATTGATTCTTTTTCCTTTCCTTATTGTTTTGTTGATGAAGTCAATTCAATTCAGCTTA
CDS sequence (LotjaGi3g1v0135200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCGCTAAGGTTTTGGTTCTCTTCTTTTGAAACTCACAACTCTCTTTCATGTTCTTCGCGGTGCCTCTTGTTTCT GACACCTTCTCTGAGCAATAGCTCCAGAAACAGAAATCTCGGTTGCTTTTCTGTGAATCCCATTAAGCAAAATGGTGTTT TTTCTGTGTCCAGTAACCGCTTTCAATCTTCTTCTTCTTCTTCTTCCATTCCCAAAGATTCTCCATTTTCAGGATTGGAG GATGCTTTTGTCAGCTACCTGTTTGGGAAGAAGAGGGCAACGGACGTTGCTCACATGGTATGGAAACAGGTTGTCCAGAA AGGAGACACAGTTATTGATGCCACATGTGGCAATGGTTTTGACACCTTAGCAATGCTCAATTTGGTTGCTGATGATTCTC ATAATGGCTATGTGTATGCATTGGACATTCAGAAAGATGCTTTAAATAATACTTCCTTGTTGCTGGAAGAATCAATTAAT GCCGACAAGAAACAACTTGTCAAGCTCTTCAATACGTGCCATAGTAAAATGGAGGAAATCGTTCCAAGGAATGCCTTAGT TAGACTTGTTGCTTTCAACTTAGGTTATCTTCCAGGCAGTGACAAAGAAATAATAACAAGATCGGAAACAACATTACTCG CACTGGAAGCTGCTGAGAGAATTCTATTACCCAGAGGACTTATTAGCATTGTGGTATACGTTGGGCACCCCGGTGGACGG GAAGAATTGGAGGCTGTTGAAACTTTTGCTGCTAGATTGTCTGTTGAGACTTGGATCTGCTGCAAGCTACAGATGTTAAA CCGGCCCTCTGCTCCCATACCAATTTTCTTATTCCGAAGATAA
Protein sequence (LotjaGi3g1v0135200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSLRFWFSSFETHNSLSCSSRCLLFLTPSLSNSSRNRNLGCFSVNPIKQNGVFSVSSNRFQSSSSSSSIPKDSPFSGLE DAFVSYLFGKKRATDVAHMVWKQVVQKGDTVIDATCGNGFDTLAMLNLVADDSHNGYVYALDIQKDALNNTSLLLEESIN ADKKQLVKLFNTCHSKMEEIVPRNALVRLVAFNLGYLPGSDKEIITRSETTLLALEAAERILLPRGLISIVVYVGHPGGR EELEAVETFAARLSVETWICCKLQMLNRPSAPIPIFLFRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 11 | 280 | 270 | 5.0E-108 | ||
| Phobius | 16 | 27 | 12 | - | – | |
| Phobius | 28 | 32 | 5 | - | – | |
| Phobius | 33 | 280 | 248 | - | – | |
| Gene3D | 90 | 280 | 191 | 2.9E-60 | – | |
| SUPERFAMILY | 104 | 248 | 145 | 6.27E-14 | ||
| Pfam | 138 | 276 | 139 | 1.3E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0135200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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