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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0139000 |
Transcript ID | LotjaGi3g1v0139000.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein,; TAIR: AT2G43000.1 NAC domain containing protein 42; Swiss-Prot: sp|Q9SK55|NAC42_ARATH Transcription factor JUNGBRUNNEN 1; TrEMBL-Plants: tr|A0A0L9UIA7|A0A0L9UIA7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0139000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18278296..18280547) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAAATTGTTCCAAGACTTTTGTGTTCTCCTTTTTTCTTCTGTAGAGAAAAGTAACGCAAACACACATAGAGAGAAGA AGTAACTAAGATGGTTGCAAACGAGGGCATGAGCAAGGATAATGGTCATGTGGAGGATGAAGTTCCACTTCCAGGATTTC GCTTCCATCCCACAGATGAAGAACTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAACAAACCCATCAGTATCGAACTC ATCAAACAGATTGATATCTACAAACACGATCCTTGGGATCTTCCAAGTATGTTTGCACCCTAGTTTTGTAATTTGTTTTC TTTGGGAGTTTCTTGGTTATTCTATTTTTCCTAAGCTTCAAATTTTTTGTATCAAGGATAAATTTAATTTTGAAAAAAAT GAAGAAATATGATTTTCTTCAAATACGAGACAGTTAGAAAATCATAACCATGTTAAAATAGGGCTTGTAGTTGGATAATA GTTTGGAAAACCATGGTTTAATTTCATGGAAAGTAGTTTTTTCTTCCTCCATGAAATTTGATAGCTGGCTGTTTAGCTCT TAGTGCGAACACCCGCAGTAAGGAGATTAGCCACTGCTACCCGCGGTAGATATATACCTGGTCTAAACCAAAAAGGAGTA CTCATGAGTCTTGATGATGATTATAGTTACCTGGATAAACAGTTATATTTTAGCTAGATAAAATTCTGGCATACACAGCC TTGAAATATGTTAATGTTTAAATGTTTAATAATCTACTCTTCTTAATAAGTGCAACTTTAATACTATTTCTCCCCTTGAT AATTTTTCTTCCTCATTACTGGAGCTGAACTTAATTATCTCCATGTTGCAACTGTTTGTGTGTGTAAATGCAGAAGCTAC TGTCAGTACTGGAGGTGAAAAGGAGGGGTACTTCTATTGTAAGAGAGGGAGGAAGTATAGAAATAGCGTCAGGCCCAACA GAGTGACCGGGTCTGGGTTCTGGAAAGCAACTGGTATAGACAAACCAGTGTACTCCCATGGAGGAGAAGGACATGAGTGT GTTGGGCTCAAGAAAACACTGGTGTACTACCGTGGCAGCGCCGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTT TCGCCTCCCTAACACTGCAGACACCATCAACACAAAACTTCCCAACGCCAAGAATTATGTTGATCATACTGCCCAAGAAG CTGTAAGAAATTACTTAGATAAGAATACTTATTTCAATATTTTATTTTTTCAGTTATGATAGGTATCTAAATATACAGCT AATTGAGGCAAAAAAAAGTTCATGTGAACTCCTTCAGTTGATTACACTCACCATTTACTAAGCAAGAAATAGGTCATGTA GATGTCCTCATTTCTAAAGAAAAAAATTGAGGACTAAAATCTATGAAAAATGGCAGTTCGATGGTGGACCATGTTAACTA ATATATATATTTTTTTTATATATAACACATGTTAACTAATATTCAGTACATATTATTTAAAACTATTTTACGGATAATTC ATTTAACTTGTGAAATGTGTTTTTCTTGGTCCATAGTAAAAATTGATAGACCAGTTTAAATGCGACACTATATTACAAGG TATGCAACATATTTAACCCTATTTATTTTCTCAACCTCCAGGAAATTTGGACATTGTGTCGAATCTTCAAAAGAAATGTA TCACAAAGGAAGCACACGCCAGAGTTGAGACTATTAGGTGCTAAGCGTCAGTGCGTTCATGACAAGAGCAGCAGATCAAT GATGAGCAGTGCTGAGTTTAACACTAATCAAGAGACATATATCAACTTTGGTGCAAGCTTAGGCTATTATCAAGATGGGC AAAAACCCACCATCAGTAACTACTCAAGCAGTGATCAAAGGAATAACTTTCATGGAGGCCAGTTAAGATCTCCAACAGTG GTACAGCAAGCTCAAGTAAATGCAGCATCTTCGAACTTCTGGATGAACTTGGCCATGAGTACTGATCATTTCTTCACATC TGATAATTGGGATGAGCTTGGCTCAGTTGTGAAATTTGCTGCGTAGCCTAACCACGCAGTTTTAATTTAGTAGTTAGGAA TTACAATGGGACATATATATATATAGTTGTATTCATATATGAGAGTATTTGCATTAGAGATTATTAATTTTGTTGATCAT CAGTGGGCACATTTGGCTAAGCACTGCAACTAAACACAAATGAAAATAAATATTTATCACATAATTTATGTATAAACTTT TGAGAAAGTTAT
CDS sequence (LotjaGi3g1v0139000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCAAACGAGGGCATGAGCAAGGATAATGGTCATGTGGAGGATGAAGTTCCACTTCCAGGATTTCGCTTCCATCC CACAGATGAAGAACTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAACAAACCCATCAGTATCGAACTCATCAAACAGA TTGATATCTACAAACACGATCCTTGGGATCTTCCAAAAGCTACTGTCAGTACTGGAGGTGAAAAGGAGGGGTACTTCTAT TGTAAGAGAGGGAGGAAGTATAGAAATAGCGTCAGGCCCAACAGAGTGACCGGGTCTGGGTTCTGGAAAGCAACTGGTAT AGACAAACCAGTGTACTCCCATGGAGGAGAAGGACATGAGTGTGTTGGGCTCAAGAAAACACTGGTGTACTACCGTGGCA GCGCCGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCTAACACTGCAGACACCATCAACACAAAA CTTCCCAACGCCAAGAATTATGTTGATCATACTGCCCAAGAAGCTGTAAGAAATTACTTAGATAAGAATACTTATTTCAA TATTTTATTTTTTCAGTTATGA
Protein sequence (LotjaGi3g1v0139000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVANEGMSKDNGHVEDEVPLPGFRFHPTDEELVSFYLRRKLDNKPISIELIKQIDIYKHDPWDLPKATVSTGGEKEGYFY CKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSHGGEGHECVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPNTADTINTK LPNAKNYVDHTAQEAVRNYLDKNTYFNILFFQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 9 | 160 | 152 | 2.7E-94 | – | |
PANTHER | 9 | 160 | 152 | 2.7E-94 | – | |
SUPERFAMILY | 18 | 155 | 138 | 2.35E-52 | ||
ProSiteProfiles | 19 | 174 | 156 | 47.288 | ||
Pfam | 21 | 150 | 130 | 6.7E-35 | ||
Gene3D | 28 | 183 | 156 | 6.4E-51 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0139000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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