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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0139100 |
| Transcript ID | LotjaGi3g1v0139100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor 4; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|G9JJS4|G9JJS4_ZIZJJ Elongation factor; Found in the gene: LotjaGi3g1v0139100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18294229..18297315) extracted from Lotus japonicus Gifu genome v1.2.
CAGGTGAAGTTTACAGCTGAGGAGCTTCGTCGTATTATGGACCTGAAGCATAACATTCGTAATATGTCTGTTATTGCTCA TGTTGACCACGGTATGGATTCAAGAGGGTTTTGTTTTGTTTTTCTGGTTATTGCTCTATGATTTACTTTCCTGATTGAGT GTTGTTGTTCTCTTATTCTATGTTTATGAAGATATAATTGTGTTTTTGGTGTTTGTTTGACAAGAAATTAATGGTTGTAT CTCTTGAAATGTTCCTTTATATTTGGTATCAAATTAATGTCTTCGATATTTATTTTGGAGTTCTCGCTTAAGGGTTGTTG GGTAGGCGTTTAGACATGCTTGTTTCCTTGAGGGGTTTGTTTTGGGGTTGCTGTTGTGGTTGGTATTTTGCGAGCTATTT TGTTGGCTTGGTCATTGTACCCATGTTGGGAGGGATAGTTTCTCAACTTTCTATATATTTCAATATATTTTGCTTTCAGA AAAATATTCATTTCAATTATCTTTTGTATACATATGTCATTAACGATAGTCTGTGATGCAATTGTTTAGCTGTTTATCAG GGGTGCATTTTATTTTGTCATATGATAATTGCCTTAATTTGCTGGTTTGAATTTTAACAATTTATTCTTTTGGTTCCTTA TTGCAGGAAAATCCACTCTCACTGATTCTCTGGTGGCTGCTGCTGGAATTATTGCACAAGAAGTAGCAGGTGATGTCCGT ATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATTACAATTAAGTCTACTGGTATCTCACTGTACTATGAAATGAC TGATGTGGCTCTCAAGAGTTTCAAGGGAGAGAGAATGGGCAATGAGTATCTCATTAATCTCATCGACTCCCCTGGGCACG TCGACTTCTCATCTGAGGTTACTGCTGCACTTCGTATTACTGATGGAGCCCTTGTTGTGGTGGATTGTGTTGAAGGTGTC TGTGTCCAAACTGAAACTGTGCTACGACAGGCCTTGGGAGAAAGGATTAAGCCTGTTCTGACTGTCAATAAGATGGACAG ATGCTTCCTTGAATTGCAGGTGGATGGAGAGGAGGCCTATCAGACTTTTAGCCGTGTTATTGAGAATGCTAATGTGATCA TGGCTACATATGAAGACCCACTGCTTGGTGATTGTATGGTCTACCCAGAGAAAGGAACAGTTGCTTTCTCTGCTGGTCTT CATGGCTGGGCTTTTACTTTGACAAACTTTGCAAAAATGTATGCCTCAAAATTTGGTGTTGACGAGTCAAAGATGATGGA AAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCCACCAAGAAATGGACCACCAAGAATACTGGTTCAGCTACCTGCAAGC GAGGGTTCGTTCAGTTCTGTTATGAACCTATCAAGCAGATTATTAACACTTGTATGAATGATCAGAAGGATAAGCTGTGG CCTATGCTGCAAAAGCTAGGAGTCGTCATGAAATCTGATGAGAAGGACCTGATGGGTAAACCATTGATGAAACGTGTCAT GCAGACATGGCTCCCAGCAGCTAGTGCTCTCTTGGAAATGATGATCTTTCATCTTCCTTCTCCATCAACAGCCCAGAGAT ACCGTGTTGAGAATTTGTATGAGGGTCCCCTTGATGATCAATATGCTACTGCTATCAGAAACTGTGATCCTGAGGGACCT CTGATGCTTTATGTCTCAAAGATGATTCCTGCCTCTGACAAGGGTAGGTTTTTTGCCTTTGGCCGTGTCTTCTCTGGTAA GGTTTCAACTGGTTTGAAAGTCAGGATTATGGGACCAAATTATGTTCCTGGAGAGAAAAAAGACCTGTATACTAAAAGTG TTCAAAGAACTGTCATTTGGATGGGAAAGAAACAGGAGACTGTTGAGGATGTTCCTTGTGGTAACACAGTTGCTTTGGTT GGTTTGGATCAATTTATCACCAAGAATGCTACATTGACAAATGAGAAGGAAACTGATGCTCACCCAATTCGTGCTATGAA GTTTTCTGTCTCCCCTGTTGTCCGTGTTGCTGTTCAGTGTAAGGTTGCATCTGATCTTCCTAAGCTTGTTGAAGGTCTTA AACGGTTGGCTAAATCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGAACACATTGTTGCTGGTGCAGGAGAG CTTCATCTTGAGATCTGTTTGAAGGACTTGCAAGATGATTTCATGGGTGGAGCTGAGATTGTTAAATCTGACCCTGTTGT GTCTTTCCGAGAGACAGTTCTAGAGAGATCATGCCGCACTGTGATGAGTAAGTCACCCAACAAGCACAACCGTCTGTACA TGGAAGCAAGACCACTGGAGGACGGGCTTGCAGAAGCTATTGATGATGGCAAGATTGGACCAAGGGATGACCCCAAAGTT CGTTCCAAAATCTTGTCCGAAGAATATGGTTGGGACAAGGATCTTGCCAAGAAAATCTGGTGTTTCGGACCTGAGACCCT TGGACCAAACATGGTGGTTGATATGTGTAAGGGAGTCCAGTATTTGAACGAAATCAAGGATTCTGTCGTTGCCGGATTCC AGTGGGCATCAAAAGAAGGTGCTTTGGCTGAAGAAAACATGAGGGCCATTTGCTTTGAAGTGTGTGATGTTGTCCTGCAT GCTGATGCCATCCACAGAGGTGGTGGTCAGATCATTCCTACAGCTAGGAGAGTGTTCTATGCTTCCCAGTTGACTGCCAA ACCCAGGCTCCTTGAGCCTGTTTACCTGGTGGAAATCCAGGCTCCTGAGCAAGCCCTTGGTGGTATCTACAGTGTTCTGA ATCAGAAACGTGGACACGTCTTTGAGGAAATGCAGAGGCAAGGTACCCCACTTTACAACATCAAAGCATACCTCCCTGTC GTCGAATCCTTCGGATTCTCTGGCACTTTGAGGGCTGCAACATCAGGGCAGGCTTTCCCACAGTGTGTCTTTGATCATTG GGATATGATGTCCTCAGATCCATTGGAGTCTGGCTCACAAGCTGCAACGCTTGTTACTGACATTCGTAAGAGGAAGGGTT TGAAGGAGCAGATGACTCCACTCTCTGAGTTTGAAGACAAGCTTTAA
CDS sequence (LotjaGi3g1v0139100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCTGAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGACCACGGAAAATCCACTCTCACTGATTCTCT GGTGGCTGCTGCTGGAATTATTGCACAAGAAGTAGCAGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGCTGAGC GTGGTATTACAATTAAGTCTACTGGTATCTCACTGTACTATGAAATGACTGATGTGGCTCTCAAGAATCCATTGGAGTCT GGCTCACAAGCTGCAACGCTTGTTACTGACATTCGTAAGAGGAAGGGTTTGAAGGAGCAGATGACTCCACTCTCTGAGTT TGAAGACAAGCTTTAA
Protein sequence (LotjaGi3g1v0139100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDVALKNPLES GSQAATLVTDIRKRKGLKEQMTPLSEFEDKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 99 | 99 | 6.4E-25 | – | |
| PANTHER | 1 | 75 | 75 | 2.9E-55 | – | |
| PANTHER | 1 | 75 | 75 | 2.9E-55 | – | |
| SUPERFAMILY | 2 | 71 | 70 | 7.25E-24 | ||
| Pfam | 5 | 69 | 65 | 1.6E-22 | ||
| PRINTS | 9 | 22 | 14 | 4.4E-6 | ||
| ProSitePatterns | 46 | 61 | 16 | - | ||
| PRINTS | 53 | 61 | 9 | 4.4E-6 | ||
| PANTHER | 72 | 111 | 40 | 2.9E-55 | – | |
| PANTHER | 72 | 111 | 40 | 2.9E-55 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0139100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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