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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0145900 |
| Transcript ID | LotjaGi3g1v0145900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 9-cis-epoxycarotenoid dioxygenase; TAIR: AT3G14440.1 nine-cis-epoxycarotenoid dioxygenase 3; Swiss-Prot: sp|Q9M6E8|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic; TrEMBL-Plants: tr|C8CEB0|C8CEB0_9FABA 9-cis-epoxycarotenoid dioxygenase; Found in the gene: LotjaGi3g1v0145900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19425074..19428164) extracted from Lotus japonicus Gifu genome v1.2.
TACCTTTCAACTCTACCCACCACTTTCTCTCTCTTTCTTCCTTTGTTTTCTTGTCATCAATTGTCATGTGTTATTGCTCT CAATTTAAGGAACTTTCCCCATATTATAATCAATATTCCCCTATTATTATTTTCCTCATTTAATATTCCTAAACACATTT TTATATTCTAGAGAGAGAAAACGCAAGAGTGTAGTCGTGGCATTGTATCACGCAGCTCTACCCCACCTTGTCTTGATCAC TTATTGGCAATCCTACCTTTTATGAGAGTCCCCTAACACGTGGTCTTCTCCTATATGTCTCTGTTAAACCTCCATTCCCA CCTCCTTCCCCTCCACTATATATATCCCTCATCTCACTCCTCACTCTCCTCAACTCTCTCCCTGCCCCTCTCACTCTCTT CAAACTTTTCAAACAACCTCAATTCTTACAAATTTCCCAAACACACACCTTCTTAGCTCTCTTAACTACTCATACTAAAT AAATTAGTACACACTCCCTTCAAAAATAGAGAACCATGGCTACCTCAGGGATATCAAACACGTGGATTAACACCAAAACC AAACTCAATTCTAATTCCCCCTTCAAGGATTTGGGCTCCTCAAGTTTCACACCAAAGATCTCAATCACCTTCAAGAAGGG GTCCACCTCCACAATCAGCAGCAATAAAACCGTTTCATGCTCGCTTCAAACACTTCACTTCCCCAAAAAGTACCAACCCG CAAAAACCGCCACCACCACCACCAAAACCGCCACTCCCGCAAAGGAAAACACCGCCAAAACATTGCCCCAAAAGTGGAAC CTTCTACAGAAAGCGGCGGCCACCGCTCTAGACCACGTCGAATCCGCCTTGGTTCGCCGCGAGCGCCAGACCCCGCTTCC TAAAACCGCCGACCCGCGAGTCCAAATCGCCGGTAACTTCGCTCCGGTCCCGGAGCATCCCGTCACCCACTCCCTTCCTG TCACCGGCAAAATCCCCAAATGCATTGACGGTGTGTACCTCCGCAACGGCGCAAACCCCCTCCACGACCCCGTCGCCGGG CACCACTTCTTTGACGGTGATGGTATGGTCCACGCCATGAAATTCAACAACGGCTCCGCTAGCTACGCCTGCCGGTTCAC CCAGACAGAGCGGTTGGTCCAGGAGAAATCCCTCGGCCGCCCCATTTTCCCCAAAGCAATCGGTGAACTCCACGGCCACT CCGGCATCGCGCGGCTCGCGTTGTTCTACGCCCGCGCCGCCTTAGGCATCGTCGACAGCAGCCACGGCATGGGCGTAGCC AACGCCGGACTAGTCTACTTCAACAACCACCTCCTCGCCATGTCAGAAGACGATTTACCTTACCACGTCCGCGTCTCGCC TAACGGCGACTTAACCACGGTCGGCCGTTACAACTTCAATGATCAGCTCAAAACTACAATGATCGCCCATCCCAAAGTTG ATCCAGTTGACGGCACCCTCCACGCGTTGAGCTACGACGTGGTTCAGAAGCCTTACCTCAGGTACTTCCGTTTCTCCGAA AACGGCGTCAAATCCCCTGACGTGGAGATTCCCCTCAAAGATCCCACCATGATCCACGATTTCGCGATCACCGAGAATTT TGTGGTGGTTCCTGACCAGCAGGTGGTGTTCAAATTAGGCGAAATGATTCGCGGTGGGTCCCCCGTTGTCTATGACAAGG AGAAGGTCTCGAGATTCGGAATCCTTGACAAGAATGCCAAGGATTCCAAAGCAATGAGATGGATAGAAGCACCCGAGTGC TTCTGTTTCCATCTCTGGAACGCGTGGGAGGAGCCCGAGAATGATGAGGTTGTTGTAATTGGCTCCTGCATGACCCCTGC TGACTCCATTTTCAACGAGTGTGACGAGAATTTGAAGAGCGTGTTGTCAGAAATTAGGCTCAATTTGAAAACAGGCAAGT CAACTCGTAGACCCATTATTGAAGAATCTGAGCAAGTTAACTTGGAAGCTGGCATGGTTAACAAGAACATGCTAGGGAGG AAGACGCAATTCGCTTACCTCGCTCTCGCGGAGCCGTGGCCTAAAGTGTCCGGGTTTGCGAAAGTGGACCTGTACACAGG CGAGGTGAAGAAGTACATCTATGGGGATCAGAGGTTCGGCGGTGAACCTCTATTCCTCCCTAGAGACATCAATTCTGAGA GGGAAGATGATGGGTATATTTTGACATTTGTACATGATGAGAAGGAATGGAAATCTGAGCTGCAGATTGTGAACGCAATG AATTTGAAGTTGGAGGCTACCATTCAGCTTCCATCCAGGGTTCCCTATGGTTTCCATGGAACCTTCATTGAATCAGAGGA CTTGAAGAAGCAAGCTTGATGATTAGAGCTTCTCTTCAACTGAGTTCCTTTTTTACTTGCTGGTTTGTGAAAGGAGAGAG ATTTATCCGAGGGATGCTGCAGATATGTCCCCGAAATCTTCTCCTCTGTTTTTACTGCAGAAGATTTTTATTTCTGCATT CTTTCTTCTTCTTTTTTTATCAATTTTTGGTTTTTTTTGGGACCAGCTTGAAGCTTTTGGCTGTAGTTAGTATTGAAGCT CAGCTGGTCTCTGCTTGTTACTTTCACTTGATGTGCATGAAAGTATTAATCACAGTATAGGATGTGATATGATGAATGAT GATATGTGTTTGTGGTCAGTACTACTGTAAACTTTTGTTCAGCACAGTTTTCTGTTGAAAATATCTGAAATAATGCATAT TTCACTACTGTTACAATTATCAGTCCCTTGTGCAAATAGTTTTGTTCAGATCCTTGTCTTTCGCATGATGATTTTGGAAG ATGCTGTGCGGAAAATAAAATAAAGGGTAACTGCCGAATTCCTGACTAGGTGCCTTTTGCTTGATGTGGCCTGGCCTGTA TTAAAGTAAATCTACCTTAAAACTTAGAAAATATATATTCATCAAAGTTTGGTCTATAGCTAAATATAATACTACTACTG AAGATGCCTATTTAATGTGTGTTTGATTCTAGAAAGCTCCCTGATAAGTCACAGAATTAGTTTTTGAATTCTGTGTTCAT CAAAGTATGCTACTAATTTTTGCAGCTACTTAATGCTCTGTTAGCTTCCTT
CDS sequence (LotjaGi3g1v0145900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCTCAGGGATATCAAACACGTGGATTAACACCAAAACCAAACTCAATTCTAATTCCCCCTTCAAGGATTTGGG CTCCTCAAGTTTCACACCAAAGATCTCAATCACCTTCAAGAAGGGGTCCACCTCCACAATCAGCAGCAATAAAACCGTTT CATGCTCGCTTCAAACACTTCACTTCCCCAAAAAGTACCAACCCGCAAAAACCGCCACCACCACCACCAAAACCGCCACT CCCGCAAAGGAAAACACCGCCAAAACATTGCCCCAAAAGTGGAACCTTCTACAGAAAGCGGCGGCCACCGCTCTAGACCA CGTCGAATCCGCCTTGGTTCGCCGCGAGCGCCAGACCCCGCTTCCTAAAACCGCCGACCCGCGAGTCCAAATCGCCGGTA ACTTCGCTCCGGTCCCGGAGCATCCCGTCACCCACTCCCTTCCTGTCACCGGCAAAATCCCCAAATGCATTGACGGTGTG TACCTCCGCAACGGCGCAAACCCCCTCCACGACCCCGTCGCCGGGCACCACTTCTTTGACGGTGATGGTATGGTCCACGC CATGAAATTCAACAACGGCTCCGCTAGCTACGCCTGCCGGTTCACCCAGACAGAGCGGTTGGTCCAGGAGAAATCCCTCG GCCGCCCCATTTTCCCCAAAGCAATCGGTGAACTCCACGGCCACTCCGGCATCGCGCGGCTCGCGTTGTTCTACGCCCGC GCCGCCTTAGGCATCGTCGACAGCAGCCACGGCATGGGCGTAGCCAACGCCGGACTAGTCTACTTCAACAACCACCTCCT CGCCATGTCAGAAGACGATTTACCTTACCACGTCCGCGTCTCGCCTAACGGCGACTTAACCACGGTCGGCCGTTACAACT TCAATGATCAGCTCAAAACTACAATGATCGCCCATCCCAAAGTTGATCCAGTTGACGGCACCCTCCACGCGTTGAGCTAC GACGTGGTTCAGAAGCCTTACCTCAGGTACTTCCGTTTCTCCGAAAACGGCGTCAAATCCCCTGACGTGGAGATTCCCCT CAAAGATCCCACCATGATCCACGATTTCGCGATCACCGAGAATTTTGTGGTGGTTCCTGACCAGCAGGTGGTGTTCAAAT TAGGCGAAATGATTCGCGGTGGGTCCCCCGTTGTCTATGACAAGGAGAAGGTCTCGAGATTCGGAATCCTTGACAAGAAT GCCAAGGATTCCAAAGCAATGAGATGGATAGAAGCACCCGAGTGCTTCTGTTTCCATCTCTGGAACGCGTGGGAGGAGCC CGAGAATGATGAGGTTGTTGTAATTGGCTCCTGCATGACCCCTGCTGACTCCATTTTCAACGAGTGTGACGAGAATTTGA AGAGCGTGTTGTCAGAAATTAGGCTCAATTTGAAAACAGGCAAGTCAACTCGTAGACCCATTATTGAAGAATCTGAGCAA GTTAACTTGGAAGCTGGCATGGTTAACAAGAACATGCTAGGGAGGAAGACGCAATTCGCTTACCTCGCTCTCGCGGAGCC GTGGCCTAAAGTGTCCGGGTTTGCGAAAGTGGACCTGTACACAGGCGAGGTGAAGAAGTACATCTATGGGGATCAGAGGT TCGGCGGTGAACCTCTATTCCTCCCTAGAGACATCAATTCTGAGAGGGAAGATGATGGGTATATTTTGACATTTGTACAT GATGAGAAGGAATGGAAATCTGAGCTGCAGATTGTGAACGCAATGAATTTGAAGTTGGAGGCTACCATTCAGCTTCCATC CAGGGTTCCCTATGGTTTCCATGGAACCTTCATTGAATCAGAGGACTTGAAGAAGCAAGCTTGA
Protein sequence (LotjaGi3g1v0145900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSGISNTWINTKTKLNSNSPFKDLGSSSFTPKISITFKKGSTSTISSNKTVSCSLQTLHFPKKYQPAKTATTTTKTAT PAKENTAKTLPQKWNLLQKAAATALDHVESALVRRERQTPLPKTADPRVQIAGNFAPVPEHPVTHSLPVTGKIPKCIDGV YLRNGANPLHDPVAGHHFFDGDGMVHAMKFNNGSASYACRFTQTERLVQEKSLGRPIFPKAIGELHGHSGIARLALFYAR AALGIVDSSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRVSPNGDLTTVGRYNFNDQLKTTMIAHPKVDPVDGTLHALSY DVVQKPYLRYFRFSENGVKSPDVEIPLKDPTMIHDFAITENFVVVPDQQVVFKLGEMIRGGSPVVYDKEKVSRFGILDKN AKDSKAMRWIEAPECFCFHLWNAWEEPENDEVVVIGSCMTPADSIFNECDENLKSVLSEIRLNLKTGKSTRRPIIEESEQ VNLEAGMVNKNMLGRKTQFAYLALAEPWPKVSGFAKVDLYTGEVKKYIYGDQRFGGEPLFLPRDINSEREDDGYILTFVH DEKEWKSELQIVNAMNLKLEATIQLPSRVPYGFHGTFIESEDLKKQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 607 | 569 | 0.0 | – | |
| PANTHER | 39 | 607 | 569 | 0.0 | ||
| Pfam | 137 | 598 | 462 | 1.6E-109 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0145900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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