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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0146200 |
| Transcript ID | LotjaGi3g1v0146200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein; TAIR: AT3G14450.1 CTC-interacting domain 9; Swiss-Prot: sp|Q9LRR6|CID9_ARATH Polyadenylate-binding protein-interacting protein 9; TrEMBL-Plants: tr|C6TDF4|C6TDF4_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0146200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19506953..19515378) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGCCTTTATTATTCCAAACACCAAACTCTACTCTCTCTCTCTCTCCCCTCTGTTCCATTTGATGATTCATTTCAAAA CCCTAATTCTCTGTGTTACCACTTTCCATTGCTGGCTCAATCTCTCTTTTTTAATCAAATTATGAGCATTGATTAACTTG TGGTATTTTGTTCATATCCATTTTATTTTTTTTCTGAAAAATTGTTCTCATCAAAATATTTGATCAAATTTCTATGTCTG TAATATTTTTATTTTTTTATTTTTTTTGAAACTTTTGGGATGCCACAGAACTAGAGAATCTCTTGAATTTCCTGAAATTT TTTTGTTAAAAATCTTCACTTTGGAGCATAAGTGTTACAAATTGTGTTGAAGAATTTTGTGGGGTGGCTTTGATTTTCCA TGGCTGCGGTTGCTGACATTTCCGCCGCTGATGCCAACAAAATGGACTCAAAACCAAAGCCAGAATCAGAATTCACTGTG CAGAAGCTGGTTGACATGTTCACAAAGCTGAATCCTTTGGCCAAGGAGTTTTTTCCTTCATCATATTCTCTCCACAATCT TGATGATCATCATCGCCATCAGGGCTATAATAATCAGCTCACACCTACCCATTTTCTGGTCAACACTACTAAGCCATCAG CTAATGACAATTACCTTAACAATCGAAGGGTATCATTGTTTTGTCTTTGATCTCTCAATTATACAATTACAGATAGCTTT CTTGTAATTCTTATTAATATTTTTTTTTGAGTGCTACTTTAGTGAATAGGTTTTGCTTAACTCTTCCATTCTCAGCTGGA TTGTGCTTGTGCTGGAAAATCTGGATTTTTTTTAATTTTTTTTTGGGTTGCACATTGTCTTATATGAAATTTTATTACTT GATTGAAAATTGTCCTGTAACATTTTTTATTCTTAGTGGTAAAGATAATATTTTTAATCAATCCAGTGAAAGAAAGCACA AGGGAAAGCAAGCAGCAAGAACTGTTAACCCAGAGAGAGAGAAAAATAGTACAAATGGAAAAACCCAGCGGCACAACCAC CACCTTAAAGAAATTGCACCATAGCAAAATGTAAATCTAGTCTTAAAACAAAATCCAAGTATTCAGTGAAGTGGCAAGTT TTTTGTCCATAAATTGTAAATTGGCATGAGTTGAATTGAGTCTAGTATTTGATCATACTTAGATGCATCCTATATGGGTT TTATTTTTCGTATTTTATGGGGATTACGCTCATGGTTTTAAATTAGGTTTTTGACCTTCAATTGTAGTATGGCAGGTCTT CACAACCTCATCATGACTGCAATTGTGGCCTCACTTTGCCAGTAATTTTCTACAATTTAGCAATCATAAAGCAACTGTAA CAGCAATTCAATTAGTTAGCATGCTGTTAGTGGTCATGTGAGTTAGTTGAGCCTCGGTTCGCCTAGAGGCTCAGTTGCAT ATGAGAAGCTTGTATCATACTCATTTCTCTGTTGAATAGAAATGATCTCTTTGATCATTCTGCATATTCTTCTCTGGGTT GACACCATTACATCTTGTGGTTATTTTGTTTTCATGGGGAAAGATATTTTTCTCCTTTCCATCAACATTACACTTTAGGA GATATTTCAAATTTTTTTGTCGGTAACTGCAACTTTTGGCTTTACCATATGTTACTCCTGTCATTTGTCTCATTGCCTGA TTATCTTCAAATTGATTATATGGCATTTTTCATGCTACGGTGAGCCTAGAACTATATTCGTTGAAGATTGCAGTTTTTGT TGAAATTATAATGATGTCATTGAGGCAGCACCATATGTCTAAGTTAATCTTGCTGTCATATTTCTTTTTGTATTTGCTGA AAATTTACACTTCTCTCATCTTGCAGAGAAGAAACAGTTTTAACCAAGGGAAGAGAAGGTTGAATGGAAGATCACTAAAG GCTCAGAGAGAAGATAGCATTAGAAGAACAGTGTATGTTTCTGATATTGATCAGCATGTAAGTAAAGTGGGAATGGCAGG GATAATTTTTTTATCTTTATTCAGTTTGTTTTATGTTCCATTCTGATTGTACAAAACCAAATTATTTGAACAGTCTTTTG TCTTGTTGTAGGTTACCGAGGAACGGCTTGCCGCCTTATTCACTGGCTGCGGACAAGTAAGTTATGAGTTTTTTTTTTGA TAGCTTGATTAGTCATTTTTATTTCTTTCAGTTTACAATTAGGTAAAAATGATTTTATTGCTTAATAGTTTTTAACTCAG GTATCAAATTGAAGTATTGATTTTTCGTAGAAAGTTTTTGTTTTATTGTTTTCACTATATTCTTTTATGTGGTTCTATGT CTATTATGACCTAGCTTTATTAGCTTATATTTTTCCACTTGTTGCTGGAATTTACCCCTCCAAGTGTACCATATGCCAAA CATTGCTGACTTGCCCCTATTCTGATACATACTTCGCTTCGTGGAATTTTCGCGCTTTAAATATCCACACAGTTGGCTCA TTTTTCCTCGTAATGTAGGATGCTGATCAGGCCCATTACATGATATGAACTGTACACTCCATTTTATGCATGATATGCAT GCTGATCAGGCCCACTATTTCTGGTTTATATTTATGCTTATCATTTGTTTTGTTAATCTGTGTTAGTTATGTGGTTTTGG TCATTATTACTTCTACAATTTTATTAATTTAAACCCATTGAGTTCTTAATCTGATATAAAGATTGTAAGGCTGATTTGGA GTTCATGCCTATGGAACATGCATCTCAGAGTTCTTCCGAAAATATTTCATTGTGCAAAATAATTTCCTTGATATTTAAAT AATTGGTGAAATCAGCTGTTGTAAATGGGACAGGTATGCATTCATTGACAATATATATGTGATATTAGCTAGAAGTCTCA AATCCTTACCAAAACAAATAAATGCATATCTGTTCATCTGAAGGAATCTTTGTTAATTCATTGCTTTCATCGACCTTATC TTAGCATCATCCCTTTTGAGTTTGTCCTCATATAATGTTCTTTATTTAGCATGTAAAATTCCAGCACATGGATGATGGTT TGGGTTAAAAGGTAGAGGAAGATTGAAGAAAATATTTGTCTGTGGTAGGCCCCAGTTTCTTGTTCTATATTAGTCAATGG TGCACCATAGCATAGCCATATTGTCATTGCTTTGCTTTGCACAGCCTGGCTGTGGCAGAAATTGTGTCGCATTGCTTTGT TTTGGAGAAGTAATTGTGGCCTGAGGTAGGCTGATTGTTGACAAATTGTGGCCATCACGGCCACTATGGTTTACTTTTTA GGCTATTGAATCCCTGTTCGGCCCCAATGTTGTTTGACTTGTATTCAGATATTTAAGGTGATTTTGAAATATCATCTGTT TTCCCCTTCAGAATGAAAATAGTGTTTAGATCTTGTCGTTGTTTGAAGAATGATGCTCTCTTTTCTTTCGCACCATCTGT CTACGGCTGGTAATACACTTTTTTGTTAAAATCTTGCTTTTCTAGCAGCCCAACATATTTTCTGGAAGCCCTTTAACCTC TGTTCTGTCGCTCCTTCTTCCAGCTCTATGCTCAATTCATATTCCAGATCTATCTTTTTTAAATATAAATTTTTTCCATG ATTCCATCATGTGTTTCTGTTTTCTATGAGACACAGCCTATCTGTCCTCTATTCTGTTTCTTTTCGGCTGTTGATTATAT ATTCCAGCCTAGCCATTGCGTCATTTGTCACAATCAGCTTAACAAAGAACTTCGGCCTCAGCTTCAGTCTCTTCTCATTG TTACTAACTTTCTAATTATGCCTTTAGACTGGTGGTGATTTTGTGTCTAAACTATGAATTCTGATATTTAATAATGATAT GTATTTTGTTTTTACTAATTTTTTTATTATTATTTTGAGCATTTATATGTGTGGTATCAATTACAAAACCTTTTCTTTAT CTTTGGCAGCAATCCCACTATCTGCTATCCCACTATGAAAGTTAAAGGGTTGGCCGTTCCACATTTCTATTCTAGATTGA CCAACTATGTCTAACTCCATCATATGGGACTAGGCTTGATTATTTTAGTTGGTCATCACTTAAATGGATTCCATCTTTCT TATATAATTACTGCCACTGGCTAACATAGTAACATCATGGTAATTTTTAATTGTAAATGTCTTCTCTCTGACATTTTATG AATCAAAGTGTTCACTGTAATAGCAGTACTGCAGTAGTGACTAGTGACTTGGTAGAATTAAATAGAAATATGAATGTGCT TACTGACATAATATCTGATGCATTTATTGGTACGCTAGTACGGTGATTCCTTCCCCTTGCTGAATATCTAGTATTTAAAT TTGAAAGATAAATATTTTATCATAATTATCGCCCTATTTAGTTATTGTAACATTTATTGCATTATTTGATCTGTGAAGGT AATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCAGATGAACGTAAGTTTT TGTTTCTTTCCAACTCTACCAAAAGAGTATGCACACACAATTTTTTCAACCCATTTGATACTTGTTCATGGAATTGTGTC AACAGATGGTGCTAGGGCAGCTTTAAATCTTGGTGGCACTGTGCTCGGATACTATCCAGTGAGGGTCCTTCCTTCAAAAA CTGCTATCCTTCCCGTGAATCCTACATTCCTCCCTAGGGTATGAAAGCTTTCTGCTCCTTGCTATACTTACCCATAGTTA GATTGAAAGTAAAGTCAAATTTTTTTTTCTTTTCTAAATTCATAGATTAACCCTCTTGCTTGTGATAAGACTATGACAAT TTATTTGACTGATCTTTGGTGTTAAGCTGATGCCTTTCTGTACATTACACCGATAGTTGCTCAGTGCTGTTGAAAAAAGT AAATCAGAACATTTCATGTTTACCATCTACGTTTTGTTTTGAAGCACAATTTATCCTATCTTCTAGTCCTCCTTTCATGT TTGATTTGTCTGTTTCCGATATTTTTTTCCTAATATAAAAAGGCTGTACTTTATTGATAACTATGCTTTGCTTTGTGTAT GTGTTATTTGAGGCGTAAGTGACTGTTCAAATGTCTAGTCTATTAATTTTTTTCCTTGCTACATGCAGTCGGATGATGAG CGGGAAATGTGTTCCAGGACTGTCTATTGTACAAATATTGATAAAAAGGTATATGTTTTTTTTTTGGAGAATTACAAAAT AATTATTTATGGTAAAAGTATTTGTCAAATAACCAATTACCCCAAAAGCTTCAGCTATTGGGTAAGGACCACATGAATGG TTTTATATTGTATTTCTAACACCCCCCCTCACGCAGAGCCCACTAGTGTTTGAAGTGTGAATAATGCACAAGTCCCACCT ACTATGTGCTGAATCTTTTTTATTAGAGTAATTGGGGGGGAGGGGGGGGGGGAGGAGGATCGAACTCTAGACCACTTGGT CACATCAAATAACCAATTATCCCCAAAGCTTAAGCTATTGGGTAAGGGACACATGAATCGTTTAATATTATATTTCTAAC AGTATTTTTAGTTAGGGAACATTAGCCACTGAACCGATTAACAAGATTCAATGAGTATATCACTTGAATTAATTAACCAT TTTTAATGTGTTTACCAGGATAATTATAACATAATGCATATATGATTGGCATAGATGAATATCAGGTTTATATGTCTTGA GGCATTGTTAACTCTCTCCATTATGTGTGTAGATTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGTGAG GTCAGAGATCTTGTTTCATGCTATTTGCTGGCAAATATTTATTTGAGAAGTTAAATATTGGTTGACATGGCCTTTCTATT GCACAGGTTACACGCTTGAGGCTTTTGGGGGATCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCATTGGTAAG TCTTGAATATGTCAATGCTTTATAAGCTAGCTGCAATACATTTCATATTTGTAAGGATAACTGGATCGTGAACAAGTTAT TCAGCCTATCTTGATTATTTTATGGAATCTATATGCATCTATGTGCTTTTTGTTCTTCTTGTCAATGGCAACTATTGTAC GATTTTGTTTTTTTACTGTTTTTTCTTTTCTTCTGATACTTGAACGAAATGAATCATTAGGATTCTTTGTTTTTTTCTTT AAATTATCTCTATGGACACAACACATGCTCTGCTTTTTGGGCCCTATTGTCTTGTCCAGTGGTTAATTCCTTTTGAAGTT CACACCTGTATTAATATCGTCTTGTCCACTTGTTAATTCCTTTTGAAGTTCGCACCTGTATTAGTATCGAAGTTCTCACA AAGTGCATTTGTATTATCTATTTTTTATTAAAATTTACTTAGTAACTGAGTTGTTAATTTACCACCCTCAGGGGTAGTTT ATGTCCAACCAACATAGCGGTTATTAGTGTCTTTCAAAAAAGTGGATGGAGGTGAGGAGTTTTAACAAAGATCCTTCTTT TGGTTAAAAAATTGAGCTGAGGGAGTGAAAAATGAGGGGTTAAAAATATCTCCTCAACGAGTTTTGTATCCCTCCTAAAG GTAATCTTTTTTAGGCGGACAGGGGCTGGGGGTAAATATTTTTGGTCCTCCCGTTGTACCGAACACTCGGTACTCCCCTT ATATAAAATCAGCGTAATAGTGAGTTTTTATAATTTATATTTTTTTTAAATGTTAAAAGTATGAATAACTAACCATACAT GGGTAGGTGTCATAGCACAACTCACAATACGAACGGGAGAAGTACTCACCACTTAGTACCACAGGGGTACTATAGATTTT TCGGTGGAGGGGAGGAAGAGGGCTTAAAACATGTTGATAGTGTTGACTAAAATATTCGTTTTATTTTTAATTTCAAAACT GTCCTGACATACTTTGTCTGTAATAATCCTCTTATAAATGCTACTTGTTTCTCCAACATCACTCCAAGACATAGTAGTCA ATGTTTCTTTTGTTTTCTTTCTCCCACCTATTGGATTACTTATTTCCCCCTTTTCCTTTCACGTCAAATGCAGGGTTATT TTTCTCCCCTCCCCTCCCCTTCAGCCAAACCATACAAGGATTTTTATCTTCTCATTTACTCATTTTCCCTTCCTCTTTTG AACCAAACAGTTGTTAGTTTGAGCACAGGATGGATAAGTAAGAGTTCACTGACATCCTGACTTGTTCTTTGTAGTTGTTA ACTAATTGGATCTTCACATATCTTGATGATGTTCCTGAGTATAAGGATGCTTGAATGAAATTCTTTTATTTTCATAAATT GTTGAAAATTTTGGCCAACTATGGAATCATCAAAGTTTTGTCTCTCAAAATTACCATAAGAATGTTTACATTTTGCTTGA TTTGAAGATTTTAATGACTTCATTTGTGATGTGCTTACTGGCATGAATTTGTTAACTTGCACAAGAGAGTCGTTATGTTG TTGACTGGCTATTTCTTTCTTATTGAGTAGGCAGAAAGTGCTATCGTTGCGCTTAATTGTAGTGGGATGCTCTTGGGAAC CCAGCCTGTCAGGTGTGATGCCTTTATTGGGAGGAAAAATGCAAACAACACTCAAACACTATCTAACACAGTCTATTTAT TGGTTGAAATTCATGTGGGGTTTTGGATTATCGTTAGAAAGTTTGGAAGTGGAAGAGTAACACATCCTGAAGCATGTTTT GTTGAAGTAGCAAGTTGCTACTTGAACAATGCCTCATGATGTGTTATATTTCTGTTTTCATAGGTAAACCAAACATACTC TAAAATGTGGGACCCGCATACATTTCAACTGATAAATGAGAGTGTTGGGGTCAGTGTTGCTAGCACGCGACTTAGCTGGA GTTGTTTTTGTAATGCAAGTCTCAACTGAAGTCAGTTTGGTAATATTTGCTTTTCCTTATTTTGTAGGGTAAGTCCATCA AAGACTCCAGTGAGGCCAAGGGTCACTCGGCCAACGTCACATTGACATGAGAAGGTTATTTGGTCAACTTTCCAGTTGAG ACTTGTGTGGAAGGGGTGGTGAAACTTCCCTTTTTTTTCAGTATTTCCATCTTTTGTCACAACAGTTACACTTCGTTGCC AGAGAGAGCCTAAATGTTCAGCTCTAATTAAACTTTCTAGCGACCATATTTTATCTTAAAATGTTTTACTATGTCTACAT TGAAGTGGCCTAGTTTCAGTCATTGTTATTTGGACAGAGCATTCATCATACTTTTCTTAGATTAGAGATGAAAAAAACTT AGATACAGTATTATGGGTAGTGGGTATTGTTTCTGCTGTTTCCTAATGAAAAGTTTAGTCACTCACTTTATTAATATGGT AATTACCTCCATTTTCACTTTTTTAACCCACTTGTCATGTTGTGATGGGATAACAGTAAAAACAGCTCTCATGAAACTGT GCCTAAGTTTTGTCCATTAAAGATTT
CDS sequence (LotjaGi3g1v0146200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCGGTTGCTGACATTTCCGCCGCTGATGCCAACAAAATGGACTCAAAACCAAAGCCAGAATCAGAATTCACTGT GCAGAAGCTGGTTGACATGTTCACAAAGCTGAATCCTTTGGCCAAGGAGTTTTTTCCTTCATCATATTCTCTCCACAATC TTGATGATCATCATCGCCATCAGGGCTATAATAATCAGCTCACACCTACCCATTTTCTGGTCAACACTACTAAGCCATCA GCTAATGACAATTACCTTAACAATCGAAGGAGAAGAAACAGTTTTAACCAAGGGAAGAGAAGGTTGAATGGAAGATCACT AAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTGTATGTTTCTGATATTGATCAGCATGTTACCGAGGAACGGCTTG CCGCCTTATTCACTGGCTGCGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTTCGTTTTGCTTTT GTCGAGTTTGCAGATGAACATGGTGCTAGGGCAGCTTTAAATCTTGGTGGCACTGTGCTCGGATACTATCCAGTGAGGGT CCTTCCTTCAAAAACTGCTATCCTTCCCGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTTCCA GGACTGTCTATTGTACAAATATTGATAAAAAGATTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGTGAG GTTACACGCTTGAGGCTTTTGGGGGATCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCATTGGCAGAAAGTGC TATCGTTGCGCTTAATTGTAGTGGGATGCTCTTGGGAACCCAGCCTGTCAGGGTAAGTCCATCAAAGACTCCAGTGAGGC CAAGGGTCACTCGGCCAACGTCACATTGA
Protein sequence (LotjaGi3g1v0146200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAVADISAADANKMDSKPKPESEFTVQKLVDMFTKLNPLAKEFFPSSYSLHNLDDHHRHQGYNNQLTPTHFLVNTTKPS ANDNYLNNRRRRNSFNQGKRRLNGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFTGCGQVIDCRICGDPHSVLRFAF VEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKISQAEVKNFFESACGE VTRLRLLGDHVHSTRIAFVEFALAESAIVALNCSGMLLGTQPVRVSPSKTPVRPRVTRPTSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 17 | 301 | 285 | 3.0E-153 | – | |
| PANTHER | 17 | 301 | 285 | 3.0E-153 | – | |
| Pfam | 33 | 49 | 17 | 5.0E-5 | ||
| MobiDBLite | 78 | 92 | 15 | - | – | |
| MobiDBLite | 78 | 108 | 31 | - | – | |
| Gene3D | 79 | 193 | 115 | 1.7E-16 | ||
| SUPERFAMILY | 81 | 193 | 113 | 6.38E-19 | ||
| CDD | 115 | 194 | 80 | 5.74421E-52 | ||
| ProSiteProfiles | 117 | 192 | 76 | 12.97 | ||
| SMART | 118 | 188 | 71 | 3.0E-13 | ||
| Pfam | 119 | 181 | 63 | 2.4E-11 | ||
| Gene3D | 201 | 296 | 96 | 4.3E-14 | ||
| SUPERFAMILY | 204 | 296 | 93 | 5.84E-16 | ||
| CDD | 210 | 291 | 82 | 1.43165E-55 | ||
| ProSiteProfiles | 214 | 290 | 77 | 12.27 | ||
| SMART | 215 | 286 | 72 | 1.7E-12 | ||
| Pfam | 216 | 282 | 67 | 4.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0146200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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