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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0146600 |
| Transcript ID | LotjaGi3g1v0146600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Interactor of constitutive active ROPs protein, putative; TAIR: AT1G78430.1 ROP interactive partner 2; Swiss-Prot: sp|Q9M9F9|ICR4_ARATH Interactor of constitutive active ROPs 4; TrEMBL-Plants: tr|V7BW93|V7BW93_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0146600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19602060..19605220) extracted from Lotus japonicus Gifu genome v1.2.
TGGTAGTAAAGACATGCTCGTTTTAGCATGTCATTGTTTGAACTTTGAACACAGAACCTGTGTGATATGTGGGGCATTTT TATTCACCTTTTCATTATTTTCTCTTCTTGTTTTTTTCTGAAAGTTCCATATCTACCTTTCTAGTTTGTACTGGAAGATA ATTCTTAGTATCTTCGGTTTAAATCAATTGCCTTTTAGTTTAATAGTCACGGTTGTAGTGAGTTGTCTCCTTTATGTGGG TTCAAGGCCATAAATATTCATAGCCATTGATGTTTTTCTTTGTCCTTCAATCTCTTACCTAATTATGGTTTCTTGGAGGT TGAGGCCAGATCCCAGATGGCAGAATATGAAAGCCTAACCACTATTAACTTGAAAATAGTCCATTTTGCTTAATGGTGTC TTTAAAGAAGGCCAGTGAAATCTGGAACTGGAAGGCCATTTTCTCATTATCCTTTCTCTTCTGTTAAAAGAATGGTGGTG AATGTCAATACAAAATTGCTGAGTTCAATGCTCCCCACTCTACCTCTTTTATTATAAATGATGGTACATTGTTTCTTGTG TCAGGTTCTGCCCATGGGCCTTAATTCTTGATTTTCTATTTTGAAAAAATAAATATATTTCTATTATGTATACTGCATAT TTATCTCTAGTTTGTGCTATATTGGATGGAGTTAGTTGGTCATACATTTTATTCATTTGAACTTTCATCTTTGTTACTTT TAGCAGGTGAGACACATTTAGCTAACAAATTTTTGAAGTGCTGATCTACTAATTGCTAATCAAATCAAGCATATAAAATG CCAAGATCAAGGTATGATTAGCTTACCCATCAGCTATATAATGCTGTGCTTCCTAATTCTAGTTTCTCTATCTCTATGTT CTCTGTTTTCCTTTTTCATATACAAAGCAATGCATGTCATACTTGGTGCTGATTGTTGTTGGTATCTCTTCTGCATCTTT AGATTTGGTTTTTCCCTGATTCTAATTTTCTCCTTTTGTGAAGCATAACATGTTTATGATGATAGGAAATATCATAACTG TTAATAATGAAAACTACTTTTTAGCCAGCACTAAATTCAACATAAGTCTTGGCTTTTTGATCAAGATGTTGGGAGTGAGA TTCTTGTGACATTGATAATAGGAAATTTTGTTCAACTTAATGATGCACATCCGATAACATCCTAAGTTTCTATTAGTGTT TGGTTCTCCAGTAGAAAACTCCATAATTGTTTATGGGGAAAAGCAACAGAGTGTTGTTTTTTTGGAGTTATCATGCCTTG GATTGTATGCTCACTATCAACCTAAACACACTATAATTTGATTTAGTTTGTTAAGAACATCAATAGATAATCCCTATAAG GATGGAATTCAAGATCACCACTGTGAAGATGGAACCATGGTCTCTCTGCTTCTGCTTTTTGTCTATGTTGTTATTTGATC TTTGTGCTACTAATCATGTAATGAAAAATTTAGTGAAATTGAGTTATCAAACTACAATCATGATATGGAACATGTAAGTT TCTATGTTGTGTCCAATGATGAGAAGGGCCAATTCAAATATCTGTTTCTGTATGTAGTTTTTGAAGAACCTCTCTTTAAT TTGTTTTTTCTTGTATAGGGGATCTGATTTGCCTCAGAGGCAGTCTCCACGAGGTCCTCATCAACTTCGCACATCGAGTT CTGATTCAGATCCGTTACATCATCGACCGATTGCCGACCGAAGTCCAAAGGTTGGAGACCGGCGTTCGCCAAGAAGTACA ACTACTCAATCTGATAATACTCTAAATCAGAAAAAGCTAGGAACCCGCATTGCGGATTTGGAATCTCAGCTTGGCCAAGC ACAGAAAGAGTTGAAAAACTTGAAGGACCAGCTAGCTTCTGCTGAAGCTGCAAAGAAAGAAGCGCAAGAAAAACTAGTTA AGAAAGCTGATCAATCAGTAGTAGTGCCAGTAGTGGAGAAGTTCCAAGAGAAGCGTGCTTCCGAGAACGCTCGAGAATTT AATGAAACTGAAAACAAGCCCCAAGATATCATCATTCCTGATAATGACATTGAAAACCATCAAGAAACTGATGTGTTTGA AGTTGTTCCAATTGAGAAGGTGGCAATTGAATTCACAAAACCTGCAACAACAGATCAAATTGAAAAGGAAACTCAACCAT CTGAAGACTCAACAACTCCACCAGATGCACCGAAGCCGGAAATACCTTGTGTGGATGAAATGACCCTGAAGAATGACGAG ATAGCATTGCTGAAGTGTAATTTGGAAGAGAAAGTGACGGAGCTAGAGTCAATGAGTAAGGAAAATGAGAATCTGAAACA ACAGCTTAATGAAGCAGTTTCAAAAGTTTCAGAAGCTGAAACCAAGGAAGAAGGAATGAAGTTGCAGCTGAAAGAACTAG GTGAAGAGTTGGAAGCTGCTAGTAAACTGAATGCAGAGAAGTTGAAATGTGTGGAAGCAGAAAAGGAGGTTATGGAATCA GAGATGAAGAAGCTGAGGGTGCAGACTGAGCAGTGGAGAAAAGCAGCCGATGCAGCAGCAGCAGTGCTTGCAGGGGATGT GGATATGAGGATTCCTGAACGGTGTGGCTCCATGGATAAGCACTTTGAGACACCTGTTGTTGGTAGGTACAATGGATATG TTGGGTCTCCTGGTGTGGCTGATGACTTTGACGATGGTTTTGGAGGCGGAAAAAAGAAGGGTTCTGGAATTAGAATGTTC GGCGATTTATGGAAGAAAAGGGGCCAAAAGTGATTGATTTCTGCTCCTATTATTCAGTGAATGAAGTAGTAGTAGTACTT TAGTCATGTTTTTGGTGGTAGAAGAAGGTGCAATAGCAGTTGCTTACTGTGGTGCATCTTCTTCATACATATTGTTGTCA TTTCTGGTATGAAGGCCATTAAGCGGGTAGTGTTGTTGCTATTGTATGATCTGTGAATGTGAACTTGTGAAAGATGGTTT ATATCCCTTCTCTTAGGGAGAGATGAAGGCACTTTTTCTTGGAAGGCCTGTTTTTAATCAAATTCTTCATTCTGCACTCA GTTACAGTAATAATATATTTAGAGTTCGTTTGTATGAGGGTTCACATCGCCTTAAACACACGTATTTTCTGAATTGACAA TGTATAGCTGTTGGAGCAACGCACGTATGGGTGGTTCAAAC
CDS sequence (LotjaGi3g1v0146600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAAGATCAAGGGGATCTGATTTGCCTCAGAGGCAGTCTCCACGAGGTCCTCATCAACTTCGCACATCGAGTTCTGA TTCAGATCCGTTACATCATCGACCGATTGCCGACCGAAGTCCAAAGGTTGGAGACCGGCGTTCGCCAAGAAGTACAACTA CTCAATCTGATAATACTCTAAATCAGAAAAAGCTAGGAACCCGCATTGCGGATTTGGAATCTCAGCTTGGCCAAGCACAG AAAGAGTTGAAAAACTTGAAGGACCAGCTAGCTTCTGCTGAAGCTGCAAAGAAAGAAGCGCAAGAAAAACTAGTTAAGAA AGCTGATCAATCAGTAGTAGTGCCAGTAGTGGAGAAGTTCCAAGAGAAGCGTGCTTCCGAGAACGCTCGAGAATTTAATG AAACTGAAAACAAGCCCCAAGATATCATCATTCCTGATAATGACATTGAAAACCATCAAGAAACTGATGTGTTTGAAGTT GTTCCAATTGAGAAGGTGGCAATTGAATTCACAAAACCTGCAACAACAGATCAAATTGAAAAGGAAACTCAACCATCTGA AGACTCAACAACTCCACCAGATGCACCGAAGCCGGAAATACCTTGTGTGGATGAAATGACCCTGAAGAATGACGAGATAG CATTGCTGAAGTGTAATTTGGAAGAGAAAGTGACGGAGCTAGAGTCAATGAGTAAGGAAAATGAGAATCTGAAACAACAG CTTAATGAAGCAGTTTCAAAAGTTTCAGAAGCTGAAACCAAGGAAGAAGGAATGAAGTTGCAGCTGAAAGAACTAGGTGA AGAGTTGGAAGCTGCTAGTAAACTGAATGCAGAGAAGTTGAAATGTGTGGAAGCAGAAAAGGAGGTTATGGAATCAGAGA TGAAGAAGCTGAGGGTGCAGACTGAGCAGTGGAGAAAAGCAGCCGATGCAGCAGCAGCAGTGCTTGCAGGGGATGTGGAT ATGAGGATTCCTGAACGGTGTGGCTCCATGGATAAGCACTTTGAGACACCTGTTGTTGGTAGGTACAATGGATATGTTGG GTCTCCTGGTGTGGCTGATGACTTTGACGATGGTTTTGGAGGCGGAAAAAAGAAGGGTTCTGGAATTAGAATGTTCGGCG ATTTATGGAAGAAAAGGGGCCAAAAGTGA
Protein sequence (LotjaGi3g1v0146600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRSRGSDLPQRQSPRGPHQLRTSSSDSDPLHHRPIADRSPKVGDRRSPRSTTTQSDNTLNQKKLGTRIADLESQLGQAQ KELKNLKDQLASAEAAKKEAQEKLVKKADQSVVVPVVEKFQEKRASENAREFNETENKPQDIIIPDNDIENHQETDVFEV VPIEKVAIEFTKPATTDQIEKETQPSEDSTTPPDAPKPEIPCVDEMTLKNDEIALLKCNLEEKVTELESMSKENENLKQQ LNEAVSKVSEAETKEEGMKLQLKELGEELEAASKLNAEKLKCVEAEKEVMESEMKKLRVQTEQWRKAADAAAAVLAGDVD MRIPERCGSMDKHFETPVVGRYNGYVGSPGVADDFDDGFGGGKKKGSGIRMFGDLWKKRGQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 382 | 382 | 2.6E-137 | – | |
| PANTHER | 1 | 382 | 382 | 2.6E-137 | ||
| MobiDBLite | 1 | 68 | 68 | - | – | |
| MobiDBLite | 7 | 25 | 19 | - | – | |
| MobiDBLite | 26 | 46 | 21 | - | – | |
| MobiDBLite | 47 | 65 | 19 | - | – | |
| Coils | 62 | 110 | 49 | - | – | |
| MobiDBLite | 123 | 156 | 34 | - | – | |
| MobiDBLite | 171 | 202 | 32 | - | – | |
| Coils | 213 | 307 | 95 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0146600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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