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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029688
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.529s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0005709.1
n.a. Interactor of constitutive active ROPs [Medicago truncatula] gi|357453747|ref|XP_003597154.1| chr0 2154352 2155105 -
2 domain predictions
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Lj0g3v0024499.1
n.a. PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Glycine max] gi|356572411|ref|XP_003554362.1| chr0 9770352 9771070 -
2 domain predictions
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Lj0g3v0137099.1
n.a. PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max] gi|356539100|ref|XP_003538038.1| chr0 62940110 62941051 -
2 domain predictions
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Lj0g3v0240709.1
n.a. PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max] gi|356539100|ref|XP_003538038.1| chr0 124929660 124930067 -
2 domain predictions
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Lj0g3v0317209.1
n.a. PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max] gi|356539100|ref|XP_003538038.1| chr0 165708208 165718603 +
2 domain predictions
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Lj0g3v0343269.1
n.a. PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max] gi|356539100|ref|XP_003538038.1| chr0 179951260 179952273 -
2 domain predictions
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Lj3g3v1015390.1
n.a. PREDICTED: interactor of constitutive active ROPs 1-like isoform 1 [Glycine max] gi|356556916|ref|XP_003546766.1| chr3 13595052 13599460 +
2 domain predictions
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Lj3g3v2310020.2
n.a. PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max] gi|356539100|ref|XP_003538038.1| chr3 28148363 28153399 +
2 domain predictions
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Lj3g3v2310030.1
n.a. PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max] gi|356539100|ref|XP_003538038.1| chr3 28154554 28155177 +
2 domain predictions
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Lj5g3v0616420.1
n.a. PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Glycine max] gi|356548216|ref|XP_003542499.1| chr5 8269539 8272320 -
2 domain predictions
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Lj5g3v0616420.2
n.a. PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Glycine max] gi|356548216|ref|XP_003542499.1| chr5 8269539 8274439 -
2 domain predictions
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LotjaGi2g1v0364100.1
n.a. Interactor of constitutive active ROPs-like protein; TAIR: AT5G60210.1 ROP interactive partner 5; Swiss-Prot: sp|Q9LSS5|ICR3_ARATH Interactor of constitutive active ROPs 3; TrEMBL-Plants: tr|I1LKC3|I1LKC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0364100 LjG1.1_chr2 86163991 86171015 +
2 domain predictions
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LotjaGi2g1v0364100.2
n.a. Interactor of constitutive active ROPs-like protein; TAIR: AT5G60210.1 ROP interactive partner 5; Swiss-Prot: sp|Q9LSS5|ICR3_ARATH Interactor of constitutive active ROPs 3; TrEMBL-Plants: tr|I1LKC3|I1LKC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0364100 LjG1.1_chr2 86164002 86171089 +
2 domain predictions
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LotjaGi3g1v0146600.1
n.a. Interactor of constitutive active ROPs protein, putative; TAIR: AT1G78430.1 ROP interactive partner 2; Swiss-Prot: sp|Q9M9F9|ICR4_ARATH Interactor of constitutive active ROPs 4; TrEMBL-Plants: tr|V7BW93|V7BW93_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0146600 LjG1.1_chr3 19600255 19605501 +
2 domain predictions
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LotjaGi3g1v0146600.2
n.a. Interactor of constitutive active ROPs protein, putative; TAIR: AT1G78430.1 ROP interactive partner 2; Swiss-Prot: sp|Q9M9F9|ICR4_ARATH Interactor of constitutive active ROPs 4; TrEMBL-Plants: tr|V7BW93|V7BW93_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0146600 LjG1.1_chr3 19601671 19605367 +
2 domain predictions
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LotjaGi3g1v0146600.3
n.a. Interactor of constitutive active ROPs protein, putative; TAIR: AT1G78430.1 ROP interactive partner 2; Swiss-Prot: sp|Q9M9F9|ICR4_ARATH Interactor of constitutive active ROPs 4; TrEMBL-Plants: tr|V7BW93|V7BW93_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0146600 LjG1.1_chr3 19602060 19605220 +
2 domain predictions
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LotjaGi3g1v0161100.1
n.a. Interactor of constitutive active ROPs-like protein; TAIR: AT5G60210.1 ROP interactive partner 5; Swiss-Prot: sp|Q9LSS5|ICR3_ARATH Interactor of constitutive active ROPs 3; TrEMBL-Plants: tr|A0A151SUZ5|A0A151SUZ5_CAJCA Interactor of constitutive active ROPs 3; Found in the gene: LotjaGi3g1v0161100 LjG1.1_chr3 21950391 21960733 +
2 domain predictions
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LotjaGi3g1v0161200_LC.1
n.a. Interactor of constitutive active ROPs-like protein; TAIR: AT5G60210.1 ROP interactive partner 5; Swiss-Prot: sp|Q9LSS5|ICR3_ARATH Interactor of constitutive active ROPs 3; TrEMBL-Plants: tr|A0A151SUZ5|A0A151SUZ5_CAJCA Interactor of constitutive active ROPs 3; Found in the gene: LotjaGi3g1v0161200_LC LjG1.1_chr3 21974747 21977331 +
2 domain predictions
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LotjaGi5g1v0075200.1
n.a. Interactor of constitutive active ROPs 2, chloroplastic; TAIR: AT2G37080.3 ROP interactive partner 3; Swiss-Prot: sp|Q9ZQC5|ICR2_ARATH Interactor of constitutive active ROPs 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7GK72|A0A1J7GK72_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0075200 LjG1.1_chr5 12432023 12436901 -
2 domain predictions
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