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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0147800 |
| Transcript ID | LotjaGi3g1v0147800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L18a, putative; TAIR: AT1G17080.1 Ribosomal protein L18ae family; Swiss-Prot: sp|Q8L9S1|R18AL_ARATH 60S ribosomal protein L18a-like protein; TrEMBL-Plants: tr|V7BXN9|V7BXN9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0147800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19895219..19899141) extracted from Lotus japonicus Gifu genome v1.2.
TCACAATACTAAGTGCATCCACCTAACAATAAGCATTAATTACTTCTCCATTCATCTCCACAGAAACAACCCACACTTCC TCAAACCATCCCCAGTCAAAGCCTCTTTCTTTCATCACTGAGTGAATTGAAAGAAACATGACCGACGACGAAAAACCCAG AGGTTTCTCCGGCTCCGGCTCCGGCTCCGGCGAGCCTCACCACCCTCCTCCACCGCAGCCCCTTCCCTATCCGCCGCCTC AATACGGCACCTTCCAAGGCGTCTCCAACTACCCTCCTCCCCGGCCAGGCCCTCACCCCGCCATCGGCTTCCCTCAGCCC GTCCCGCCTCCCGGCGCCGGCGGCCCATCCGCCCCTCCTCCGCCGTATCTCCCTCACGGGGGCTACCAAGCTGTTACCGG TATGGCTCTGCTCCTCTGGGTCGTCTTCTTTTGATTATTGATTTTTGGGTTTGAAATGAAAATTGGATAATTTCATTCTA GGATGGTATATTTGATGATCTGTGTGATGGGTTTGATCAAAGATTGGAAATTTCGAGATGGGTTTGGTTTTATTCAATTC TGATTGAATTGTTTGCTCATGCTTTGTGTGTGTATAATATAACTCGATGCATGTTAATTTAGCAGCTGCGAGATATAGTT GTTGATCAACTATCTCTGTGTGAAATATTTGGTTTAAGTAAAAGTTTTTATGCTTGGGTTGACTTAGGCTAACTTCAAAT TCTTGATATATTTTGCAACATGTTGTTGAGTGTTGACTGTTTGTTAGTCTAGAATACAATGAATTTGATTGATGGCTGTT GATTCGAGGTTTACCTCTAACTCTCTATGATCAAACTGGGACACTTAAGTTTCGGGATCAGGATGAGTAGGTTGTTTGAT AATTTTGTTGAATTACCGGATCTACTTTGTTTGATAATTTTACCATTCTCATCGAGATATGTATTATGTATATGCTGTTC TGATTAAGAGTTATGTTATCATATGAACAATTGGGTTCGTGTATTGAGCAATCCTTTTGGTGGCATGAAAATGGGTTGGT GAGAAATTATGCACCGTTCATCTAGAAAAGGCTAATATGATCATGTTAGAAGGAAGTTATGTATAGTTGGTTTATATATT TGAGAATTTGATGGATATGAGTTTGACTATGATATGTAGTGTAACAGAATTCGTTGTCCTGCTCACTAGATTTTGATTGT TTCCTCTGTGATACTGATTCAGGTTATGCAATTGCTGAAGGAAGACCTGTGAGAGAAAGGCGCCTTGGTTGCTGTGGTAT TGGTTGCGGGTGGTGCCTGTAAGTAAATTTCCAGTGTAGCGGTTTTGTAGATAACTAGATATGATGAGGTCCAGAATATT TATACGTATCTTACAATCCAAATCTAAGTGATACCTCATAGCCTGTTCCGTTGGTTAAAACTTAAAAGTGCTATTCCATG TAATGGAAGAAGGCTCTATCATTTCTATTTGTTGTAGAGTATGTGATCACCGGTCTTTCTTTGGCTTTAACTAACCAGGA AGTACACACACATTCATTTCACTACGGGTATTAACATTCATTGCTTCAGATTATATGTGTTCACCTCTATTTTTTGTTTG TGGATAATTGCATCAACTTATGTCAATCTTCTACCGCCATTAACACTTTCATGGAAGGAAATTCATTTAAAGCTAGACAA CTTAAATCTTAAAATTTCAAATTTGTCTCTTTGACTTCCAATGTGCTTTTATCTTTGATCTTATTGGATACCAAGAGAAA ATTGAAACGATTTCTGATTTTGAATTATGATGGGTGTCTTTTTAATACATTTTTTTAGAAGAGAAATCATTCAACATCAT ATTATGATTTGTGATTGCAAATTTCCTTATGGGAGTTGAATACCATAGCTTTCTCATTATGCTTGCTGGGCTATAAAATT TATTACTATGTGAGAGGGTGAGATGAGGGAAATGGCATAGAATTTGCCATTTCATGAGACCCTTCTCGAACATCAACTAT ATGTTTTTAAAAATGGTCACCTTCCAGGAAGCCTGCTTTGAATTTTCAGCAGTTTGTTTCTTCTATAGGTGTCTACACCT TTTCAGTATTAACAGTAACCCATTCCCACCTCTTTCTCCATTGATTCTGATAGGAAAATTATTGTAGGCATGTAGCATTT ATTTTGACCAGCTTATGATGGATTAGGCTGAAATCATAATTTGTCATTTTAAGGCGTGGCCAACATTTGTCATTGGCTAC TATCACCATAAACCAAAGTTGACACACTGTATTCAGAATTTGAAACACCAAAACTGTTCACATGATTCACTATGCCTTTC TTTAATTTTTGCTGAAAACATTTCAATTTAGCATTGTTCATATCGTTTAGAAAGTATTATATCCTGTCTTGGTTGTGTAT GTTTTTCTTTATAGTACCAATTAACTTGCACCAGGTAGATAATTTCAGTTTTTACCTGATTATATGGGTATGAGATGGGT ATGGTTCATACATGCTTCTATCCTCACCTTTTTCTGTTTAGTATGATCTTGCAAACATGCTGGAACTGTTTGGGATGTTT TCTCTTATTTTATCCATTATAATTGCCAAGTCTCATATTTGTTATTTTCCTTTTGTATTATTAGCCACTTTTAAAGTTAA TATTGGGTTGATTTCCAGTAATTTTTCCTGTTGTGTAGGTTTATATTAGGTTTCTTTCTTGGTGGTATTCCATGGTATGT TGGGGCAATAATTATGCTTTGTTCCAGAGTAGACTATCGAGAGAAACCCGGATATATTGCTTGTATAGTTGGTGTAAGTG ATTCCATCCTTTCATTTTTCGCTTAAGCCTATTCACTTCTAATTTCTTTTTATTTTATTTTATTTGCTGTACCATTACTT GTTTGAATTTTAGTAGATACACGACGGGTATTATTCAGTGTTGTGGGCATAAACCGGTAATCATTTTGGAGGTTTTGATC TCCTGATCATCCAAGCTTTTATGTAGTTAGCTGCATGTTGCATAATTGTTAAACTTAAGATGAGCTTGTAAAGTATAATG GATTTGAACTTTTGAAGTCTATGCACTGTTAGTGTAAAATTTGTTTACTTAAACATCCAATTGTTTTCGCCAAATTAGAA AATAATTTCTTATTTTAATTAGAATAAATAAGAAATATAACTGCCCCTAGAATGTGGTCCTATATGACATAGCAAGATTG GATGCCAGTTTGAAATTGTTGTTCTACGCTGGCAGTGCATGAAAATTAACTCATGTATAATTAGATTGTGGATTAAATTT CTTGAAGTTGTTTTGACTTTTAATTACTTCTAGCTGTATCAAATCGTTCCATAGTGTATGAAAAGGCACCTATAATAACA CTAGCTTTGTGTGATTGCTTTTGCAGGCTGTTCTGGGCACAATTGCCATTATTGTTGGAGCCACAAAGGGAGCAGACGAC TGGTAATCTTCTCGCCAAGAGGTGTAAAGTTTGCTAGTCGTCGAGTGTATCTAAAGTGTATTTATTAGTTACTGGAAAAT ATGAGCAAGTTTGGTTTGCCATATTCATTTTAAACTGCCACCTTATGTAATTTGTATGCTATTGACTAACACAGAAGACA ATAATCGTGATACTGAAACAGGTCTGGTTTATTATGACTCCTTAGTATTTAATACAATTTGACCAATGCAATGGAATCAG GTTGTACAGATTGTTTTTTTTTTTGTAGGTATAATTTGAAATTTCATTAATTAAAGAGACGAAATGTTTGAAATTTGACA GTAAAATTTAGAAAATAAAAAAGGAGTTAAAAATTGTCTGACATTTTATTGAGAGATTAGAATGAAAATTACTATTTCAT ACATTACATAAAACACAAATCATACATCCAAAAATTAAACAACCATCACCACAATTTAAATAAACTTAACCTTCATTCTA GAA
CDS sequence (LotjaGi3g1v0147800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGACGACGAAAAACCCAGAGGTTTCTCCGGCTCCGGCTCCGGCTCCGGCGAGCCTCACCACCCTCCTCCACCGCA GCCCCTTCCCTATCCGCCGCCTCAATACGGCACCTTCCAAGGCGTCTCCAACTACCCTCCTCCCCGGCCAGGCCCTCACC CCGCCATCGGCTTCCCTCAGCCCGTCCCGCCTCCCGGCGCCGGCGGCCCATCCGCCCCTCCTCCGCCGTATCTCCCTCAC GGGGGCTACCAAGCTGTTACCGGTTATGCAATTGCTGAAGGAAGACCTGTGAGAGAAAGGCGCCTTGGTTGCTGTGGTAT TGGTTGCGGGTGGTGCCTGTTTATATTAGGTTTCTTTCTTGGTGGTATTCCATGGTATGTTGGGGCAATAATTATGCTTT GTTCCAGAGTAGACTATCGAGAGAAACCCGGATATATTGCTTGTATAGTTGGTGCTGTTCTGGGCACAATTGCCATTATT GTTGGAGCCACAAAGGGAGCAGACGACTGGTAA
Protein sequence (LotjaGi3g1v0147800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDDEKPRGFSGSGSGSGEPHHPPPPQPLPYPPPQYGTFQGVSNYPPPRPGPHPAIGFPQPVPPPGAGGPSAPPPPYLPH GGYQAVTGYAIAEGRPVRERRLGCCGIGCGWCLFILGFFLGGIPWYVGAIIMLCSRVDYREKPGYIACIVGAVLGTIAII VGATKGADDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 77 | 77 | - | – | |
| Phobius | 1 | 112 | 112 | - | – | |
| PANTHER | 15 | 170 | 156 | 3.8E-62 | – | |
| PANTHER | 15 | 170 | 156 | 3.8E-62 | – | |
| MobiDBLite | 19 | 35 | 17 | - | – | |
| SUPERFAMILY | 20 | 76 | 57 | 4.97E-5 | – | |
| MobiDBLite | 45 | 77 | 33 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 113 | 133 | 21 | - | – | |
| Phobius | 134 | 144 | 11 | - | – | |
| TMHMM | 144 | 163 | 20 | - | – | |
| Phobius | 145 | 164 | 20 | - | – | |
| Phobius | 165 | 170 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0147800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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