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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0149400 |
Transcript ID | LotjaGi3g1v0149400.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|P48365|GYP7_YEAST GTPase-activating protein GYP7; TrEMBL-Plants: tr|A0A151SKJ0|A0A151SKJ0_CAJCA GTPase-activating protein GYP7; Found in the gene: LotjaGi3g1v0149400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20139131..20145820) extracted from Lotus japonicus Gifu genome v1.2.
TTACGCATTAAACGGCCATTGTTGAGGTCGTGAGGTTGTCAATCATTTTTGACAGGGTATTAGGACTTCTCTTCCTCACA CACACTCACAATTGTTAACCCCACAAAATTGTAAATTCTAAAGAAAACAAAAAAATAATAATTGAAAAAAAGGACATTTT TTTTAGTTTTTTTTGGCTTTGGAGCTTGGTCTTCCCCTTGGCTGGATACCCTTTGAATTCATCACCAAAGATTATAAGGA AGAAGTTGAATTTTTCTTTGTTTTCTTCATCATTTCAAAGGGGTCCATCTCCTAGGTATGCTGGCAAGGATATTCATATA AAAAATATTGCTTTGTGATTTGCATTTTCATTTTCTTGAGCAATCTTTTGGGTAGCTTGGGATGTGGAGAGATCCAGGAG CTCCGGCAGATTCTTTCTATGAAATCCGCCCTGAGTGCACAGATGTTCCCAAGTCAAGATTTAGGATAAAGGTTTGTTTT TCATGCATGCATGCATTATTGGGTTGATAGAAATTATGGTCTTTGATTTAGGATTTATGAATGCATTTGTTCATTCAGAA AGTTTGAGTTTGTGAAGTTAATTAACTGCAACAAGTTTTTGTACATTTGGGATATTATTAATTTGTCATTGCTTATGATT ATATCTTGAAACTTACACATGGATATTTTAGATGGATTGACTTGTAAAAAGATGATATGATGGTGTTTTATCAAAAATGA AAAGATTATGATTGTTGCCTTTAGGTTAGTTTCATAAGGATCTTGGGTTTGAAATGAATTTTGAATTAACTAATGTCATT GAGTATCATGTTTGATCAATTGGAGCCCATTGCATATACGGGGAATCCACTATTCAGAAGATACCTAGGGATGGGTAGCT CACATGGTTGAGCTAAGGGTAATTGTAGGTGAAGGGTCAGGGTTCGAACACTGAGGAGGGATAATTTGTACTAATTTACT AACAACTAACATTTGCCTATAGAAAAAACTATTCAGAAGATACCTTATCAAACATCTAAAAATTTCATAAAATCTATGAT ATTGTCACGAATGAAGGGTGCTTAATTGAATTAAATCATCAATGAAACTTAATATAAAGTAAAATAAGAAATGTGTTGAG ATTAACAAACTATTACAAGATTAAAGGATGCAATGTATCAGCTGGTTATTAATGGATTGATTGCTTTGTTGGATAAGTTC ATCACTTATCAAAGAAGGAAATTTGAGTACAAATAAAATTGCACTTAGTGATTTATGATGGTACAAGATAAATATCTAAT TCCTAATTACTCTTGTTCGGTTTTCATCTCATGAAAAAGTAAAATCTATATTGCATACTTTAATTGGATAGTCTGCACCT TAATTCAGTATTCATATGCCTTCAGCTGAGAACTTGCAGATTTACTTAACTTTTGATCTTTTAACACTAATGTAGTGTTC TTTAAATTTGAACTTCTTTTTGTTATGTGCTCCAGGCTGGTAAAACTCTAAGTGCAAGAAAGTGGCATGCTGCATTTTCT CCCGAAGGGTATTTGGATATAGGCAAGACTCTAAGCCGAATCCACCGTGGGGTAATTGCAATTTTACAATTAAAATGGTG CTTTAATATGTTCAATGATACTAACAAAGTTTATTTACTCTCATAATTCAGTTTAAATGGCATTTCGGTGCATTAGGAAA CTTGACATTTTCAGTAAAACTTGAGTTTCTAGTTCTGTCTGGTAATAAAATATGAGCTTGATTAATGCTTGAAAATTTGG AACTTAACTGACAACTTTTTGTTCCATAATGAACATGAACTCCTATTACCATGGTTGACATAAAAATGCATATAGATTTT TTTTCATAAGACTATCCAAGGTTTTCAGTGCCTGAGCTGAAAAGGTAGCTTGCTATAATCAAGTTGTCTCACTCTATTGA ATATTTTCAAACCAGGGAATTCACCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTCGGTTGCTATGATCCAAAGAG TACATTTGAGGAAAGAGATGAGATAAGGCAGCGCCGAAGGTAATCATATTTTCCTTTTCATAATCCCCTCATTACCATCA GATTTTACATCCTAGAGCGTTTAGAATTCACTGCAATATATGAGGCTTGTGTCTTCCTTTAAAATATAAATGGAATGGCT ATATAATGTTACTACATACTTGATATGCTATGAAATTTATAGATGAATAAAATTTATGTTTGTTGTATTTAGAATTCTAA ATGTAATAGGTTACTAGTTGCATAACATTTCATGTATATATAGGACGCAATATGCTGAATGGAAGGAAGAATGCCGCCAA TTGTTTCCTCTTGTGGGAAGTGGGAGATTTATCACTGCACCGGTGGTTACTGAAGATGGTCAACCAATTCAAGATCCATT GGTTCTATTAGAAAATAATCCAGACGGTGGAGCGATTGTACCTCCTCAAACTCCTCAAGATAATAATGGTATGGGACCTC CCAGCACTGACGCTGCAAATAAATTAGAGAAGATGACAGACAAAGGAGTAATCCAATGGATGTTAACTCTGCATCAAATA GGTTTGTGAATATTTTTTGGTTCTGAATTCATTGTAATATGTTTCTCCAATTGAATATTATTTACAAATTTTCAGCCATA TCAAATGTAAAAGTTTTAGAAGGAAGCTTCCTCATTTCTTTTCTCCATAATCCATTGATCAACTTATATCATAGCAGGAC AATAATCAAGTTAAATTTCTATGTTAGTGAACACTGATATAGAAAATTAATGCTTTTTGAATTGCAAATCCCCCTTCTGT CCCTAATCTGTTTTAAGTTTATATCCCTTTTAAGTAACCTTCCATTGTTAATTTCTTCCCTTCTATGTATCTTCTATAGT TTACTACATCTGCTTTAAGATATTAAGTGCTCTACATGATAGTTAGGAAACCTATCATTGAATAAATTTAAGAGAGTAAG TCCATGTTGCATAATTTCTAGTTACATGTCCATGTTTCAAATTATGCGCGGAATTCTTTTTGGTACAAATTAAATTTTAT TTTGGGTTCGAACTGTGTTGGCCTGCCTATGAAATGCGATAAGAACCTTCAAACACTAGTTTTCGAAAGTTTCCTCATGT AGAAAGTTAAAATCCTATTACCATAAAATAATTCTCAATGATCCTTTTTCTGGTACATACATATTTCAGGTCTTGACGTG ATTCGCACTGATAGGACACTAGTGTTTTATGAGAAGAAAGAGAACTTGTCAAAACTATGGGATATTCTTGCAGTTTATGC TCGGATAGATACAGATGTTGGCTATTGTCAAGGTCAGTCATTAGATATGTGATCCATTTGAATCTTATATGTTTTCCCTG TTTTGAACATTGACAAATACTATATTTAGAAGCTCCTATTGATTTCATTTCTGAGAGCTTATATGAATGTATAAGATAAT TCCATGCGGCCTCAATTCCAAAGGAAGGACAATATTCATACAGTATTTTATTATTAGATAACTTATGGCAGTTGTACCAT GTTTGGTTCTAGTACTGAGGGTTTTTGAAATAACCAAAGAGTTCCTTGATTTTTGTCAGGTTTTGATACATTTTTTAAAG TGGTCAATAAATACTTGATTATTAAGTCCTAGAAATAACTTTCATTGAGAACTAGAGACATAAGCCATTACCTATCCTCC ACCTAATGGCTTAAATTTGTAGGATTTAGTCTATGAGGTGGTTTCAGGAGACTCATTTACATATTGGTTTTTTCTTCTGA TTTACTTGCAATCTTGCAAGAAACTAAATCTGGCCATCATTTTCAACTAATGCAAGCTTCTCGCTATCATTATACATTTG GCAGGAATGAGTGACTTATGTTCTCCCATGATAATTCTTCTGAATGATGAAGCTGACGCGTTTTGGTGCTTTGAGCGTCT GATGCGTAGACTGGTAAACTTTATCTGTATGATTTATTTTACATTTGGCAATCTTGTTTAGTATGCTTTTTTTCTTGAAA ACTATCAAAGCAAAAAAAAAACTATTATTGATCTTTCCTTCATTGTTTTATTGTTTGCAAATATACAATTAGAAGAAATT ATGTAATGTATTTGAATATTTAACAATGACAGCTGAAAATAAATTTTTGTTTAAAGAGATACAATTTTTTACTGCATTTG AAATTTATCTTCATTTCTTATGATCTATATTGTTTTATTTCTTAAAGCGAGGAAATTTCAGATGCACTGATAGTTCTGTT GGGGTGGAGGCTCAACTGAGTAATTTAGCTTCAATTACTCAAGTAATTGATCCAAAACTTCATCAACATTTAGGTATTCC CTTGCATTCATTCTTCTGGATTTTTATTTATGGTCAAGCAAGTTATAGAATTTTATTACTAAGTTTGCAGTTTTTGTGTA CTTGTTTTGAGAAACAATGATGAGATAAACATTAAGGGAAAGATTCTTACTCCTTGGTATCCACTATATCAATATATTTA AGTCAATTGGTGATTTATCATTTCATCTGTCATTATGATCATTTTTAAGCTGTCATTTCGAAGGTGTTGAATACTTTACT CCATGTAATAATAGGACTTTTTGTAATATTTTACTGCTAATTTTCACAAATTGATGCTTGAGAAATGGAAAATAACAATG AATTGTCTTTCAATGTTGGATCACAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTCTGT TTCGTCGAGAATTCTCCTTTTGCGATTCATTGTACCTTTGGGAGGTTTGAATAACTTTCTTTTTCCACTGATTTGTTCTA TCTCATTTCTTCACTTTTTGCTTATAAAAAATGTTCCTCCAAAATGCATTTATAATTTCCAATTTTCATTATGTCACTAC TCATGTTATGCTATTAGTGTTTATACTATTTTCTATTAGAAATTGTTTGGAGTCCATATCTATCATGGTTGGACTATAGT ATAAACCAATAATTCCTACAAAACCACTGCAAATATAATTTACAATCCTTGAAATATTTATCAGATGATGATTGTAATAA GTAACTACTTCAAAACAGTTTATGGTGATTGTAACAACTAGCTGAAATAATTGACAGATGATGTGGGCTCTAGAGTATGA TCCTGACATGTTCTGGTTGTACGAAGATGCTGAAGAAACTTCTGATAAGTCTGAGGAAGCGAAAGCGAGATTAAAGTCAA TACGCCATTACGGAAAGTATGAGAGAGAAAATATGAAAAATGCATCAAAGAGTTCTGAAGAACCTCCTCTTCCCATATCT GTTTTCCTTGTTGCTAGTGTGTTGAAAGAGAAAAGCGCAACACTACTCCAGCAAGCACGAGGCTTGGATGACGTTGTCAA GGTTTGTAGTGTGAATTTTGCACTAAATTAGAATGAACAATTACATTGATCTAAATGATAAAATTAAAAGAAAAGATTGT TTTTTTCGTTTGACGAACAATCTAGTACTTTATTTTTTCATATCTCTTAACTTCATCCTCTGGCTGACTGATTTAATTCT TCTCAGATATTGAATGATGTAAATGGAAATCTAGATGCCAAAAAAGCCTGCGTTGCGGCACTGAAACTTCACAAGAAATA TTTGAAGAAGGTACTGCCATTCTTTCTTCTGCTTTTCATATCTTCATGTTTCTATATAATTGGAGGAAGGTCAAAGTAAG TGATTGATCATAATGATTGATCCCTAAAGATATGATAGAACACTAAAGTAATAAAGTTATCTTGCTAGAGATATACCCCG TATTCTAAAACTACTACTACTACTACTCTTACCATCCTTGCCTGCTATTTTTTATGACTCATTGTGTGCAGCACTAAGCA AAAGAATAACTGTGACTGGAATATCTTTTTTCCATAAGCACTTATCGCATAAGCTCTTATTTATAAGCTAATTAATTTGA TAAGCTTAATGAAATGAGCTTGAAATAGCTTATAGATAGGTATAAGTGTTTATTCGTATGCTAATCTATGCAGAAAAAAA AAAGCTCAAAACAGATAGGTCATAGGCTATTTTCATAAAGTTCACTCTAACACTGGCATAAACACATATGCTATGGGATA AGCTCAACTAAGTTATTCCATACGCAACATATGTGCATTAGGCTCTCTTTAGTTATTGAAGAAATATGTATGCTATATGA TTGTGTCATATGACATATTCCACTATTATGTCTATAAAATGTTTATCATGTCTGTATATTACTTCTTTCTTAGTTTCATA TCTCTTTTCTTATTTCCTTTATAAGTTTGTTTATCATCCTCTCATTATATATGGAATTTGCATTTGCTGCAGGCCAAGAA ACCCTAGCACCAAACCCTGCTGCAGACATTTGATTTTTTGTTGATCATATATCACTTCCTGCATGGTGCCATTTATTTGG GAGACCATATTGGATGTCCTTAATAACTTTGGATTAAATTCTATAAAATTGAAAAAGGGTTCTAACCATAAAGTCTTAGC TGAAAAACAATTGTTGTATATGAAATTAATTTGATTTTTTTGTATATCTAAAAATAACAAAGGTTGTGCATGAATTTAGT CTGTTCAACCATGTACTCATACTTTGTAATCTATGTGACATGGGAAAAGAGGGATACAAGAGAAAAACAAAAAGTGATAC AAGATATAATCATCCCTGTTGACAAAATTAATGTTGGCCTTCATCTCTTG
CDS sequence (LotjaGi3g1v0149400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGAGATCCAGGAGCTCCGGCAGATTCTTTCTATGAAATCCGCCCTGAGTGCACAGATGTTCCCAAGTCAAGATT TAGGATAAAGGCTGGTAAAACTCTAAGTGCAAGAAAGTGGCATGCTGCATTTTCTCCCGAAGGGTATTTGGATATAGGCA AGACTCTAAGCCGAATCCACCGTGGGGGAATTCACCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTCGGTTGCTAT GATCCAAAGAGTACATTTGAGGAAAGAGATGAGATAAGGCAGCGCCGAAGGACGCAATATGCTGAATGGAAGGAAGAATG CCGCCAATTGTTTCCTCTTGTGGGAAGTGGGAGATTTATCACTGCACCGGTGGTTACTGAAGATGGTCAACCAATTCAAG ATCCATTGGTTCTATTAGAAAATAATCCAGACGGTGGAGCGATTGTACCTCCTCAAACTCCTCAAGATAATAATGGTATG GGACCTCCCAGCACTGACGCTGCAAATAAATTAGAGAAGATGACAGACAAAGGAGTAATCCAATGGATGTTAACTCTGCA TCAAATAGGTCTTGACGTGATTCGCACTGATAGGACACTAGTGTTTTATGAGAAGAAAGAGAACTTGTCAAAACTATGGG ATATTCTTGCAGTTTATGCTCGGATAGATACAGATGTTGGCTATTGTCAAGGAATGAGTGACTTATGTTCTCCCATGATA ATTCTTCTGAATGATGAAGCTGACGCGTTTTGGTGCTTTGAGCGTCTGATGCGTAGACTGCGAGGAAATTTCAGATGCAC TGATAGTTCTGTTGGGGTGGAGGCTCAACTGAGTAATTTAGCTTCAATTACTCAAGTAATTGATCCAAAACTTCATCAAC ATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTCTGTTTCGTCGAGAATTCTCCTTT TGCGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAGTATGATCCTGACATGTTCTGGTTGTACGAAGATGCTGA AGAAACTTCTGATAAGTCTGAGGAAGCGAAAGCGAGATTAAAGTCAATACGCCATTACGGAAAGTATGAGAGAGAAAATA TGAAAAATGCATCAAAGAGTTCTGAAGAACCTCCTCTTCCCATATCTGTTTTCCTTGTTGCTAGTGTGTTGAAAGAGAAA AGCGCAACACTACTCCAGCAAGCACGAGGCTTGGATGACGTTGTCAAGATATTGAATGATGTAAATGGAAATCTAGATGC CAAAAAAGCCTGCGTTGCGGCACTGAAACTTCACAAGAAATATTTGAAGAAGGCCAAGAAACCCTAG
Protein sequence (LotjaGi3g1v0149400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRDPGAPADSFYEIRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCY DPKSTFEERDEIRQRRRTQYAEWKEECRQLFPLVGSGRFITAPVVTEDGQPIQDPLVLLENNPDGGAIVPPQTPQDNNGM GPPSTDAANKLEKMTDKGVIQWMLTLHQIGLDVIRTDRTLVFYEKKENLSKLWDILAVYARIDTDVGYCQGMSDLCSPMI ILLNDEADAFWCFERLMRRLRGNFRCTDSSVGVEAQLSNLASITQVIDPKLHQHLEHLGGGDYLFAFRMLMVLFRREFSF CDSLYLWEMMWALEYDPDMFWLYEDAEETSDKSEEAKARLKSIRHYGKYERENMKNASKSSEEPPLPISVFLVASVLKEK SATLLQQARGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKAKKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 446 | 445 | 3.3E-225 | – | |
PANTHER | 2 | 446 | 445 | 3.3E-225 | – | |
SUPERFAMILY | 39 | 294 | 256 | 8.89E-51 | ||
SMART | 60 | 354 | 295 | 1.9E-32 | ||
ProSiteProfiles | 63 | 334 | 272 | 35.878 | ||
Gene3D | 161 | 258 | 98 | 2.4E-16 | – | |
Pfam | 180 | 331 | 152 | 2.8E-35 | ||
SUPERFAMILY | 272 | 441 | 170 | 1.02E-28 | ||
Coils | 343 | 363 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0149400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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