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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0149400 |
| Transcript ID | LotjaGi3g1v0149400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|P48365|GYP7_YEAST GTPase-activating protein GYP7; TrEMBL-Plants: tr|A0A151SKJ0|A0A151SKJ0_CAJCA GTPase-activating protein GYP7; Found in the gene: LotjaGi3g1v0149400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20139512..20145003) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGAGAGATCCAGGAGCTCCGGCAGATTCTTTCTATGAAATCCGCCCTGAGTGCACAGATGTTCCCAAGTCAAGATT TAGGATAAAGGTTTGTTTTTCATGCATGCATGCATTATTGGGTTGATAGAAATTATGGTCTTTGATTTAGGATTTATGAA TGCATTTGTTCATTCAGAAAGTTTGAGTTTGTGAAGTTAATTAACTGCAACAAGTTTTTGTACATTTGGGATATTATTAA TTTGTCATTGCTTATGATTATATCTTGAAACTTACACATGGATATTTTAGATGGATTGACTTGTAAAAAGATGATATGAT GGTGTTTTATCAAAAATGAAAAGATTATGATTGTTGCCTTTAGGTTAGTTTCATAAGGATCTTGGGTTTGAAATGAATTT TGAATTAACTAATGTCATTGAGTATCATGTTTGATCAATTGGAGCCCATTGCATATACGGGGAATCCACTATTCAGAAGA TACCTAGGGATGGGTAGCTCACATGGTTGAGCTAAGGGTAATTGTAGGTGAAGGGTCAGGGTTCGAACACTGAGGAGGGA TAATTTGTACTAATTTACTAACAACTAACATTTGCCTATAGAAAAAACTATTCAGAAGATACCTTATCAAACATCTAAAA ATTTCATAAAATCTATGATATTGTCACGAATGAAGGGTGCTTAATTGAATTAAATCATCAATGAAACTTAATATAAAGTA AAATAAGAAATGTGTTGAGATTAACAAACTATTACAAGATTAAAGGATGCAATGTATCAGCTGGTTATTAATGGATTGAT TGCTTTGTTGGATAAGTTCATCACTTATCAAAGAAGGAAATTTGAGTACAAATAAAATTGCACTTAGTGATTTATGATGG TACAAGATAAATATCTAATTCCTAATTACTCTTGTTCGGTTTTCATCTCATGAAAAAGTAAAATCTATATTGCATACTTT AATTGGATAGTCTGCACCTTAATTCAGTATTCATATGCCTTCAGCTGAGAACTTGCAGATTTACTTAACTTTTGATCTTT TAACACTAATGTAGTGTTCTTTAAATTTGAACTTCTTTTTGTTATGTGCTCCAGGCTGGTAAAACTCTAAGTGCAAGAAA GTGGCATGCTGCATTTTCTCCCGAAGGGTATTTGGATATAGGCAAGACTCTAAGCCGAATCCACCGTGGGGTAATTGCAA TTTTACAATTAAAATGGTGCTTTAATATGTTCAATGATACTAACAAAGTTTATTTACTCTCATAATTCAGTTTAAATGGC ATTTCGGTGCATTAGGAAACTTGACATTTTCAGTAAAACTTGAGTTTCTAGTTCTGTCTGGTAATAAAATATGAGCTTGA TTAATGCTTGAAAATTTGGAACTTAACTGACAACTTTTTGTTCCATAATGAACATGAACTCCTATTACCATGGTTGACAT AAAAATGCATATAGATTTTTTTTCATAAGACTATCCAAGGTTTTCAGTGCCTGAGCTGAAAAGGTAGCTTGCTATAATCA AGTTGTCTCACTCTATTGAATATTTTCAAACCAGGGAATTCACCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTCG GTTGCTATGATCCAAAGAGTACATTTGAGGAAAGAGATGAGATAAGGCAGCGCCGAAGGTAATCATATTTTCCTTTTCAT AATCCCCTCATTACCATCAGATTTTACATCCTAGAGCGTTTAGAATTCACTGCAATATATGAGGCTTGTGTCTTCCTTTA AAATATAAATGGAATGGCTATATAATGTTACTACATACTTGATATGCTATGAAATTTATAGATGAATAAAATTTATGTTT GTTGTATTTAGAATTCTAAATGTAATAGGTTACTAGTTGCATAACATTTCATGTATATATAGGACGCAATATGCTGAATG GAAGGAAGAATGCCGCCAATTGTTTCCTCTTGTGGGAAGTGGGAGATTTATCACTGCACCGGTGGTTACTGAAGATGGTC AACCAATTCAAGATCCATTGGTTCTATTAGAAAATAATCCAGACGGTGGAGCGATTGTACCTCCTCAAACTCCTCAAGAT AATAATGGTATGGGACCTCCCAGCACTGACGCTGCAAATAAATTAGAGAAGATGACAGACAAAGGAGTAATCCAATGGAT GTTAACTCTGCATCAAATAGGTTTGTGAATATTTTTTGGTTCTGAATTCATTGTAATATGTTTCTCCAATTGAATATTAT TTACAAATTTTCAGCCATATCAAATGTAAAAGTTTTAGAAGGAAGCTTCCTCATTTCTTTTCTCCATAATCCATTGATCA ACTTATATCATAGCAGGACAATAATCAAGTTAAATTTCTATGTTAGTGAACACTGATATAGAAAATTAATGCTTTTTGAA TTGCAAATCCCCCTTCTGTCCCTAATCTGTTTTAAGTTTATATCCCTTTTAAGTAACCTTCCATTGTTAATTTCTTCCCT TCTATGTATCTTCTATAGTTTACTACATCTGCTTTAAGATATTAAGTGCTCTACATGATAGTTAGGAAACCTATCATTGA ATAAATTTAAGAGAGTAAGTCCATGTTGCATAATTTCTAGTTACATGTCCATGTTTCAAATTATGCGCGGAATTCTTTTT GGTACAAATTAAATTTTATTTTGGGTTCGAACTGTGTTGGCCTGCCTATGAAATGCGATAAGAACCTTCAAACACTAGTT TTCGAAAGTTTCCTCATGTAGAAAGTTAAAATCCTATTACCATAAAATAATTCTCAATGATCCTTTTTCTGGTACATACA TATTTCAGGTCTTGACGTGATTCGCACTGATAGGACACTAGTGTTTTATGAGAAGAAAGAGAACTTGTCAAAACTATGGG ATATTCTTGCAGTTTATGCTCGGATAGATACAGATGTTGGCTATTGTCAAGGTCAGTCATTAGATATGTGATCCATTTGA ATCTTATATGTTTTCCCTGTTTTGAACATTGACAAATACTATATTTAGAAGCTCCTATTGATTTCATTTCTGAGAGCTTA TATGAATGTATAAGATAATTCCATGCGGCCTCAATTCCAAAGGAAGGACAATATTCATACAGTATTTTATTATTAGATAA CTTATGGCAGTTGTACCATGTTTGGTTCTAGTACTGAGGGTTTTTGAAATAACCAAAGAGTTCCTTGATTTTTGTCAGGT TTTGATACATTTTTTAAAGTGGTCAATAAATACTTGATTATTAAGTCCTAGAAATAACTTTCATTGAGAACTAGAGACAT AAGCCATTACCTATCCTCCACCTAATGGCTTAAATTTGTAGGATTTAGTCTATGAGGTGGTTTCAGGAGACTCATTTACA TATTGGTTTTTTCTTCTGATTTACTTGCAATCTTGCAAGAAACTAAATCTGGCCATCATTTTCAACTAATGCAAGCTTCT CGCTATCATTATACATTTGGCAGGAATGAGTGACTTATGTTCTCCCATGATAATTCTTCTGAATGATGAAGCTGACGCGT TTTGGTGCTTTGAGCGTCTGATGCGTAGACTGGTAAACTTTATCTGTATGATTTATTTTACATTTGGCAATCTTGTTTAG TATGCTTTTTTTCTTGAAAACTATCAAAGCAAAAAAAAAACTATTATTGATCTTTCCTTCATTGTTTTATTGTTTGCAAA TATACAATTAGAAGAAATTATGTAATGTATTTGAATATTTAACAATGACAGCTGAAAATAAATTTTTGTTTAAAGAGATA CAATTTTTTACTGCATTTGAAATTTATCTTCATTTCTTATGATCTATATTGTTTTATTTCTTAAAGCGAGGAAATTTCAG ATGCACTGATAGTTCTGTTGGGGTGGAGGCTCAACTGAGTAATTTAGCTTCAATTACTCAAGTAATTGATCCAAAACTTC ATCAACATTTAGGTATTCCCTTGCATTCATTCTTCTGGATTTTTATTTATGGTCAAGCAAGTTATAGAATTTTATTACTA AGTTTGCAGTTTTTGTGTACTTGTTTTGAGAAACAATGATGAGATAAACATTAAGGGAAAGATTCTTACTCCTTGGTATC CACTATATCAATATATTTAAGTCAATTGGTGATTTATCATTTCATCTGTCATTATGATCATTTTTAAGCTGTCATTTCGA AGGTGTTGAATACTTTACTCCATGTAATAATAGGACTTTTTGTAATATTTTACTGCTAATTTTCACAAATTGATGCTTGA GAAATGGAAAATAACAATGAATTGTCTTTCAATGTTGGATCACAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTT CGAATGCTAATGGTTCTGTTTCGTCGAGAATTCTCCTTTTGCGATTCATTGTACCTTTGGGAGGTTTGAATAACTTTCTT TTTCCACTGATTTGTTCTATCTCATTTCTTCACTTTTTGCTTATAAAAAATGTTCCTCCAAAATGCATTTATAATTTCCA ATTTTCATTATGTCACTACTCATGTTATGCTATTAGTGTTTATACTATTTTCTATTAGAAATTGTTTGGAGTCCATATCT ATCATGGTTGGACTATAGTATAAACCAATAATTCCTACAAAACCACTGCAAATATAATTTACAATCCTTGAAATATTTAT CAGATGATGATTGTAATAAGTAACTACTTCAAAACAGTTTATGGTGATTGTAACAACTAGCTGAAATAATTGACAGATGA TGTGGGCTCTAGAGTATGATCCTGACATGTTCTGGTTGTACGAAGATGCTGAAGAAACTTCTGATAAGTCTGAGGAAGCG AAAGCGAGATTAAAGTCAATACGCCATTACGGAAAGTATGAGAGAGAAAATATGAAAAATGCATCAAAGAGTTCTGAAGA ACCTCCTCTTCCCATATCTGTTTTCCTTGTTGCTAGTGTGTTGAAAGAGAAAAGCGCAACACTACTCCAGCAAGCACGAG GCTTGGATGACGTTGTCAAGGTTTGTAGTGTGAATTTTGCACTAAATTAGAATGAACAATTACATTGATCTAAATGATAA AATTAAAAGAAAAGATTGTTTTTTTCGTTTGACGAACAATCTAGTACTTTATTTTTTCATATCTCTTAACTTCATCCTCT GGCTGACTGATTTAATTCTTCTCAGATATTGAATGATGTAAATGGAAATCTAGATGCCAAAAAAGCCTGCGTTGCGGCAC TGAAACTTCACAAGAAATATTTGAAGAAGGTACTGCCATTCTTTCTTCTGCTTTTCATATCTTCATGTTTCTATATAATT GGAGGAAGGTCAAAGTAAGTGATTGATCATAATGATTGATCCCTAAAGATATGATAGAACACTAAAGTAATAAAGTTATC TTGCTAGAGATATACCCCGTATTCTAAAACTACTACTACTACTACTCTTACCATCCTTGCCTGCTATTTTTTATGACTCA TTGTGTGCAGCACTAAGCAAAAGAATAACTGTGACTGGAATATCTTTTTTCC
CDS sequence (LotjaGi3g1v0149400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGAGATCCAGGAGCTCCGGCAGATTCTTTCTATGAAATCCGCCCTGAGTGCACAGATGTTCCCAAGTCAAGATT TAGGATAAAGGCTGGTAAAACTCTAAGTGCAAGAAAGTGGCATGCTGCATTTTCTCCCGAAGGGTATTTGGATATAGGCA AGACTCTAAGCCGAATCCACCGTGGGGGAATTCACCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTCGGTTGCTAT GATCCAAAGAGTACATTTGAGGAAAGAGATGAGATAAGGCAGCGCCGAAGGACGCAATATGCTGAATGGAAGGAAGAATG CCGCCAATTGTTTCCTCTTGTGGGAAGTGGGAGATTTATCACTGCACCGGTGGTTACTGAAGATGGTCAACCAATTCAAG ATCCATTGGTTCTATTAGAAAATAATCCAGACGGTGGAGCGATTGTACCTCCTCAAACTCCTCAAGATAATAATGGTATG GGACCTCCCAGCACTGACGCTGCAAATAAATTAGAGAAGATGACAGACAAAGGAGTAATCCAATGGATGTTAACTCTGCA TCAAATAGGTCTTGACGTGATTCGCACTGATAGGACACTAGTGTTTTATGAGAAGAAAGAGAACTTGTCAAAACTATGGG ATATTCTTGCAGTTTATGCTCGGATAGATACAGATGTTGGCTATTGTCAAGGAATGAGTGACTTATGTTCTCCCATGATA ATTCTTCTGAATGATGAAGCTGACGCGTTTTGGTGCTTTGAGCGTCTGATGCGTAGACTGCGAGGAAATTTCAGATGCAC TGATAGTTCTGTTGGGGTGGAGGCTCAACTGAGTAATTTAGCTTCAATTACTCAAGTAATTGATCCAAAACTTCATCAAC ATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTCTGTTTCGTCGAGAATTCTCCTTT TGCGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAGTATGATCCTGACATGTTCTGGTTGTACGAAGATGCTGA AGAAACTTCTGATAAGTCTGAGGAAGCGAAAGCGAGATTAAAGTCAATACGCCATTACGGAAAGTATGAGAGAGAAAATA TGAAAAATGCATCAAAGAGTTCTGAAGAACCTCCTCTTCCCATATCTGTTTTCCTTGTTGCTAGTGTGTTGAAAGAGAAA AGCGCAACACTACTCCAGCAAGCACGAGGCTTGGATGACGTTGTCAAGATATTGAATGATGTAAATGGAAATCTAGATGC CAAAAAAGCCTGCGTTGCGGCACTGAAACTTCACAAGAAATATTTGAAGAAGCACTAA
Protein sequence (LotjaGi3g1v0149400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRDPGAPADSFYEIRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCY DPKSTFEERDEIRQRRRTQYAEWKEECRQLFPLVGSGRFITAPVVTEDGQPIQDPLVLLENNPDGGAIVPPQTPQDNNGM GPPSTDAANKLEKMTDKGVIQWMLTLHQIGLDVIRTDRTLVFYEKKENLSKLWDILAVYARIDTDVGYCQGMSDLCSPMI ILLNDEADAFWCFERLMRRLRGNFRCTDSSVGVEAQLSNLASITQVIDPKLHQHLEHLGGGDYLFAFRMLMVLFRREFSF CDSLYLWEMMWALEYDPDMFWLYEDAEETSDKSEEAKARLKSIRHYGKYERENMKNASKSSEEPPLPISVFLVASVLKEK SATLLQQARGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 444 | 443 | 8.0E-225 | – | |
| PANTHER | 2 | 444 | 443 | 8.0E-225 | – | |
| SUPERFAMILY | 39 | 294 | 256 | 8.63E-51 | ||
| SMART | 60 | 354 | 295 | 1.9E-32 | ||
| ProSiteProfiles | 63 | 334 | 272 | 35.878 | ||
| Gene3D | 161 | 258 | 98 | 2.3E-16 | – | |
| Pfam | 180 | 331 | 152 | 2.7E-35 | ||
| SUPERFAMILY | 272 | 441 | 170 | 1.02E-28 | ||
| Coils | 343 | 363 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0149400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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