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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0150100 |
| Transcript ID | LotjaGi3g1v0150100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B; TrEMBL-Plants: tr|I1JXB2|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20193023..20193865) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGTCTTGACAGATCATATCTCAAAGGAGATGAATGAGTTGAACTTGATTCGGTGTCAGAAAATACCGAAGAGACC AGGTGCTGATTGGCGTGACCTTCCAGATGAGAAGGTAAAATTAAATTTGAATAAAACTTTAGCATAACCGTTTTGTGATT TATCTAACTTGTGATATCTTATAAAATGCAGATAAAGTTGTCTACTGGACAAGTTGTTGATTTGATACCATGGTGCTTGC CAAACACAGCTAAGAGACACAATCACTGGAAGGGATTGTTTGGTAGGTTGGATTGGCAAGGTAACTTCCCAACTTCCATC ACAGATCCTCAACCAATGGGGAAAGTTGGAATGTGCTTCCATCCTGATCAGGATAGGATTCTTACTGTTCGTGAATGTGC ACGCTCTCAAGTAAGTTGTTACCATAAATGCTATGATAAAATGGAATCCTGACATACTGTGATTTGATTTGTCATGACTG AATTTTTATGGAGAATACTGAACATGTTATCCAAGTATTAGTTCATAGTTTCGTTTGTGTTGTCCAAAACATTAGATTGC ATAATTGGTTGGTGGGTGTAATAGTCCTTAATTACTTAGCAATGGTCCCAACTCCCAACCCCCCAAAATCTCTGCCTAAG AAATTGGAAGATGTCATCTGATTTGGTATGATCTCTTGTCTTATCTTTTTTATCTATAAATGCAGGGCTTCCCAGACAAC TACCAATTTTCTGGCAACATTATACACAAGCACAGGCAGATTGGTAATGCTGTTCCTCCTCCTCTAGCATTTGCTTTAGG GAGAAAGCTCAAGGAAGCAGTGGATAGTAAGGGCTCCACTTAG
CDS sequence (LotjaGi3g1v0150100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTCTTGACAGATCATATCTCAAAGGAGATGAATGAGTTGAACTTGATTCGGTGTCAGAAAATACCGAAGAGACC AGGTGCTGATTGGCGTGACCTTCCAGATGAGAAGATAAAGTTGTCTACTGGACAAGTTGTTGATTTGATACCATGGTGCT TGCCAAACACAGCTAAGAGACACAATCACTGGAAGGGATTGTTTGGTAGGTTGGATTGGCAAGGTAACTTCCCAACTTCC ATCACAGATCCTCAACCAATGGGGAAAGTTGGAATGTGCTTCCATCCTGATCAGGATAGGATTCTTACTGTTCGTGAATG TGCACGCTCTCAAGGCTTCCCAGACAACTACCAATTTTCTGGCAACATTATACACAAGCACAGGCAGATTGGTAATGCTG TTCCTCCTCCTCTAGCATTTGCTTTAGGGAGAAAGCTCAAGGAAGCAGTGGATAGTAAGGGCTCCACTTAG
Protein sequence (LotjaGi3g1v0150100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVLTDHISKEMNELNLIRCQKIPKRPGADWRDLPDEKIKLSTGQVVDLIPWCLPNTAKRHNHWKGLFGRLDWQGNFPTS ITDPQPMGKVGMCFHPDQDRILTVRECARSQGFPDNYQFSGNIIHKHRQIGNAVPPPLAFALGRKLKEAVDSKGST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 46 | 46 | 3.7E-15 | – | |
| PANTHER | 2 | 153 | 152 | 8.7E-103 | – | |
| PANTHER | 2 | 153 | 152 | 8.7E-103 | – | |
| SUPERFAMILY | 4 | 148 | 145 | 4.76E-28 | ||
| Gene3D | 47 | 114 | 68 | 1.7E-52 | – | |
| Pfam | 69 | 147 | 79 | 7.7E-17 | ||
| Gene3D | 115 | 148 | 34 | 1.7E-52 | – | |
| ProSitePatterns | 128 | 146 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi3g1v0150100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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