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LotjaGi3g1v0151000.1

Overview

Field Value
Gene ID LotjaGi3g1v0151000
Transcript ID LotjaGi3g1v0151000.1
Lotus japonicus genome version Gifu v1.2
Description BHLH transcription factor; TAIR: AT5G54680.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH37|ILR3_ARATH Transcription factor ILR3; TrEMBL-Plants: tr|I3T8I3|I3T8I3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0151000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:20315669..20321112) extracted from Lotus japonicus Gifu genome v1.2.

GGAGCCTTTGCCTTTGATTTAAGATAGATCAACCCATACTAGTATTATTTAATAATAATAAAGAAAAGCCATCTTTTCAC CCTTCCTCTTGTTGTCTTCAACTCCCAATCGTGCAAGCAAGCAAACCCTCTCATCTCAAATAATCCCTGTTTGTTTCCCA GGAAAATAACAATAACAAACAACAGATAAAGTAAAAGCGTTTTTCTCTCCCGAGAAAATTCTCCGGGAACCGACGCCGCA GAATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGTTTGATCGACGATATTCCCGCCCCTGAGGTCACCTTC ACTGTCCCTCCCTCCGGATTCACCTGGCCCTCCTCTCAACCCTTGAATTCCTCTTCCAATGTCGTCGGGTACTCGCAGAT CCTTTCATTCAATTCACGCTTTTCTCTCCAATTTTGCCCCCTTTTTCACTCCTCTGTAATTAGGGGTTTTTCATGTGAAT TTTGTTAATTTTCAACTTTTAGGATTTGATGTTTTGTTTATTAGTTTAGTTTTAGGAATGAATTATTTGTTTTTTTTTTA TTTTATTTATCCATAAAATTCATGGGTTTCTGAATTTTTTCAGTTTGGTCAACTTGGGGATATGAATGTGAAGTAGAACT TGTGGTTAGGATAAGTTTAGATGCTTCAGAATATTCTTAGGCTTGCAAGGTTAATTGCTGTTGCAGTTTTCACTTTCATT GTCTAATGGTCATTGAAAGCTTAGTTTTATACTTGCTTCTGCACTTGTGATAGGGAAAAGAGTAATAGGATGGGGAAAAT ATGGAAGGTGTGCACTAAATCTTCGCAGCAGTTAACGTATTACTCTGTCGCACTAAAGTAGTAGAAGTGAATGTTGGGGA TAACAAAAGGGCCAACGAGCGCAAGAAATGAATGTAGCGTAGATGAGAAATGTGTAATAGATTATTGGACAATTGCAATA CTATAAGGAAACATATTTGAGAGGGAGATGGACTGGAGGAGCAGCACTTATTGAAGAGAAGATGAGAAAACTCACCTTCA GTTGAGAAGCTGACAGATAACTTTCCAGTGAATAAAGGGGATAAAAAAGAGGATATTCTGATTAAGAGGAAGAGGAAGAC GTAGAAAGCTTTATAGGATAAACCACGTAGAAAATCCTTTTTTTTTTGAAATGGAGTTAAAACTTCATTTCTGCTATAGA TGAATGGATTGGTTGATCTACATAACCAACACCGAGTCATACTGAGATAGGTCTGGGTTGTTTTATTCCCACTACCGAGA GGGCCGTTTTCCACAAATTGTAGGTTTGGATATGAGAATTGGAAATATTTATACCAGACTCTTGTATATTGAACCCTGTT TTTGATCCATGCCATCTGAATTTTCAAGTCGGGTAAAATGTGCATTATATGGTTGAATTAGGATTTAGGATCTTCAGGAA CAGTGACTAGACTGCTATCTGAAATATTTCTGAAGGTGTTTGACTTTAACCTGTCATGGAAGATTTATGATCATAGAATG AATTGTTTGTCCCAGTTATGGACCCCAATATTTTTAATAGTGGTTTGAGAAATGTTAGTGCCATCAATATTTTGATGATC TACGTTGCAATCTAGATAGCATTGCTACTAATTATACTGTTATATCTATAGCACAATTTGCATGATGGTACCCCTTTCCC TCATAAAAAAAAATTGTTGTCTCACTTGTTTTTTCATTTTTGCTTTACTATCTGCTCCTAGTGTTGAGATTGATGGCTCA TTAGGGGATTCTGACAGTCTCAAAGAGCCTGGTTCGAAGAAGAGGTACGCACTTTTCTATCCCCCTTTCTTTTTAACTGG ACAAAATCACAAAATTGTTTCATATTAATAAAAGGAAAGAATAAAGAATCAACTTGTCTAACCACCTAGAAATCTTATAC TGTAACTAAAGCTCTTTGTTCACTTTGTTTCCAAATCAATTTTGTTTTACTTGTGTGGTTTTTTCTTACTATTTCAATTT TAGTTGACTTATTGCTTTATTTCATTTTCTTTCTTTCAATTCAAAGAAAAAGTTAAAACATTTCACTTTTCTCAAACTCA ATTCTATTAATAGAAGAGTTGATTTTTAAAAAGTAAAAAATAAAAAGATGCCAAACATTGTAGTCACTATACAAACCATG AGTTTGTTGACACAATCGAGATTTCTGAAGAAATAGGCACTTAGTTTCTCTGCTATTGCTGATTAGTGCAATTGATGTTA ATAAAAAAATGAACATGAAAAATATATATAAATGGCTCTTTTATATATATATATATATATATATATATATATATATATAT ATGGAGCATATCAGGTGAGAGGAGTGGTTTATGGTGAGAGATGAGAGGAATAATTAATGACCCTTGGATCAAAATAAAGA GTTCAGATTAAATCCCACTTTTAATCTCTCACGTGACCATCTCTTTCTCTTCAATTCATTCTTTTCGCACAGACGCACAC CATCGTTTCTCTCCGTCTTCCTCCCCGTCTCCCTGTCTTCCAATCCTTCATCAGATCCAAGTCTGTTCTTCCCTTTCCCT CTATTGCTGACGTCTCCTGCTTCCTCCTGCATATGCCCTTTTGATAATTGTTTTACTCAATAATCAATTTCTTCGTTATC AATTATACTTGGTAAATACAATGAACTAAAACCAATTTCCTCAAGAATTAAGTAGTTAATTTTAACCAGAATTAAAACTC CAATTTGATAGCTCCAATTTCTCTTTTTAACTTTGCCCCTCATAAGTCCCTTAGTTTTTAGGCTTATCACCACACCATGC CTATCGCCATCGATTAGCCGGAGACGATAGTCCTCTCGTCTATTTTCTTCCAAAATTTTCTGCGTGCAACACCAGATTGA ACATAAATTCACGGCGGCCCTACATTAGAAACGCCCCAATCACCATTTTGCATGCCACACCTCCGCCAGATCTCCATGAC TGCGGCCTAGTTCCACCATTAATGATGACAGACGCATGTTAGAAATTAGGGTATGATAATCATGGATAACTTCGAAGAAT CGTGTTGAACACTTTCCGAACAAAGTATTTCGACCCTATTCTTGCCTGGGTTCACGAAATCCTTGTTGGGATAATTCTGA AGATCAATCTGCTTCAGGCAAATGAAGAACAGATCAAGAATGTAGAGCGTAATTTTGGTTTCTGTTTTCTGTATATAAAC TGAGGGCCAAATAACTCCTTTATAAGGAATTTGTTTCAGAAATTTGAAAAACGGTTAATAAAACCGAATTTCTTTTCAAA AAATTTCGAAATTCGGTCAATTATGCGTTGGCTCAACAAGCGTGCGCTCCGCACTACCCTAACTCGTTTCCGAGCTTAAC GCATAATTGCATCGGCCTTCAATAAATCACATTACTACTAAAATCCATTGATGATACTAAAATCACCAACAACGCACAAC CTTGCGCTCACGCGAAGGGACAGAATACTAGAAAGGATAGAAGATGTGTGGGCGGTTGGTCCACCGGAACGCTGCGACGG TGGAGTGGGCAGAAACGTTGTCGTCGTCGTCGCCGAGGATGGAAGGAGATGCTGCCCGACTGCGAGATGATTGAACCAGA GAAGAAGCGTTAGAGAAGATGCAGAGTGCGAGAGGGAGGAGAAACAGAGGGAATAGGTCACGTGAGTTGTTAAAATAGAA GTTTAATCTCAACCGTATATTTTAATCCAAGGGCTATTAATTATTCCTCTCATCTCTCACCATAAACCACTCCTCTCACC TGATATGCTCCCTATATATATATATATACATCACACACACATATATATATATATAAATCTTGCTCAATTATAACTTTATT TTTTCTATTAAATTTTTAGGCTCATTTTCTAGCATCATCTTTTCTTGTCTTGTAGTATTGGCTGCTCTTTTGAATACTTT TAAACCCGCATGACTTATTCCAGTTCAGATAGCTTATCCTTAGGGGAAGTCATCCTCATTCTCTTGTTCATTTCCATTTG CAGGGTCAGATCTGAGTCATGTTCTGCTACTAGCTCCAAAGCATGCCGGGAGAAGTTGCGTCGAGACAAACTTAATGACA AGTAAACTTTTGCGTCCAACTACCTTCCCTCTGTTTTTCTATGTTACTGGTGGGTTTTTGTGTAAATATTTTGCTTTGGC ATTTACCTTGTATGTGTTGGACATGGTTAGGTTTGTTGAACTGGGCTCCATATTGGAGCCTGGAAGACCTCCCAAAACAG ACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACTCAGTTAAGGGGTGAAGCCCAGAAGATGAAAGACACTAAT ATGGGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTCAAGTCTCAATTTATATTCAGTATCTTTTTCTTTTTTTCTTTTTG AGGTGGCATGAGTTCTTGGGAGTTCTGTATTCTAGATCATTTTGAGCTTTCTAAAGTATTGGTGACAAAAAAAGTCCTAA TACTTGCTGAATTAAAAATGAAGTTCGTATCTAATGTGTAGACTGAGAAGAATGAGCTTCGTGATGAGAAGCAGAGGCTC AAGACAGAGAAAGAGAGGTTGGAGCAGCAGCTGAAATCTATGAATGCACAACCTAGTTTCATGCCCCCCCCTCAAGCACT CCCTGCTGCATTCGCTGCACAAGGCCAAGCCCATGGCAACAAGTTAGTGCCATTTATCAGCTATCCAGGAGTTGCCATGT GGCAATTCTTGCCTCCTGCTGCGCGTGATACCTCACAGGATCACGAGCTTCGTCCACCAGTTGCCTAAGCTAGCAGTGCA ATTCTTTGGACTTTCATTTTGGCCCAAGATTGTATCCAATTACTCATATTTGTTAGTTCTCTAGTAAGTATTCTAACTGG ACCCAGTGGTGGCTTCTGTCTGTATTTGACAAATGATACTATTATGGTTTAATGCTGGTATGTTCGTGTAAATGTGAATA AGTTCATTCTGCTATCTTGGTATCAGTTTTAGTGGTTGCTACTGTGTTCTGAAAATCCAATGTTTAGGTAAATGGTAACA TGATTTCGGTTTAGGCTTACTAGATAAATGCATTTTTGCGAGTATAAATGCTTTGATAATCATGGATGCAGTAGAGCAAT GCTGTGACATATCAGAATTCTCTCAATTGTAAACTCTTTTAACTTTCTTTAATAATTACGTGTTTATTTCACTTAATATG TACTAAATATATGTATTTTTCCAAATATTTATAAGTTATAACATTATCAATCGATCAATTTATTATTGTATTCTTAAATT AAGGTATATATTACCCACTTCAATAACTCTATTTGTTCTTTCCAATTGTACCCAAAAAATAACTACTTTTCACGAATGGA ATGCACAAGCAGAGTTTAAAATGCATTCACACATCATTTAAATGCGTGTGCACTATAAACTTCACCTATATTTTTATCAT GTCA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0151000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGTTTGATCGACGATATTCCCGCCCCTGAGGTCACCTTCAC TGTCCCTCCCTCCGGATTCACCTGGCCCTCCTCTCAACCCTTGAATTCCTCTTCCAATGTCGTCGGTGTTGAGATTGATG GCTCATTAGGGGATTCTGACAGTCTCAAAGAGCCTGGTTCGAAGAAGAGGGTCAGATCTGAGTCATGTTCTGCTACTAGC TCCAAAGCATGCCGGGAGAAGTTGCGTCGAGACAAACTTAATGACAAGTTTGTTGAACTGGGCTCCATATTGGAGCCTGG AAGACCTCCCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACTCAGTTAAGGGGTGAAGCCCAGA AGATGAAAGACACTAATATGGGTCTTCAAGAGAAGATTAAAGAGTTAAAGACTGAGAAGAATGAGCTTCGTGATGAGAAG CAGAGGCTCAAGACAGAGAAAGAGAGGTTGGAGCAGCAGCTGAAATCTATGAATGCACAACCTAGTTTCATGCCCCCCCC TCAAGCACTCCCTGCTGCATTCGCTGCACAAGGCCAAGCCCATGGCAACAAGTTAGTGCCATTTATCAGCTATCCAGGAG TTGCCATGTGGCAATTCTTGCCTCCTGCTGCGCGTGATACCTCACAGGATCACGAGCTTCGTCCACCAGTTGCCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0151000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSRENTNWLFDYGLIDDIPAPEVTFTVPPSGFTWPSSQPLNSSSNVVGVEIDGSLGDSDSLKEPGSKKRVRSESCSATS SKACREKLRRDKLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTEKNELRDEK QRLKTEKERLEQQLKSMNAQPSFMPPPQALPAAFAAQGQAHGNKLVPFISYPGVAMWQFLPPAARDTSQDHELRPPVA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46133:SF11
1 238 238 3.0E-136 –
PANTHER
PTHR46133
1 238 238 3.0E-136 –
MobiDBLite
mobidb-lite
55 80 26 - –
SUPERFAMILY
SSF47459
76 148 73 3.01E-13
IPR036638
ProSiteProfiles
PS50888
77 128 52 13.116
IPR011598
CDD
cd00083
80 133 54 2.19419E-7
IPR011598
Gene3D
G3DSA:4.10.280.10
80 158 79 6.2E-13
IPR036638
Pfam
PF00010
81 128 48 4.3E-10
IPR011598
SMART
SM00353
83 134 52 1.2E-8
IPR011598
Coils
Coil
125 180 56 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0151000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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