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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0152000 |
| Transcript ID | LotjaGi3g1v0152000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/RNI/FBD-like domain protein; TAIR: AT5G56420.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420; TrEMBL-Plants: tr|G7LGM4|G7LGM4_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi3g1v0152000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20421843..20430878) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGCATATTAGACATTCATGAAGAAAAACCTTTTTGTTTTCCCAATTCCATACCCTAAACCTTGGTTTCCCACATTCC CAACCGCGTCTGAGTCTGACTCTGAAGGATTCGGAAGCTGGCTGCTTCGATTCCAATTCTGTTACTTCCCATTTCCCCTT TCATATCTCTGTTCTTTGCGCTCTTGCAATTGCAGGATTTAGCTGGTTTGAGCGTCGCTACCTCCATTTATGCGGTATTT GCTTCTGCTCATAGAAACAAGGTTATATAGTTTTTCTTATTATTTCCCCTTGCTGCATTTGAACCTCTTCGGTGTATGTG CACTCCATTGTAAACCATTACATCCTCTTATACAGATAGGTCCTTTTAATTTGTTTTTGTTGATTAAGGCCCCTTCTTCT TTCAATCAGCCTCTGCATTTTCTACCTAAATGTGATTTTAGGTATAACAGAAAGGCAAAGAAGTCTATGAGGATATATTG AATTGAATTCATGATGGTATTTTTTAATGCTGAGAGTATGATAAGAACCTTGGGAGAACCACACCACAAAAGCTAGCTAT TGTAATTGGAGAGCCCAAGGCCTTATAAACCCCACATTAGAATCCCATACCTCCAATGTGGGACTCAAGTCCCATACCTT GCAATTGGGTTCCTAACAAAGTATATCATAGTTAATGTTTGTGTAGGGCATCATGTGCTGTACTTGTTGTTGGAGCATTT GTAGTTAGTAATACTCATGAGAAGAAAGCAAATGCTTGATAAGATTTTGATTAGCTTATTAACTACTCCCTAATTGACAA GGAGTTAGTTACAAAATTACGTTGGTTAGCTCCCTAGGGAAATAATCCCCTTCTCCAGTGTTATTTAAGTTTTTGCTTTC TAAATTTAAATATGTTTACATGCATTGCCAGCATCTAACTGTTGTCAGCATCTGAACTGCATTTTCGTCATAGGTTTTGC ATGAGGCTACTGTTGAAGTACCAAAACCAAGATCAGGAAGTAGCTACTCCTATCTCAGAAGATTTGATCTAGTATCTTTG TCATGGTATGAATGTTTATCTTATAAAGATACATTTTTATTTTGATGAATTGCCTTTTGTATTCTGCCTACCAAATCACC TGCTTTTTTAACTAGTCATGACTTATATCTGTTAGTAGGAACTGAAAAATTTCAGCGTACATGCTTCTATATAACCCTTC AGATAATTTCTCATTTCAGCATGTTTGGTATAGCTTTTTGCACTAACGTCAATGTACTTCACACCAGAAGCTTCACATGG GAGCTTCTATCTAGATGTAGTCTTGGACTCACCTGGGTGGCTACTGGGTTCCGAACACCTTCTAAAATTACCTTGCATCA TTTTGGAGAAGCACAGACATAAACATCTTGGAAAAAAAGAGAGGGGGAAAAGTGTAGATAGACTTCCTTATGGCAGAGTT CGAAAAACATAACCTATCTTTAATTTACAGATTGTCTATTCTCCTCTTCATTCACCATCTTTGTGCTAGACTTCTTGTCA ACAGTTATCTGTGAAAAATCATTTTTCCCCTGCTTTTTACATCAACCCTTTACTTTCCATTCTCCACTGTAAGGAGAATT TGAGATAAAAGAAAGATACTTTATTATTTGATAGGTAATGAATTTTGGTAACCAAATATCAAAAGCATTGTTGAAATTAT TTGTAGTATTCTACATAACTATTGATACTTCAATAATAATACTTGATTTAGAAGTAAAATATTTATAGATTAGGTTCCTA GAGGTTTCCTAGTCAACTAGTAACTATAAAACAATAAAATCTTATCTTATCCTGGAGAGGTCCCGCCGTAGGGCGTTTCG GGAAGAATGTACCCCCAAGCTGAAGGTGACAGAGAATAGCCACATGGCGGGCAGACGATTGCAAGGCGATTGGGCCGGGA ATAGCGAGCCCCAACTAGCCCATTTAGCTTAAGGATTAGGGTTTCTATGTAACCACCCTATAAAAGGGAACTCTTGTACC TTGAAAATGGGCTTTTTGACATTTATCTAAAAAAAGCTAGAATATTACCTCACCCTGCTTCTACTACGGTTTGGGGCCTA TACCCGTTCTGAGTGTTCATTCCGGAACATGTCCCAATCTATCATAACAATATAACATCTATCATCCGAGGTTATATGGA GGTTCTTAGTGGTCTTGGTGCTTTGTTTTGGGTGCTTGGTTCATTGGTTTGATCCTGGTTGCGGGTTCGAGGGTTTTTGG CCTTGGTCTTTTATTTTATTTTGGGCTTTGGTGTTGTTTAGGGTGGTTTTTGCCCGGGTGTTAGGTTTGTTCTCTTTTGT CTGTTTGGGCCATTTTGTCATGGTCTTTTTGATGATTTTCTCTTTTTTCCTGTAGCAAATCAGTTGCGTTTGGCTTTCCT ATTCGAGAGGCATGCTCTCAAACCTTGATTTATTAATATATATTTTCACTTTCTTAAAAAAACGGCGAGGCCTCGCTAAA GCTCCGCTTCTTGAACTTGAAACTCCCTGACATTAGAGAGTGCCCAGTTCTCTCCGCTTCTCCTTTCAGCAATATAAAAT CTAATCTTAATAAACCATATCATAACAAATCTATTTCAAGAAAATATTTCATAATAGATATCTCTTATTAGATATCTCAA CACTACCCCTCAAGCTAAAGCTTACTTAGCTTTAAGCTTGTAACAAATTGATCTCAACAATATATAGATATCTCTAAATA ATGAGGATCTTGACGAATATCTGAATTGCATAGGTCAACTTTTCGATCTTCTGCTAAATCAATGGTTAGACAACAGACAA TAACTCATACTTGATCTGGCTGAGATCGGTGCAAGTCAAAAACTAATTCTACCGTAGTGTCGTAGGGTCAGCTGAGCCAG CGAACTACGATGGAAAACCAGCTACATTTACCCAAATATAAAACTAGGCTGAAGCAACAGCTAACGGCAACAACCACAAA ATTTAAAACTCGAGGTTGATCGATTGATGGCATTTGAGACAATGGTGTCAACTTTGTCATCGATAACTGTCGAAAACACG CTAATAGCAGTTGAAGCCCTAAAACCCGAAAACCAAAAATCGATTCTAAAACATACAAAGATGACGTCCCAAGACTAAAA ACACTGTAAATAACTCAGAATGAATAATAACAAAGAAAATAATAGATTCAAAAGATTAGAATACCCTCAGGTCATCACGA GGACTTGGTTTGCTTGCTTAATGCGAGTCGGGGAATAGGAAGTCCTCGGTATCTCTCTGATCTAATGATGGATGAATTGG GTAGAAAAGTCACCCTAGCATGTGATGGATCCATGCATTAAGGATGGAACCGTGTGAGTACAACTTTGCACAGGGTCGAG AAAAATTTCTGCACATAACTACTCGTGAGCCCTCGAGACAGCTCATTTCATTTTTGAAGGTGTTAAGATTCTCACGGGGA TCAAAGTCAACCGTGTAGGATTTAACCACAGGAGCCTTCCGAGTTTTTCATGTATATGTATCGTGGCCAAATTTAGTGGG GATAAGGAAGCGGGAAGGGAAGGAATTCACCTTCGTCGTTGAGGTGTGATATAGCTGTCACTTCTCATGGACGACTTCCT CTAGAATCCCGACTCATGTTGTGGCTAAGTTCAGGGATTTCCATTTGTGCTCCTTCATTAAGGAATGGAATCAGGGGTTC CAGATCTTCAATGTGCCTTTGGAAGACTGCAGTTCTTATAGGACAGAAGGCGGTTGCAATGGATCTTTACCGACAAGGAG AAGGTTTACAACCCTTTGGTTCCGCTCTAATTCACGCGACAGTTGTTGCTCTGACACTCTAATGACGTTGTCGCAAAGTC CAAGCACAACGCGTGCAAGGCTATTGTCGTGGTGGCTGGAATGGTTGGTTGTCCTCTATTTCCACGTGATCACCGTTCTG GTTAACTTCTTCGTTGGTAATAATTGCATGGCCCTCTCGCGAGGGGTACAACTTTCTTGCTTTCTTCTAGTGGTCACCAT AAGAGATTTGAATGGGAGTACAATTTGAATTTTCCCACACACGGTGCCTTTTTTCGGGTTATCGAACTTGATAATGTGGC TTAGGCCTAGGTTGATATGATTTGTATTCTGAAAGGCTCCTTGTGAAGGGTCTCATTCTTCTCGTATTCAGGTATCAGGA TGGCACTAGAGGCAGGTACCTACAAGGCACTGTGAAGCTAAGGTCAGCAAGACTAAGAATGAAATAGGATTTAAGTTAGG TAGTGTGTGCCTGAGATGTGTCTTTGTATCATGTATATATACATAGAGTTGCAACAAACCTTAGGAGAATGAATTGTAGA TATGACATAATCATATTACATATATAGTTCGGTATACTTGATATTACCTTAATTAGTAATCCTTATTTTCACAATATGTA GGACCTTGTCAATACTAGGCCAATTCATTGGGCCTATGATTTTATTTCGTCCAAGAAATAAAATTTTAAACAAAGAAATA AGTTAATGCACCGCCATGCGGTTGTGTTTGAATCCTTGAGGAATTCGGTCCATGCTTTTATTCATCATTAAGTATTGCCT ATTAAAAAGCTTTATCATTTCATAAAAAGAAGTATACTTTCGTATCAAAATCGTACACGTGTCGTGAAACATAAATTATG AATTTTTCCCTATTATTCGTAGTCAAATATCTATCAATTCAACTTCCCCATATTAAATCTATTTACTGTGTTCAACGTTG ACAATTCACTACATTTAATTTTGATACATGTAACGGATACACATATTAAAAGCTTTTAATTGCAAAAATAAATGTTCTTT GAATTTTTTTATCGACAATCTTAGAATTTTATATATATATATATATATATATATATATATATATATATATATATATAGAG GTTGTCAGAGCACTACTTCGTTGTTGGTCAAGAAATGGATCCAACAACACAGAACGAAGAAGACACAGGGGGTATTGATA GAATCAATAGTCTATCAAACTCAATTTTGTGCCACATCTTATCATTCCTCCCGACCAAAACGTGTGTGGCGACAAGCCTT GTGTGTCGCAGGTGGCGCAACCTCTGGGAGCACGTCAAGGTGCTAAACCTTTGTGATGATGCTTTTAAGGCTTATGGGAA CCTAGACTTGTTCGAACGCTTTGCCATTTTTGTGAACGGAGTGCTCGCTCTAAGAAAGTGTCGTGAAATTCAAAAGCTAT GTCTCAAATGTGAGTACTCACTTGTAGACATGCTCTCCTCCATCTCTATCACCACATGGGTTCGCGCCGCCATTGGACCC CAACTCGAGGAGTTGCGCCTCGATCTCTACCCTATGGATGGACCTGAGTTTGTGGTCCCTCGTACCCTTTTCACTTGCAC CAATCTCGTCTCTCTCTATCTCTGTGGTCCGATCAACATTCATAATCTTTCTTTAGTTCAGTTGCCATCCTTGAAGGTCT TGCAACTCAACATCGTCTCTGTGGATTCCATTCAGGCACTTTTGTATGGTTGTCCAATCCTTGAAACTCTTGATCTCTCT TTCTCGACCACAAGCTTCCCCATGCTTCGTTTCCCTCCTTCTTTAAAGAGGTTGAATTTTGTGGTTTACGACAAGTCAGG GACTTACCTTGAATTTGACACCCCTTGTCTTAACTATCTCAGAATCGGCCAAAGCTTTGCCCCCTTCAAGTGTTCCTATT GTCACTTACACAAAGTGGTGGAAGCGAATCTTGATGTTTATGTCGCATATGAGTATATGTTTCGCAAGCTTTTACATGCT CTTTCTGGAGTAAAGCATCTAGTCTTGGGTTGTTCTACAACAAAGGTACAATGGAGTTTATAATTTTGCCATAGTTCATA CATAATACATCAAGTTATTTAGTTTTGTGCTAATAATGTCTTGTATGTGTAAACAGAACATGATTCGTGCCCCTACTCTT GATATTCCAAAATTTCGCTATTTACATGAGTTGGAGCTCGTTCTACCACATTTCAACATGAGTTTTGTGGTGAAAATACT CGAGAAATGTCATATGCTTCGACTTCTCACAATTGAGAATAACAATGTTAGTTGAACTCTCAAGTTTAATTATATTTACC TTTGCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGT GTATCATTGTTTGAATATGCTTCTTATATGAACCTTGTTGGTGCCAGGAACCATCCAAATGGGGAAAACCACCTAGGGCT CCTATTTTTCATCATGTATTACACCTGACCTTTATTCACTATAAAGGATATCAAGGATTCACTGATGAGCTAGAGTTTCT TGCGTATGTTTTACGAGAAGGAATTGTTTTGGAGAGAATGATTATATCTACTGATAGATTTTTAGACATTCAACAGAAGA ACAAAGTTCTCAAAAACTTATTGGCATTACCAAGGTGCTCCAGCATGTGTGAAATTAAGTTTGATTGCGCTACATCTCCT TAAGGTATATACTCTCATCATAACTATTATATATGGCTTGCTAATTCAAAGATGACTGGAATTTGATTTTCTCCATATGG AAATGACCTAGTGATTCTTTTCTATCTCTTCATGACCCTTCCATAGTAATTTATTTATGTATTGTCCTAAAGTTGTGTTA TCTATTTTATTGCTTAGTATTGCGCTACTTCAATATTGTGTATTGTTTTGGTTTTTGCTATAAGATGTTAGTCAATTCCT GTAAGTTTTAACTGACAAGGTGTGATATTTAAATAGAGGTTATATTTCAAAGATTTTTTTTTTAAGTTATACTACAATAA AATTTGTAGTAGATTTATTTGGCTACTTATACATGTAACTTGGCCATTTCAAAGTTTGTTAAAGGAAGAAAAGCAATATT TTTTTATAAAATGGGCCTAGTTTTTTAGTGTTCTTCAAGAGGATAGTTGTTATCTATGATACTTTTAAACTAGTAACCCT TTGTATGATTCTACCATTTTGAATTTTTCCTGTAGTTTTACTAAATAAGTAGTCTGATTTGAATTTTTAGTTAATAGTTA ATACTAACTAAATGGAATGATTTGTAAATCCTAATTATATATTGATTGAATCTGACTATCTGAGTAAACTATTAGTCTAA AATTTATGATATAGTAGCGTAGATTAGGCATTTGCAAAGTTCTCGTTATCTAGGCTTCCTTGTTGGTGATATATTTAGTG GAATATGATGACTTTCTTCTGCTTGACTTGTTCCTTTGTATGTTGTGTAGTACTTGTTTGCCTTACTACTAGTAAGGCAA ACAAGTACTACCAAACATAAAAAGGAAACATAAAGAAATCTAGGGGTGTTCATAACCAAACCAAACCAAACTGAACTAAA CCGCTCAAACCAAACCAAAAAACCAAAATATGAACTAACTGATAACCCAAAAAAACCGAAACCTTGAAATCTGCTATTCT GTTAATGGATTGGTTCGGTTTTCAGTTGTCATGTCCAATGCCGAACCAATCCAAACTGAACTGAACGTATTATATATACT AATATACTTGTATTATCGTATATAAAATTACATCTGCGCCCATATTTCATACTACTTTTCACTTATGTCCCATAGTTTGA AGTTTAAACCTAATTTGAAGAGCGAACTGTGGCTGTGATTCTGAATGTGTTACCTCCCCTGCTCTCCGAACCTCTCTGTT CGCCACTCTGTCCTTTCTACAATTTGAAGAGGCAACCTGGTCATCGATTGACCTAGGTCCTCTTTTGCCATCATGAGCTC AAATCTGTGAAGAAAGGGTTTGCACCTATTTGTTCCTGGCTTTCTACTATGGGAGTGCTCTTTGCTGCCTTTGTTGCCTT GGTGTTATTGATTCTGATTGCTAACTTTGTTGGTTTTTTAACTTTGTTGTAAATGACTTTACGCTAATGGTTAAACAATG GACAACAGAGGCGGAAAACTGTTTATTGATTGATTAGTAGCATTTTGGCACAACAGGGTTGAAATTTGTGCTTTCCAAGT TTCAAGTTTCCATTATTTGTTTTGAAGCAATCAAACCCACTTTCCATTTGCATTCTAGTTGATGTATGCTTTCAAAAAAT ACCCAATGATGTACAATTAACAACTGTTAAAAATGTTGTATATTCATTCTGATACATATTTCTTTCTCTGTTTCCATTTT TGTGTTTGGTAGTACTTGTTTGCCTTACTGCCCAGTTAATAGGTTACTCCTTCTAGAGCAAAATAGATATCATAAATATA TTACTTCACTTGTTTGCCTGCTAATTAATAGGCTACTCTTTCTAGAGCAAAATAATTTTCAAAAACCTGCTGAGTAACTT GTTTGTCTTACTGCCCAGTTTTAAAGGAATCATCTATTTCTTTCTCAAGATGATTCTTTTTCATGTCTTCATATAGTAAT ATTTTTTATCTGCTATATGTTGATTATCTTTAGTTTTGCAGACAAAATATGCTGGAAGAGTGAAGTTTGAACGAAGTGAA AGCTAGCTAACACCAAGGAGCTACAACTGATTACTTGATTTAGTTGTTTTGTCTTTGAGATGAAGTATTAAACTATTAAG GATTGGATTTGAGTTGTATTGTCTCTGTTGGATGTTGTCCGTTTGAGTTTTTGGATTTATTGGTGATATTTTATATTTGT CTTGACTTTTTAATTTCAAACATAAAATGTGATGTTTTAGTGTCTTAATTATGTTCTGTTTAGTTATTTATTTTAATATT CATAGCTTTGAAAAACTGAAATCCATTCCAATCCAAAAACAATAGAAGTTGGATTGGATTTAAGCATTAAAAACAGAACT GGTTGGATGATTAATTGACAAAACCGATTTTGACCGGATGAATTTTTCCCTCAAAACAGAACCAATCTAGATTGCGAACA CCCATATCTTGCAGTCCTTTCTTGCAATACTATAATTTTGAAGTTGTCAAAATCATCTTTACCTAGATTCTTTCAACTTC ACCAATGACGTGACATTTAGAATAAAACGGATGGATGTGTATTTTTCGCTTTATGAACGTTATATGTATCTTTGAC
CDS sequence (LotjaGi3g1v0152000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCGCAAGCTTTTACATGCTCTTTCTGGAGTAAAGCATCTAGTCTTGGGTTGTTCTACAACAAAGAACATGATTCG TGCCCCTACTCTTGATATTCCAAAATTTCGCTATTTACATGAGTTGGAGCTCGTTCTACCACATTTCAACATGAGTTTTG TGGTGAAAATACTCGAGAAATGTCATATGCTTCGACTTCTCACAATTGAGAATAACAATGAACCATCCAAATGGGGAAAA CCACCTAGGGCTCCTATTTTTCATCATGTATTACACCTGACCTTTATTCACTATAAAGGATATCAAGGATTCACTGATGA GCTAGAGTTTCTTGCGTATGTTTTACGAGAAGGAATTGTTTTGGAGAGAATGATTATATCTACTGATAGATTTTTAGACA TTCAACAGAAGAACAAAGTTCTCAAAAACTTATTGGCATTACCAAGGTGCTCCAGCATGTGTGAAATTAAGTTTGATTGC GCTACATCTCCTTAA
Protein sequence (LotjaGi3g1v0152000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRKLLHALSGVKHLVLGCSTTKNMIRAPTLDIPKFRYLHELELVLPHFNMSFVVKILEKCHMLRLLTIENNNEPSKWGK PPRAPIFHHVLHLTFIHYKGYQGFTDELEFLAYVLREGIVLERMIISTDRFLDIQQKNKVLKNLLALPRCSSMCEIKFDC ATSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 5 | 12 | 8 | - | – | |
| Phobius | 13 | 18 | 6 | - | – | |
| Phobius | 19 | 164 | 146 | - | – | |
| SMART | 90 | 159 | 70 | 1.3E-7 | ||
| Pfam | 92 | 126 | 35 | 1.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0152000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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