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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0154200 |
| Transcript ID | LotjaGi3g1v0154200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chemotaxis protein CheY; TAIR: AT5G48480.1 Lactoylglutathione lyase / glyoxalase I family protein; Swiss-Prot: sp|Q9LV66|Y5848_ARATH Uncharacterized protein At5g48480; TrEMBL-Plants: tr|C6SZI9|C6SZI9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0154200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20947434..20948883) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTATGTTTCTCTCTGGTTGTGTTAGGGTTCTTCTAGTCTCTCTCTCTACTATATTCTTCGTTGTCTCTGCTTCAATG GCTTTGCATGAGATCAAAAATTGTGGATCTGGGAACTTTGTCGCACCTAATGTGCCATTCTGCAACATGAAGCCGCTTCT GATTGTGGAGGCTCCGAAGGCGAATGATGCTATTGCGTTCTACAAGGCCGCGTTCGGCGCACATGAGGTGGGTCGCACGA TGGAATCTAAGCGCATGGCAGACCAAGAGATTCCTCTCATCCTCGCAGCTGAACTCGAGATCGGTGGTTTCACTTTTTAT GTCTCAGACTTCATTCATGACTCTGATAACATGTGAGATTTTTTTTTCGCGAATCTTCTTATAAGATCGATTAATAATGT TGTATTTTTTCCTCTGATTTTTAAATTATTTCATTATTTCATTTTATTGTGACATTCATGTGTTATTTTCCATTTTTTGC TTTCTTTCTTATTTACATTGCATCCTTTACCAGTTTTATTTTGTTGTTATGTTGATTTTTCGTATTTTTTCAACTTGTCT CTAAAAAATTTAGGTTATTGTTATTTTTTGTGTAATTTTTTTCATTGTTTTGATGATTTATTAATTTATATTCTTTCTTT GATTTAGCGGTAGTTATTTTTCTCGTGATACATATTTTGTTTATTTATTCGTGATATGTTTGTTGTTAAGAGCTTAATGT GATTCAACTTTATGGTGTTGATTATATTAGGTTTGGGATGGTAAAATGTGGATTTTAATTTCAAGTGTAGTTTTATTTTG TTTCATGTTTGGATGTTGGCTATGTAAAACTTCTTTCATTTCTAAAAAAAAAATGATTACAAAGTAAGGGAACATTATAT TCTACCAATTTATTTTGATATAATTTATTAATTTGGTTAATTATCTTTAGAATACCATATATTAGTAATTAATGTTTCAT TGCATTTTAGAACCTAGAGTGCACCCACAATTATCTCATATTTTATTGTGATGTATTATTTTTATTGCAAATATTAGTTT TAATTACATTGGTTTTTATTTGTCCTATATGTGAATGCTTTGTTTGTTTGGATGAATATATTCACATATTTATCTTTCTT TTTCATTGATTTTCTTTTTATCTTAGCCCGAGGACTGGAGGGAACAACATTGTTATGATCTTAGAGACTGAGGATGTAAT TGCTGCAATTGCTAAGGCTGTGAGCGCTGGAGCTGTAGTGGAAAGAGAGATTGTCAAAGGGGCAAGACGTGGGTGTATGG GATGGGTCAAGGACCCATATGGCTTTGTTTGGAATATATTGTCCCTTTAGAAAGGAAAAGTGTAGTGAGGGCGAGGCTTG TTATGACTATTTAAAAATTTGAAGAATAATGTTTTGAACTATGAACTTAGTGGTTCATGAATAAAATATTTCTAGTAATT TTTGAATTGT
CDS sequence (LotjaGi3g1v0154200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTCTCTGGTTGTGTTAGGGTTCTTCTAGTCTCTCTCTCTACTATATTCTTCGTTGTCTCTGCTTCAATGGCTTT GCATGAGATCAAAAATTGTGGATCTGGGAACTTTGTCGCACCTAATGTGCCATTCTGCAACATGAAGCCGCTTCTGATTG TGGAGGCTCCGAAGGCGAATGATGCTATTGCGTTCTACAAGGCCGCGTTCGGCGCACATGAGGTGGGTCGCACGATGGAA TCTAAGCGCATGGCAGACCAAGAGATTCCTCTCATCCTCGCAGCTGAACTCGAGATCGGTGGTTTCACTTTTTATGTCTC AGACTTCATTCATGACTCTGATAACATCCCGAGGACTGGAGGGAACAACATTGTTATGATCTTAGAGACTGAGGATGTAA TTGCTGCAATTGCTAAGGCTGTGAGCGCTGGAGCTGTAGTGGAAAGAGAGATTGTCAAAGGGGCAAGACGTGGGTGTATG GGATGGGTCAAGGACCCATATGGCTTTGTTTGGAATATATTGTCCCTTTAG
Protein sequence (LotjaGi3g1v0154200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLSGCVRVLLVSLSTIFFVVSASMALHEIKNCGSGNFVAPNVPFCNMKPLLIVEAPKANDAIAFYKAAFGAHEVGRTME SKRMADQEIPLILAAELEIGGFTFYVSDFIHDSDNIPRTGGNNIVMILETEDVIAAIAKAVSAGAVVEREIVKGARRGCM GWVKDPYGFVWNILSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 176 | 150 | - | – | |
| PANTHER | 40 | 175 | 136 | 2.9E-44 | – | |
| PANTHER | 40 | 175 | 136 | 2.9E-44 | – | |
| Gene3D | 44 | 176 | 133 | 7.5E-43 | ||
| CDD | 49 | 173 | 125 | 2.01687E-29 | – | |
| SUPERFAMILY | 50 | 174 | 125 | 2.55E-21 | ||
| Pfam | 54 | 173 | 120 | 8.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0154200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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