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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0154300 |
| Transcript ID | LotjaGi3g1v0154300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin cytoskeleton-regulatory complex protein pan1, putative isoform 1; TAIR: AT2G34010.2 verprolin; Swiss-Prot: sp|F4IGU3|SPER2_ARATH Protein SPEAR2; TrEMBL-Plants: tr|K7LWF8|K7LWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0154300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20957662..20960382) extracted from Lotus japonicus Gifu genome v1.2.
TAGAGAACAACACCTACAACTTCAACTACAACTTGGGTTCTGAGAGAGCGTGTGTGTAGGAACAAAATAAGGAGGTTGGA GCGAGAATCTGGGCTATAATTGAGTTATCATTCATAGTTGCTCTAGATTTGCTTTGCATGGTTTTGGTTTACTTTAAATT TTGAAAATCTTTTATTTTTGTTTCAGCTTTTTACTCTCATCTCAGACAACTAAGTAACCTTATTTTCATCAAAATCGGAG ATCTTTCAGAATCTCTCTCTCTCTGCTTAATACTTGCCTAGCCTTTTGGTGTTTGTTTCACAAATTCTCCATCCATTCAT CCAGCGAGAGAGTTAAAATTTAAGGTAATCTAGCTAAAATTACTTCTCAATTACCTCTTAGATTTTGCTCTCAGATTACT TCTGAATTGTACGTATAAAAAAAATTTGACACACACACACTCTCTCTCAATATCTTAATCTGTGATATGAATCTGATTTT TGGTATGATGATGATTGCTTCAGTAGTGCATACATAGTAATAATGCATAAGCATTGAGTCCTTGTTTGTTATTATCTTTG TAGAGTGTAGATGGAAGAGGATCAAGAGGACAATTCCCGAAGCTATAGCAATGGTGGTGGCAGTGGCGGCGGTGGCGGCA ACAATGGAAGATCATTGAAAAAGGCAAAGCAGAGAAAGGTTCCACAGAGAGGACTTGGCGTGGCACAGCTAGAAAAGATA AGACTCGAAGAACAGGAAAAGAGAGATGTCAATGGCACTCCAATTTCATCATCATCATCCTCCACCAAATCCTCTTATCT GAATAATTTTCATCATTCTTCTTCCACCACCACCACCCCTTTACCTACTAGACCACCGCCACCACCGGAGTTTAGGCCTT CTCTGCCACTTCAATACATGGATGTTAAACTTCCAAGCACTGTTCCATTGGGTGGATTTGAGGCTGGTTGGCCCTCTGTT TCACTTTCTGGTCATGGGAATTTGCCAAAGTTGTGGAATTCCCACGAATTTGATTTTGAGAATGACACATTTGGGGTTGA ACCAGGATTGCCTTTTCTTCCCAATTTGGCTTTTGATCAATCCAGTCCTACTTGGTCTCTGCCCAATTGGGGGCAGAGGC CATCACAGTATCATCATCAACCACCAATGGTGAGATTTTTATGCATTCAACTTCCATGATGGGGTTTCAATTTGGCATCT TTATTCAAGTTAACTTTCCTTGGAATAAGAAAGATTTGGTTTGTGGAACATGTAGGTGAATATCCCATCAGGTACTTCAT CAACACATGTGCCTCATTTCTCAATAGAGCCCCCTTCAAACCAAAATTATAGTGCCAATGGTGTGCTAGCAAGGCCAGAG GAGAAGGTATGTACAAGTTGTGTTCTTTAAGTAATTCATCTGCATAATTCATTTTGATCAATATTTTATAATACTAGTAG TCTAGGAGACCAAAGAGCACTTATTGAGTGTTTTTTTCTAGCAGATGTAAGTGTTCTTTAGTCCGTATTCAAACGGGATG TAGTACTAACTCTTTCATATGGGTAAATTTTCTCTGCATCTTTTGTTGGATAGTGATATCTTAAACTTAATCATGCATAT TCTCAACAAATTCAGTGAAATTTTGGATTGATACTGTCACACATTTTGATAGAAGGCATTTTCCTCAGAATTTGCTATTA AGGTTATGTGTATTTGACATAGGTGTTTGAAACTTGTTGCAGATAGTTGGCATGAAACGGCCCTACCCTTTCTCCCTGGA TATTCCAGATGTGCCTGCATTCAATTGTAAATTGCCTACCTTTGCTGAATTAAGTGCTAATGCAAGACCTACATTCGAGA GTGGAAGTGGATTTAACTTTGATGTTGGCAATTCATTTTCCAGGTTTTTTAAGCTTCTTTTCTTGGCCTCTATGTTGTAA ATCAATTACAATTGCAATTCTCCTTTCCTCACATGATTTTCTGCACCAATTTCAGAGAAGTCCCATCCTGTTCTGCTTCC AACTCTGAAGAACCAAACTTGAAGAAAACAAATAAAGGGCATAATAAGCATTTAGATGGACATTTTCTCACCTTGGCTAC TCCTATCCCTACTTCAAGTCCACCTTCACTGTTCAACTCTTCAACTTCCTTTCCATTTCACTATCAAGAATGTCCTGAAT TTGAATCTCCACCTCTTCAGGTTTGTGGAAACAAACTCATTAGCCATTGCCCCCTCTCTTCCAATTTTTCTTATTTGATT ATTCATTGTTGACTTGTATTTCATCTGCTATAGGGAAACATAGAAGATCAAATGGCTATCCCACCAGGCTACAGGCTATA TAATCAACAAAAGCAACCTTTGTACAGCTTCTTCCTTCCATCAGTGCAAATTGGACAAACAACAGCAAGAATTCAGAATT CTCAGGAAGTTGGAGAAAATATTGATCTTAATTTGAAGCTATGAATATAGACATATCAGTTTAAAGCCAGTTGTTCATCA CTATGGAACTTGCATAGTTATATTTGAGTTTAAATTTTACAAGTTGTAGATATTCCTAAATATGCACATGGAGAGCTCAA TGTGAAAAGAACTAAATCATCCATGTGAGAAAATGGATCTGAGAATGAAAGTAGAGGTGAGTTGCTAATGACTATGTGCT TTTCATGAGGCCCATCTCCAACTCCAATAGTATATATATGCCTTTGCTATGGGATTTTTCTCCTGCTGTTTCCTCCTTTA G
CDS sequence (LotjaGi3g1v0154300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAGGATCAAGAGGACAATTCCCGAAGCTATAGCAATGGTGGTGGCAGTGGCGGCGGTGGCGGCAACAATGGAAG ATCATTGAAAAAGGCAAAGCAGAGAAAGGTTCCACAGAGAGGACTTGGCGTGGCACAGCTAGAAAAGATAAGACTCGAAG AACAGGAAAAGAGAGATGTCAATGGCACTCCAATTTCATCATCATCATCCTCCACCAAATCCTCTTATCTGAATAATTTT CATCATTCTTCTTCCACCACCACCACCCCTTTACCTACTAGACCACCGCCACCACCGGAGTTTAGGCCTTCTCTGCCACT TCAATACATGGATGTTAAACTTCCAAGCACTGTTCCATTGGGTGGATTTGAGGCTGGTTGGCCCTCTGTTTCACTTTCTG GTCATGGGAATTTGCCAAAGTTGTGGAATTCCCACGAATTTGATTTTGAGAATGACACATTTGGGGTTGAACCAGGATTG CCTTTTCTTCCCAATTTGGCTTTTGATCAATCCAGTCCTACTTGGTCTCTGCCCAATTGGGGGCAGAGGCCATCACAGTA TCATCATCAACCACCAATGGTGAATATCCCATCAGGTACTTCATCAACACATGTGCCTCATTTCTCAATAGAGCCCCCTT CAAACCAAAATTATAGTGCCAATGGTGTGCTAGCAAGGCCAGAGGAGAAGATAGTTGGCATGAAACGGCCCTACCCTTTC TCCCTGGATATTCCAGATGTGCCTGCATTCAATTGTAAATTGCCTACCTTTGCTGAATTAAGTGCTAATGCAAGACCTAC ATTCGAGAGTGGAAGTGGATTTAACTTTGATGTTGGCAATTCATTTTCCAGAGAAGTCCCATCCTGTTCTGCTTCCAACT CTGAAGAACCAAACTTGAAGAAAACAAATAAAGGGCATAATAAGCATTTAGATGGACATTTTCTCACCTTGGCTACTCCT ATCCCTACTTCAAGTCCACCTTCACTGTTCAACTCTTCAACTTCCTTTCCATTTCACTATCAAGAATGTCCTGAATTTGA ATCTCCACCTCTTCAGGGAAACATAGAAGATCAAATGGCTATCCCACCAGGCTACAGGCTATATAATCAACAAAAGCAAC CTTTGTACAGCTTCTTCCTTCCATCAGTGCAAATTGGACAAACAACAGCAAGAATTCAGAATTCTCAGGAAGTTGGAGAA AATATTGATCTTAATTTGAAGCTATGA
Protein sequence (LotjaGi3g1v0154300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDQEDNSRSYSNGGGSGGGGGNNGRSLKKAKQRKVPQRGLGVAQLEKIRLEEQEKRDVNGTPISSSSSSTKSSYLNNF HHSSSTTTTPLPTRPPPPPEFRPSLPLQYMDVKLPSTVPLGGFEAGWPSVSLSGHGNLPKLWNSHEFDFENDTFGVEPGL PFLPNLAFDQSSPTWSLPNWGQRPSQYHHQPPMVNIPSGTSSTHVPHFSIEPPSNQNYSANGVLARPEEKIVGMKRPYPF SLDIPDVPAFNCKLPTFAELSANARPTFESGSGFNFDVGNSFSREVPSCSASNSEEPNLKKTNKGHNKHLDGHFLTLATP IPTSSPPSLFNSSTSFPFHYQECPEFESPPLQGNIEDQMAIPPGYRLYNQQKQPLYSFFLPSVQIGQTTARIQNSQEVGE NIDLNLKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 104 | 104 | - | – | |
| PANTHER | 2 | 408 | 407 | 3.8E-69 | – | |
| PANTHER | 2 | 408 | 407 | 3.8E-69 | ||
| MobiDBLite | 61 | 89 | 29 | - | – | |
| MobiDBLite | 90 | 104 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi3g1v0154300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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