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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0155700 |
| Transcript ID | LotjaGi3g1v0155700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PRA1 family protein; TAIR: AT4G27540.1 prenylated RAB acceptor 1.H; Swiss-Prot: sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H; TrEMBL-Plants: tr|A0A0L9ULW4|A0A0L9ULW4_PHAAN PRA1 family protein; Found in the gene: LotjaGi3g1v0155700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21252542..21254739) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGGTTGCGTTGAAAAGCTGAAGTGAAGGAAAAGAAAGCTATGGTGTTCTCTGCCAATCCCTTTGCACTCAGCGTTCC CGAACCCGCCTTCGAATCATGGCTCCGCGACACTGGTTACCTCGAAGTCCTCGACCACCGAACCTCCGCCGCTGCTTCCG CCGCCGCAACCTCCAATTCCGCCCCGATACCCACCACCGGTCTCTTCTCTCGCCTCGTGACCCTCCTCTCCCTCTTCACT CTCAACCCCTTTTCTAAGCTCACCGCCGAGGATTTCGCCGGCGACACCCCTTCTTGGTCCCGCTCCTTCATCGGCTTCTG CGGCTCCTACTCCTTCCCTTCCTCTCCCTCCCAAGCTCGCTTCAGGGTCCTCGAAAATGTCAAGCGTTACGCTCGCAACT ACGCCTTCCTCTTCATCGTTTTCTTCGCTTGCGCTTTGTAAGCTCTTGTTGCTTCTTTGTTTGTATTTTTTTTTTTGTGA ATTTTGTTTTTGTGAATTGGAGAACTTAGTATAGCTATTTTTGTTACATTGTTAACGTGTTTGGTGAAAACTGTTGTTTT GTTTTTTATTGTGCAGGTATAAGATGCCTCTTGCCCTTGTTGGGTTGATTTCATGTTTGGCATTGTGGGATTTCTTCAAG TATTGTAGTGATAGATGGGGGTTGGATCAATATCCTCTCATTCGACAGTGTTTGCTTCGCATTGCGCAATGTGGTGAGCA ATAATTTCTGATATTTTGTAGCAATTAGCATCCATGTGTTGTGTGCTTAGAGCTAGTTTGAATAGATTTCTCATTAAGCA ATTATAGGGGGAATGTTATAAGTAAGAGCTTCTCATATAAGTAGTTTCTACTTATGTATCTCAACTTTTCTTTGGGAAAC TTACTCATTTAGGGTATGTTTGGATCGATGGTAGGGAGTGGAATGGGGTGCGATGTTTTTATGTTCCATTGTTTCAGTAT GTTAAGTTAGATGAGGATGGAAACTGATGGAATCCGTTCCATCTCATTCCGTTACTTACCATCAATTTTTGAACCCCCCC AATCTGGATGGAATGGGCTCTTCCTAAGCTAATATGCTAACACTTATATTAATTGAAAAGCTCTCATAAGCTAGATGCTA ATCCAAACTGGGTTATTCGCATAATTTTACATAGTTTTGCTTAGCAATGTATTGTACATTGCTTATGGATGCTGCAAAAT TATCTCTAACTTGATGTGCCCAAGATTAATTGGAACTTCTGTTTCTGAATCTCAACTCTTGCAGCAACAGCAGTTATTCT AATATTTTCCAATGTTCAAATGGCTCTCTTTTGTGCATTAAGTGTCGGCTATGCAGGTGAATAATCTTTATACATTTTTA GTCTTCTTGCTACCTTGTTTCCTTCCTTAACTGGTCTCCTACATTAGTCGGTTCTCAAGTTAAAATATTTGTTGTAGGTG TGATACTGCATGCTGCATTTCGGAAGTTGACCCCTGTAAAGCCCCCTTCTTCAAGCAGAAGTAGATAGTTGGTTAATTGA AGAAACAGTGACACACTTGCCTTTATACAGGACCAGCAGATCATAGTTCACTACTTCAGTGATTCAGGGGGCTTTGGTAC AAAATGGTGCTTACAATGTAGATTTAGAGGACATGACTTTGGTACAGAAGACTGTGCAATGTAGAATTTAGGGACAGGTA TTGGCTTAGGCACTGATAGTCTCTAGTTTGATGATTTTCATGTTTAGATTTACATGTAGTAAGAAAGGGTTCATTATTTC TACATTTATCTTATGTTTATTTATTTTCTACTTTCTAAATGCCAGACAAAAGACAGAAGTTTTGAATTTCATTTAATGAT ATATGTAAGAAATAAGAATGATGAGATACCAAATGAGCCTTTTATTTGCATATCTAATCCTATTTTATATTTTATATATC GGTTGCCTGCGTGGCCCTCTTGGGACTTAAAAGGATCTAAGCCTCATGTTCTAAATATGCACTTTTACTCATCCAAACTA TACTTCTTGTAGGCAGCTATTATGGATTTCACTCAACTAATGGTTTTAAAGTGATAGTCCATGTTCGTACTCCAAGGTAG CTACATGCTCTGGTACCCATTTAAAATGAGATGGTTTAAAATTCTTCACTTCATTATTTGAAATGTGAAGGACTAAATTG CAAATTGTAAAATTTTATTTCGGAAGATTGCAAAGAAG
CDS sequence (LotjaGi3g1v0155700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTCTCTGCCAATCCCTTTGCACTCAGCGTTCCCGAACCCGCCTTCGAATCATGGCTCCGCGACACTGGTTACCT CGAAGTCCTCGACCACCGAACCTCCGCCGCTGCTTCCGCCGCCGCAACCTCCAATTCCGCCCCGATACCCACCACCGGTC TCTTCTCTCGCCTCGTGACCCTCCTCTCCCTCTTCACTCTCAACCCCTTTTCTAAGCTCACCGCCGAGGATTTCGCCGGC GACACCCCTTCTTGGTCCCGCTCCTTCATCGGCTTCTGCGGCTCCTACTCCTTCCCTTCCTCTCCCTCCCAAGCTCGCTT CAGGGTCCTCGAAAATGTCAAGCGTTACGCTCGCAACTACGCCTTCCTCTTCATCGTTTTCTTCGCTTGCGCTTTGTATA AGATGCCTCTTGCCCTTGTTGGGTTGATTTCATGTTTGGCATTGTGGGATTTCTTCAAGTATTGTAGTGATAGATGGGGG TTGGATCAATATCCTCTCATTCGACAGTGTTTGCTTCGCATTGCGCAATGTGCAACAGCAGTTATTCTAATATTTTCCAA TGTTCAAATGGCTCTCTTTTGTGCATTAAGTGTCGGCTATGCAGGTGTGATACTGCATGCTGCATTTCGGAAGTTGACCC CTGTAAAGCCCCCTTCTTCAAGCAGAAGTAGATAG
Protein sequence (LotjaGi3g1v0155700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFSANPFALSVPEPAFESWLRDTGYLEVLDHRTSAAASAAATSNSAPIPTTGLFSRLVTLLSLFTLNPFSKLTAEDFAG DTPSWSRSFIGFCGSYSFPSSPSQARFRVLENVKRYARNYAFLFIVFFACALYKMPLALVGLISCLALWDFFKYCSDRWG LDQYPLIRQCLLRIAQCATAVILIFSNVQMALFCALSVGYAGVILHAAFRKLTPVKPPSSSRSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 119 | 119 | - | – | |
| PANTHER | 1 | 216 | 216 | 9.0E-89 | – | |
| PANTHER | 1 | 216 | 216 | 9.0E-89 | ||
| Pfam | 92 | 211 | 120 | 8.0E-16 | ||
| Phobius | 120 | 149 | 30 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 150 | 189 | 40 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| Phobius | 190 | 209 | 20 | - | – | |
| Phobius | 210 | 224 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0155700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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