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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0156000 |
| Transcript ID | LotjaGi3g1v0156000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT3G15210.1 ethylene responsive element binding factor 4; Swiss-Prot: sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4; TrEMBL-Plants: tr|A0A072VB55|A0A072VB55_MEDTR AP2 domain class transcription factor; Found in the gene: LotjaGi3g1v0156000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21296025..21297643) extracted from Lotus japonicus Gifu genome v1.2.
TCTAAACCATGAATTTCCATTTGAGAAGAAAAAAATTGTTAAAAAAATAATAATAATAATAAAGATTAATAGGGAATGAG GATAAACAAGTGAAGTAGAAGGTGGCAATTGTCAGTAGGGAATTGGCTCACAGCATCCACCAAGGTGGTTCGTGCTAAGG AAGCCACGTTCTATAATAAAAGCATCAATCGCTTAAAAGGAGCGTAGCTTTACACACGCACGAACACACACACGCACTGT TTACTCTCTCTCTCTCTCTCTCTCTCACATTCTCACGCTATAAAAACCCCTTAACTCCACTTGTTTCCCTCATGCATTGT TTATGTAGTGCTCTCACTTTTCCTGTCTCCCATTAAGAAATTTTACTTTTACATTCTCAAACAACACAAATCAATGGCTC CAAGGGACAGAGCCACCGCACACTCCGCCGCAACACCCCACAACGCCGCCGCTAAGGAGATCCGTTACCGCGGCGTCAGG AAGCGCCCATGGGGACGTTATGCCGCCGAGATCCGTGACCCGGGGAAGAAAACACGCGTCTGGCTTGGGACCTTTGACAC CGCGGAGGAAGCGGCGAAGGCTTACGACACGGCGGCGCGTGAGTTTCGTGGTGCTAAGGCTAAGACGAATTTCCCCACCG CGTCTGAGCTTGTGAACAGCATCACCACACGGAGCAGCCCTAGCCACAGCAGCACGCTCGAGTCTTCCTCCCCTCCGCCG CAACCGTCGCCGCTGGACCTCACGCTTACACCCCCGCTCTCCACCGGCGCGTTCCAAGTTGCGCGTCCTGTGATGTTTTT CGACGCGTTTGCTCGTCCGGAGACCATGCTGAGCATCGGTCGGCGTGAGATGTGCGGGTTTGATCTCCCGGTGGCTGATT TTAGACTCGCCACCGCTGCCGCCGCCGCGCACAGTGACTCTGATTCTTCCTCCGTCGTGGACTACGAGCGTGTCCTGCGT GAGAGACTCTTGGATCTTGACCTCAACGTCCCTCCTCCGCCGGAGGTTGCTTGATCCGACGCCGTTTTGATAGATCTGAT TTTTTGCCATTTTGGACCCTTCTGCGATGATGATGATAACCACCATGTCTTGTAAATATACCATAACCAAAAGCTAGAAA ACAAGGCCTTGTGCTTTTTCTTTCTTTTTTTGCAACCGAGAACTTGTTTAGAAGTTTTTCATGGTTGTTTCTGCAATTGC TGTTCATCTTTGATAATATATTAATTATATGAAGGCATTTTCATCACAATATGTTTATGTTTTTCCCTTTATTTCTTGCT CCTTGATTCAACTTCACTTTATCTTTTGGTAGTTGATGAATTATTTTTTGGGATAAGATTGAACTTTATTTGATATGGAG AAAGTGTAGAAAAAATACATGTATTATTCTTAACCTTTTAGCATACCCCAAGGTTATCCATTAGTTGAGATCTAGGATAT TGCGATTTTCCCTGCATTTTTCGATTAACAAAGGAGGAGCAAGATTTGTTTTGTATTCTGCAACGTGTGTCCCCTTGGCC TTTTTTTTATCACTCGGTGCGTGGTTGGATTTCGTGGTTGAGATTTGACAGACAATTCGCCGCCATTGTTGCGCGTTTGA GTAGGGTATTGTCGTGGGG
CDS sequence (LotjaGi3g1v0156000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCAAGGGACAGAGCCACCGCACACTCCGCCGCAACACCCCACAACGCCGCCGCTAAGGAGATCCGTTACCGCGG CGTCAGGAAGCGCCCATGGGGACGTTATGCCGCCGAGATCCGTGACCCGGGGAAGAAAACACGCGTCTGGCTTGGGACCT TTGACACCGCGGAGGAAGCGGCGAAGGCTTACGACACGGCGGCGCGTGAGTTTCGTGGTGCTAAGGCTAAGACGAATTTC CCCACCGCGTCTGAGCTTGTGAACAGCATCACCACACGGAGCAGCCCTAGCCACAGCAGCACGCTCGAGTCTTCCTCCCC TCCGCCGCAACCGTCGCCGCTGGACCTCACGCTTACACCCCCGCTCTCCACCGGCGCGTTCCAAGTTGCGCGTCCTGTGA TGTTTTTCGACGCGTTTGCTCGTCCGGAGACCATGCTGAGCATCGGTCGGCGTGAGATGTGCGGGTTTGATCTCCCGGTG GCTGATTTTAGACTCGCCACCGCTGCCGCCGCCGCGCACAGTGACTCTGATTCTTCCTCCGTCGTGGACTACGAGCGTGT CCTGCGTGAGAGACTCTTGGATCTTGACCTCAACGTCCCTCCTCCGCCGGAGGTTGCTTGA
Protein sequence (LotjaGi3g1v0156000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPRDRATAHSAATPHNAAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAAKAYDTAAREFRGAKAKTNF PTASELVNSITTRSSPSHSSTLESSSPPPQPSPLDLTLTPPLSTGAFQVARPVMFFDAFARPETMLSIGRREMCGFDLPV ADFRLATAAAAAHSDSDSSSVVDYERVLRERLLDLDLNVPPPPEVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 206 | 206 | 1.7E-96 | – | |
| PANTHER | 1 | 206 | 206 | 1.7E-96 | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| Gene3D | 23 | 83 | 61 | 8.2E-31 | ||
| Pfam | 24 | 73 | 50 | 1.3E-13 | ||
| ProSiteProfiles | 24 | 81 | 58 | 24.25 | ||
| CDD | 24 | 83 | 60 | 1.45316E-30 | ||
| SMART | 24 | 87 | 64 | 4.4E-37 | ||
| SUPERFAMILY | 24 | 82 | 59 | 2.55E-22 | ||
| PRINTS | 25 | 36 | 12 | 1.5E-11 | ||
| PRINTS | 47 | 63 | 17 | 1.5E-11 | ||
| MobiDBLite | 85 | 105 | 21 | - | – | |
| MobiDBLite | 85 | 119 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0156000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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