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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0157000 |
Transcript ID | LotjaGi3g1v0157000.2 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DAG protein, chloroplastic; TAIR: AT3G15000.1 cobalt ion binding protein; Swiss-Prot: sp|Q9LKA5|MORF8_ARATH Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0S3SIF6|A0A0S3SIF6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0157000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21470084..21473094) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGATTTAATCAATTTATAAGAGGCCCGAATACACCACCTTGTGGAGTGCATTCTAGAAGCACAAGCACCACTTATAA GAAAACCCTAAACCCCTAATCCTCACTCCTTCATCTTTCTCTCATTTCTCATCTCCTCAAAGATGGCTACACAGATCTTC TCTCGCGTCCTTCCCAAAACCCGAACCCTAAACCTAGCTCCCTTCTTCACTCGCTCCCTCTCCACTTCAACCACCACCAC CACTCCCTCCCTCTCCGCCCTCTCTTTCCTCCGCCGCTACCGTCCCCTCTCCGCCGTATCCATCCCCACCTGCCGCCACC TCTTCCCCTCCGCCCGCTCCCTCTCCACCCGCGCCACCACCTCCTCCCTCAACGATCCTAACCCTAACTGGTCCAACCGT CCCCCGAAGGAAACCATTTTGCTCGATGGCTGCGACTTCGAGCACTGGCTCGTTGTCATGGAGAAGCCCGAAGGTGACCC AACTAGGGATGATATCATCGATGGATATATCAAAACATTGGCTCAGGTTGTCGGAAGGTAATCACCGCCGTAACTACTGC GTTTTGAATCTTAATGTTTGTTTTTACGAATGTTTTATCCAATTCGATGAGTTATTAGATGTCTATAGGTTTCTGTGATT TCTTTGAATTTGTTTGGTTATCTGATTTAGAATAATGGATTGAAATGAATTTAAATTTGTTAATATTTTAATTGTTGAAT GGAAAATTATTCATGTTCTATCTCGTTTCTCCCAAATTGGTGGGAAGAAAATGTAAGGGATTGAATGGAATGGGACAGAA TGTGATTCATTTTGTTTCATTACTTTTTGTTATAACATAATTCCTAATCAATCCAACGAGCTCAACTAATTATCATTCCA TTCTATTTTATACACTGCTTTCGGTATTTTGTGCTCTAGACTATAGAAAAAGGCTACTCACTATTAGCAAATGATTGCGT GTTCTGGGCTTATCGTCTACTGTGTGGTTGTCGTTCTGTAGTGAGCAAGAAGCGAGGATGAAGATATATTCTGTTTCGAC TAAGCACTACTTTGCATTTGGGGCGCTTGTGTCTGAAGAACTTTCTTATAAGTTAAAAGGTATACATGGTTCCACGCCTT TTTTTTTCTTTTGGCTTTTGTTTGTCTTTTTATAAATAGTAAGGGTTTCAAATTTTTATCTTTGAAATTGCAGAACTGCC CAAAGTTCGGTGGGTACTTCCTGATTCGTATTTGAATGTTAGGGAGAAAGATTATGGAGGTAATCTCTATTCTGTGGTCT GGTTTTTATTTATATCCATTCAGTATGCTACACTTAGTGTGTAGCATGTAGTATTTCGCCCTCTGGAAGGGCCACAACTG CATGCTTCGTGAACTCTTTTTTTATTTTGTTTACCAGGTGAGCCGTTTATAAACGGGGAAGCAGTTCCTTATGATCCCAA GTATCATGAAGAATGGGTTAGAAACAATGCTCGAGCAAATGAAAGGAACAGGCGCAATGACAGGCCTCGGAATAATGACA GGTCAAGAAACTTTGACAGGAGGAGGGAGAATGTGGTGAACAGGGATTATCAGAATAGGCCTCCACCAAATGCTGGTGGA CCTCCAAGCAATCAAGGTGGGTTTCCTCCCAACAATGCTGGTGGACCTCCAAGCAATCAAGGTGGATTCCCTCCCAACAA TGCAGGTGGATACCCTGCTTCTCCCCGTCCAGGCAACATGCCTGGCCCCCCTCCCAGCAACCCTGGCGGATACCCTCCTA ACAATCAAGCAGGTGGTTACCATCCTCAAAATCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGGATACCCTCCT AACAGCCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGTTTACCCTCCTAACAACCAAGGAGTGTATCCTCCAAA CCAGAATAACTATGCTGGCAGAACTCCTCCTAACGTGGGTGGTGCACCTCCTAACAGTGCTTATGGTCCAAATGCAGGGT ATCCTTCAAACCAGAATAACTATGCTGGCAACATGGAAGGGGTGCCACCAAACCAGAACGTGGGAGGGTATTCCCCAAAT GCAGGTTGGTCAAACAATGCTCCGACTAGGGACACTCCAAGCAGGGATTTCGGAGCAGCAGTTGGTGGTAACACATATAA TGGGTAAGATGATCTGCAGAGATTCTTGTGGCCAATGTAGATAATGAAGAATTATGTCAGACATTAATCTTAAGGAATTA GTATTTATTAATTTTGTTACTCTACTTCCTATTGAACCTGCGTGTCATGTATCTGAAGTTCAGAATTTTTGAAGGCTAGT TGTTTGTCAAACTTAGCCGGTCTAATATGCTATTTGATTGATGTTGCCTTGAAATCGTACTTAATTGCTTATAATAAACT TCCAAATTTCATAGTATTAAAAACATAAATTTGGCAGAGGTATGATGTGTCATCATCATTAACTTCCTAGAACATTCACA GCTCATTAGTTGTCAACTTTTCTTTTATGATTCTCGTTCCTTATTATTCTTAAGTTAGGTATTTTAAATCTTTCCACTTT CAGTTCTCAACGTATTCGTGTATTATTCAACATTTAGAGCCATCTATGCAATCATATTCTATTAGCCATTAGTAGCCCGT GCAATGCACGGGTTATTGATTTAATTTAGTGTTTATTGTGAGAGATAAAAGTATTAAGTCGGGACTCTACAATTATATTT ATTATACATGGTTGAGATTAAATGTCATTTAAAGTCATATTTAAAAATATCAGTTAAAAGGCTTAATAGACTGTTCCAAC AATTTGTAGAATTGCAGCAGGGAGATGTCCCAAATAAATGGCACTGTTCAAAATATGAGACAGGTTAGGAGAACAACAGA AACAATCACACGAATTAGTGTTAGGTTTTGTTAGACATCACCCAAATCCAATCCTCAAGAAGAAGAAAAACAATAGTCAG AATTTTGAATTTAAAACACGGTTGCGATCAAGGACTAAGGATCAAGGATAG
CDS sequence (LotjaGi3g1v0157000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACACAGATCTTCTCTCGCGTCCTTCCCAAAACCCGAACCCTAAACCTAGCTCCCTTCTTCACTCGCTCCCTCTC CACTTCAACCACCACCACCACTCCCTCCCTCTCCGCCCTCTCTTTCCTCCGCCGCTACCGTCCCCTCTCCGCCGTATCCA TCCCCACCTGCCGCCACCTCTTCCCCTCCGCCCGCTCCCTCTCCACCCGCGCCACCACCTCCTCCCTCAACGATCCTAAC CCTAACTGGTCCAACCGTCCCCCGAAGGAAACCATTTTGCTCGATGGCTGCGACTTCGAGCACTGGCTCGTTGTCATGGA GAAGCCCGAAGGTGACCCAACTAGGGATGATATCATCGATGGATATATCAAAACATTGGCTCAGGTTGTCGGAAGTGAGC AAGAAGCGAGGATGAAGATATATTCTGTTTCGACTAAGCACTACTTTGCATTTGGGGCGCTTGTGTCTGAAGAACTTTCT TATAAGTTAAAAGAACTGCCCAAAGTTCGGTGGGTACTTCCTGATTCGTATTTGAATGTTAGGGAGAAAGATTATGGAGG TGAGCCGTTTATAAACGGGGAAGCAGTTCCTTATGATCCCAAGTATCATGAAGAATGGGTTAGAAACAATGCTCGAGCAA ATGAAAGGAACAGGCGCAATGACAGGCCTCGGAATAATGACAGGTCAAGAAACTTTGACAGGAGGAGGGAGAATGTGGTG AACAGGGATTATCAGAATAGGCCTCCACCAAATGCTGGTGGACCTCCAAGCAATCAAGGTGGGTTTCCTCCCAACAATGC TGGTGGACCTCCAAGCAATCAAGGTGGATTCCCTCCCAACAATGCAGGTGGATACCCTGCTTCTCCCCGTCCAGGCAACA TGCCTGGCCCCCCTCCCAGCAACCCTGGCGGATACCCTCCTAACAATCAAGCAGGTGGTTACCATCCTCAAAATCAAGCA GGTGGATACCCTCCTAACAGCCAAGCAGGTGTTTACCCTCCTAACAACCAAGGAGTGTATCCTCCAAACCAGAATAACTA TGCTGGCAGAACTCCTCCTAACGTGGGTGGTGCACCTCCTAACAGTGCTTATGGTCCAAATGCAGGGTATCCTTCAAACC AGAATAACTATGCTGGCAACATGGAAGGGGTGCCACCAAACCAGAACGTGGGAGGGTATTCCCCAAATGCAGGTTGGTCA AACAATGCTCCGACTAGGGACACTCCAAGCAGGGATTTCGGAGCAGCAGTTGGTGGTAACACATATAATGGGTAA
Protein sequence (LotjaGi3g1v0157000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATQIFSRVLPKTRTLNLAPFFTRSLSTSTTTTTPSLSALSFLRRYRPLSAVSIPTCRHLFPSARSLSTRATTSSLNDPN PNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDDIIDGYIKTLAQVVGSEQEARMKIYSVSTKHYFAFGALVSEELS YKLKELPKVRWVLPDSYLNVREKDYGGEPFINGEAVPYDPKYHEEWVRNNARANERNRRNDRPRNNDRSRNFDRRRENVV NRDYQNRPPPNAGGPPSNQGGFPPNNAGGPPSNQGGFPPNNAGGYPASPRPGNMPGPPPSNPGGYPPNNQAGGYHPQNQA GGYPPNSQAGVYPPNNQGVYPPNQNNYAGRTPPNVGGAPPNSAYGPNAGYPSNQNNYAGNMEGVPPNQNVGGYSPNAGWS NNAPTRDTPSRDFGAAVGGNTYNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 24 | 389 | 366 | 8.0E-144 | – | |
PANTHER | 24 | 389 | 366 | 8.0E-144 | ||
MobiDBLite | 213 | 424 | 212 | - | – | |
MobiDBLite | 213 | 242 | 30 | - | – | |
MobiDBLite | 258 | 279 | 22 | - | – | |
MobiDBLite | 290 | 305 | 16 | - | – | |
MobiDBLite | 311 | 351 | 41 | - | – | |
MobiDBLite | 366 | 408 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Cytidine to uridine editing | The conversion of a cytosine residue to uridine in an RNA molecule by deamination. |
Expression pattern of LotjaGi3g1v0157000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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