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LotjaGi3g1v0157000.5

Overview

Field	Value
Gene ID	LotjaGi3g1v0157000
Transcript ID	LotjaGi3g1v0157000.5
Related isoforms 6	LotjaGi3g1v0157000.1 LotjaGi3g1v0157000.2 LotjaGi3g1v0157000.3 LotjaGi3g1v0157000.4 LotjaGi3g1v0157000.6 LotjaGi3g1v0157000.7
Lotus japonicus genome version	Gifu v1.2
Description	DAG protein, chloroplastic; TAIR: AT3G15000.1 cobalt ion binding protein; Swiss-Prot: sp\|Q9LKA5\|MORF8_ARATH Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|A0A0S3SIF6\|A0A0S3SIF6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0157000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:21470421..21473037) extracted from Lotus japonicus Gifu genome v1.2.

AGAAGCACAAGCACCACTTATAAGAAAACCCTAAACCCCTAATCCTCACTCCTTCATCTTTCTCTCATTTCTCATCTCCT CAAAGATGGCTACACAGATCTTCTCTCGCGTCCTTCCCAAAACCCGAACCCTAAACCTAGCTCCCTTCTTCACTCGCTCC CTCTCCACTTCAACCACCACCACCACTCCCTCCCTCTCCGCCCTCTCTTTCCTCCGCCGCTACCGTCCCCTCTCCGCCGT ATCCATCCCCACCTGCCGCCACCTCTTCCCCTCCGCCCGCTCCCTCTCCACCCGCGCCACCACCTCCTCCCTCAACGATC CTAACCCTAACTGGTCCAACCGTCCCCCGAAGGAAACCATTTTGCTCGATGGCTGCGACTTCGAGCACTGGCTCGTTGTC ATGGAGAAGCCCGAAGGTGACCCAACTAGGGATGATATCATCGATGGATATATCAAAACATTGGCTCAGGTTGTCGGAAG GTAATCACCGCCGTAACTACTGCGTTTTGAATCTTAATGTTTGTTTTTACGAATGTTTTATCCAATTCGATGAGTTATTA GATGTCTATAGGTTTCTGTGATTTCTTTGAATTTGTTTGGTTATCTGATTTAGAATAATGGATTGAAATGAATTTAAATT TGTTAATATTTTAATTGTTGAATGGAAAATTATTCATGTTCTATCTCGTTTCTCCCAAATTGGTGGGAAGAAAATGTAAG GGATTGAATGGAATGGGACAGAATGTGATTCATTTTGTTTCATTACTTTTTGTTATAACATAATTCCTAATCAATCCAAC GAGCTCAACTAATTATCATTCCATTCTATTTTATACACTGCTTTCGGTATTTTGTGCTCTAGACTATAGAAAAAGGCTAC TCACTATTAGCAAATGATTGCGTGTTCTGGGCTTATCGTCTACTGTGTGGTTGTCGTTCTGTAGTGAGCAAGAAGCGAGG ATGAAGATATATTCTGTTTCGACTAAGCACTACTTTGCATTTGGGGCGCTTGTGTCTGAAGAACTTTCTTATAAGTTAAA AGGTATACATGGTTCCACGCCTTTTTTTTTCTTTTGGCTTTTGTTTGTCTTTTTATAAATAGTAAGGGTTTCAAATTTTT ATCTTTGAAATTGCAGAACTGCCCAAAGTTCGGTGGGTACTTCCTGATTCGTATTTGAATGTTAGGGAGAAAGATTATGG AGGTAATCTCTATTCTGTGGTCTGGTTTTTATTTATATCCATTCAGTATGCTACACTTAGTGTGTAGCATGTAGTATTTC GCCCTCTGGAAGGGCCACAACTGCATGCTTCGTGAACTCTTTTTTTATTTTGTTTACCAGGTGAGCCGTTTATAAACGGG GAAGCAGTTCCTTATGATCCCAAGTATCATGAAGAATGGGTTAGAAACAATGCTCGAGCAAATGAAAGGAACAGGCGCAA TGACAGGCCTCGGAATAATGACAGGTCAAGAAACTTTGACAGGAGGAGGGAGAATGTGGTGAACAGGGATTATCAGAATA GGCCTCCACCAAATGCTGGTGGACCTCCAAGCAATCAAGGTGGGTTTCCTCCCAACAATGCTGGTGGACCTCCAAGCAAT CAAGGTGGATTCCCTCCCAACAATGCAGGTGGATACCCTGCTTCTCCCCGTCCAGGCAACATGCCTGGCCCCCCTCCCAG CAACCCTGGCGGATACCCTCCTAACAATCAAGCAGGTGGTTACCATCCTCAAAATCAAGCAGGTGGATACCCTCCTAACA GCCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGTTTACCCTCCTAAC AACCAAGGAGTGTATCCTCCAAACCAGAATAACTATGCTGGCAGAACTCCTCCTAACGTGGGTGGTGCACCTCCTAACAG TGCTTATGGTCCAAATGCAGGGTATCCTTCAAACCAGAATAACTATGCTGGCAACATGGAAGGGGTGCCACCAAACCAGA ACGTGGGAGGGTATTCCCCAAATGCAGGTTGGTCAAACAATGCTCCGACTAGGGACACTCCAAGCAGGGATTTCGGAGCA GCAGTTGGTGGTAACACATATAATGGGTAAGATGATCTGCAGAGATTCTTGTGGCCAATGTAGATAATGAAGAATTATGT CAGACATTAATCTTAAGGAATTAGTATTTATTAATTTTGTTACTCTACTTCCTATTGAACCTGCGTGTCATGTATCTGAA GTTCAGAATTTTTGAAGGCTAGTTGTTTGTCAAACTTAGCCGGTCTAATATGCTATTTGATTGATGTTGCCTTGAAATCG TACTTAATTGCTTATAATAAACTTCCAAATTTCATAGTATTAAAAACATAAATTTGGCAGAGGTATGATGTGTCATCATC ATTAACTTCCTAGAACATTCACAGCTCATTAGTTGTCAACTTTTCTTTTATGATTCTCGTTCCTTATTATTCTTAAGTTA GGTATTTTAAATCTTTCCACTTTCAGTTCTCAACGTATTCGTGTATTATTCAACATTTAGAGCCATCTATGCAATCATAT TCTATTAGCCATTAGTAGCCCGTGCAATGCACGGGTTATTGATTTAATTTAGTGTTT

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0157000.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACACAGATCTTCTCTCGCGTCCTTCCCAAAACCCGAACCCTAAACCTAGCTCCCTTCTTCACTCGCTCCCTCTC CACTTCAACCACCACCACCACTCCCTCCCTCTCCGCCCTCTCTTTCCTCCGCCGCTACCGTCCCCTCTCCGCCGTATCCA TCCCCACCTGCCGCCACCTCTTCCCCTCCGCCCGCTCCCTCTCCACCCGCGCCACCACCTCCTCCCTCAACGATCCTAAC CCTAACTGGTCCAACCGTCCCCCGAAGGAAACCATTTTGCTCGATGGCTGCGACTTCGAGCACTGGCTCGTTGTCATGGA GAAGCCCGAAGGTGACCCAACTAGGGATGATATCATCGATGGATATATCAAAACATTGGCTCAGGTTGTCGGAAGTGAGC AAGAAGCGAGGATGAAGATATATTCTGTTTCGACTAAGCACTACTTTGCATTTGGGGCGCTTGTGTCTGAAGAACTTTCT TATAAGTTAAAAGAACTGCCCAAAGTTCGGTGGGTACTTCCTGATTCGTATTTGAATGTTAGGGAGAAAGATTATGGAGG TGAGCCGTTTATAAACGGGGAAGCAGTTCCTTATGATCCCAAGTATCATGAAGAATGGGTTAGAAACAATGCTCGAGCAA ATGAAAGGAACAGGCGCAATGACAGGCCTCGGAATAATGACAGGTCAAGAAACTTTGACAGGAGGAGGGAGAATGTGGTG AACAGGGATTATCAGAATAGGCCTCCACCAAATGCTGGTGGACCTCCAAGCAATCAAGGTGGATTCCCTCCCAACAATGC AGGTGGATACCCTGCTTCTCCCCGTCCAGGCAACATGCCTGGCCCCCCTCCCAGCAACCCTGGCGGATACCCTCCTAACA ATCAAGCAGGTGGTTACCATCCTCAAAATCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGGATACCCTCCTAAC AGCCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGTTTACCCTCCTAACAACCAAGGAGTGTATCCTCCAAACCA GAATAACTATGCTGGCAGAACTCCTCCTAACGTGGGTGGTGCACCTCCTAACAGTGCTTATGGTCCAAATGCAGGGTATC CTTCAAACCAGAATAACTATGCTGGCAACATGGAAGGGGTGCCACCAAACCAGAACGTGGGAGGGTATTCCCCAAATGCA GGTTGGTCAAACAATGCTCCGACTAGGGACACTCCAAGCAGGGATTTCGGAGCAGCAGTTGGTGGTAACACATATAATGG GTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0157000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATQIFSRVLPKTRTLNLAPFFTRSLSTSTTTTTPSLSALSFLRRYRPLSAVSIPTCRHLFPSARSLSTRATTSSLNDPN PNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDDIIDGYIKTLAQVVGSEQEARMKIYSVSTKHYFAFGALVSEELS YKLKELPKVRWVLPDSYLNVREKDYGGEPFINGEAVPYDPKYHEEWVRNNARANERNRRNDRPRNNDRSRNFDRRRENVV NRDYQNRPPPNAGGPPSNQGGFPPNNAGGYPASPRPGNMPGPPPSNPGGYPPNNQAGGYHPQNQAGGYPPNSQAGGYPPN SQAGGYPPNSQAGVYPPNNQGVYPPNQNNYAGRTPPNVGGAPPNSAYGPNAGYPSNQNNYAGNMEGVPPNQNVGGYSPNA GWSNNAPTRDTPSRDFGAAVGGNTYNG

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31346:SF4 View details on PTHR31346:SF4 Search for proteins/transripts with this domain View external data on PTHR31346:SF4	24	395	372	7.6E-144	–
PANTHER	PTHR31346 View details on PTHR31346 Search for proteins/transripts with this domain View external data on PTHR31346	24	395	372	7.6E-144	IPR039206 Show description in modal box View details on IPR039206 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	213	242	30	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	213	427	215	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	275	290	16	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	296	354	59	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	369	411	43	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016554 View details of GO:0016554 AmiGO InterPro QuickGO	Biological process	Cytidine to uridine editing	The conversion of a cytosine residue to uridine in an RNA molecule by deamination.	Subterm of View details of GO:0016553

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0157000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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