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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0157000 |
Transcript ID | LotjaGi3g1v0157000.6 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DAG protein, chloroplastic; TAIR: AT3G15000.1 cobalt ion binding protein; Swiss-Prot: sp|Q9LKA5|MORF8_ARATH Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0S3SIF6|A0A0S3SIF6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0157000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21470421..21473037) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGCACAAGCACCACTTATAAGAAAACCCTAAACCCCTAATCCTCACTCCTTCATCTTTCTCTCATTTCTCATCTCCT CAAAGATGGCTACACAGATCTTCTCTCGCGTCCTTCCCAAAACCCGAACCCTAAACCTAGCTCCCTTCTTCACTCGCTCC CTCTCCACTTCAACCACCACCACCACTCCCTCCCTCTCCGCCCTCTCTTTCCTCCGCCGCTACCGTCCCCTCTCCGCCGT ATCCATCCCCACCTGCCGCCACCTCTTCCCCTCCGCCCGCTCCCTCTCCACCCGCGCCACCACCTCCTCCCTCAACGATC CTAACCCTAACTGGTCCAACCGTCCCCCGAAGGAAACCATTTTGCTCGATGGCTGCGACTTCGAGCACTGGCTCGTTGTC ATGGAGAAGCCCGAAGGTGACCCAACTAGGGATGATATCATCGATGGATATATCAAAACATTGGCTCAGGTTGTCGGAAG GTAATCACCGCCGTAACTACTGCGTTTTGAATCTTAATGTTTGTTTTTACGAATGTTTTATCCAATTCGATGAGTTATTA GATGTCTATAGGTTTCTGTGATTTCTTTGAATTTGTTTGGTTATCTGATTTAGAATAATGGATTGAAATGAATTTAAATT TGTTAATATTTTAATTGTTGAATGGAAAATTATTCATGTTCTATCTCGTTTCTCCCAAATTGGTGGGAAGAAAATGTAAG GGATTGAATGGAATGGGACAGAATGTGATTCATTTTGTTTCATTACTTTTTGTTATAACATAATTCCTAATCAATCCAAC GAGCTCAACTAATTATCATTCCATTCTATTTTATACACTGCTTTCGGTATTTTGTGCTCTAGACTATAGAAAAAGGCTAC TCACTATTAGCAAATGATTGCGTGTTCTGGGCTTATCGTCTACTGTGTGGTTGTCGTTCTGTAGTGAGCAAGAAGCGAGG ATGAAGATATATTCTGTTTCGACTAAGCACTACTTTGCATTTGGGGCGCTTGTGTCTGAAGAACTTTCTTATAAGTTAAA AGGTATACATGGTTCCACGCCTTTTTTTTTCTTTTGGCTTTTGTTTGTCTTTTTATAAATAGTAAGGGTTTCAAATTTTT ATCTTTGAAATTGCAGAACTGCCCAAAGTTCGGTGGGTACTTCCTGATTCGTATTTGAATGTTAGGGAGAAAGATTATGG AGGTAATCTCTATTCTGTGGTCTGGTTTTTATTTATATCCATTCAGTATGCTACACTTAGTGTGTAGCATGTAGTATTTC GCCCTCTGGAAGGGCCACAACTGCATGCTTCGTGAACTCTTTTTTTATTTTGTTTACCAGGTGAGCCGTTTATAAACGGG GAAGCAGTTCCTTATGATCCCAAGTATCATGAAGAATGGGTTAGAAACAATGCTCGAGCAAATGAAAGGAACAGGCGCAA TGACAGGCCTCGGAATAATGACAGGTCAAGAAACTTTGACAGGAGGAGGGAGAATGTGGTGAACAGGGATTATCAGAATA GGCCTCCACCAAATGCTGGTGGACCTCCAAGCAATCAAGGTGGGTTTCCTCCCAACAATGCTGGTGGACCTCCAAGCAAT CAAGGTGGATTCCCTCCCAACAATGCAGGTGGATACCCTGCTTCTCCCCGTCCAGGCAACATGCCTGGCCCCCCTCCCAG CAACCCTGGCGGATACCCTCCTAACAATCAAGCAGGTGGTTACCATCCTCAAAATCAAGCAGGTGGATACCCTCCTAACA GCCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGTTTACCCTCCTAAC AACCAAGGAGTGTATCCTCCAAACCAGAATAACTATGCTGGCAGAACTCCTCCTAACGTGGGTGGTGCACCTCCTAACAG TGCTTATGGTCCAAATGCAGGGTATCCTTCAAACCAGAATAACTATGCTGGCAACATGGAAGGGGTGCCACCAAACCAGA ACGTGGGAGGGTATTCCCCAAATGCAGGTTGGTCAAACAATGCTCCGACTAGGGACACTCCAAGCAGGGATTTCGGAGCA GCAGTTGGTGGTAACACATATAATGGGTAAGATGATCTGCAGAGATTCTTGTGGCCAATGTAGATAATGAAGAATTATGT CAGACATTAATCTTAAGGAATTAGTATTTATTAATTTTGTTACTCTACTTCCTATTGAACCTGCGTGTCATGTATCTGAA GTTCAGAATTTTTGAAGGCTAGTTGTTTGTCAAACTTAGCCGGTCTAATATGCTATTTGATTGATGTTGCCTTGAAATCG TACTTAATTGCTTATAATAAACTTCCAAATTTCATAGTATTAAAAACATAAATTTGGCAGAGGTATGATGTGTCATCATC ATTAACTTCCTAGAACATTCACAGCTCATTAGTTGTCAACTTTTCTTTTATGATTCTCGTTCCTTATTATTCTTAAGTTA GGTATTTTAAATCTTTCCACTTTCAGTTCTCAACGTATTCGTGTATTATTCAACATTTAGAGCCATCTATGCAATCATAT TCTATTAGCCATTAGTAGCCCGTGCAATGCACGGGTTATTGATTTAATTTAGTGTTT
CDS sequence (LotjaGi3g1v0157000.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACACAGATCTTCTCTCGCGTCCTTCCCAAAACCCGAACCCTAAACCTAGCTCCCTTCTTCACTCGCTCCCTCTC CACTTCAACCACCACCACCACTCCCTCCCTCTCCGCCCTCTCTTTCCTCCGCCGCTACCGTCCCCTCTCCGCCGTATCCA TCCCCACCTGCCGCCACCTCTTCCCCTCCGCCCGCTCCCTCTCCACCCGCGCCACCACCTCCTCCCTCAACGATCCTAAC CCTAACTGGTCCAACCGTCCCCCGAAGGAAACCATTTTGCTCGATGGCTGCGACTTCGAGCACTGGCTCGTTGTCATGGA GAAGCCCGAAGGTGACCCAACTAGGGATGATATCATCGATGGATATATCAAAACATTGGCTCAGGTTGTCGGAAGTGAGC AAGAAGCGAGGATGAAGATATATTCTGTTTCGACTAAGCACTACTTTGCATTTGGGGCGCTTGTGTCTGAAGAACTTTCT TATAAGTTAAAAGAACTGCCCAAAGTTCGGTGGGTACTTCCTGATTCGTATTTGAATGTTAGGGAGAAAGATTATGGAGG TGAGCCGTTTATAAACGGGGAAGCAGTTCCTTATGATCCCAAGTATCATGAAGAATGGGTTAGAAACAATGCTCGAGCAA ATGAAAGGAACAGGCGCAATGACAGGCCTCGGAATAATGACAGGTCAAGAAACTTTGACAGGAGGAGGGAGAATGTGGTG AACAGGGATTATCAGAATAGGCCTCCACCAAATGCTGGTGGACCTCCAAGCAATCAAGGTGGATTCCCTCCCAACAATGC AGGTGGATACCCTGCTTCTCCCCGTCCAGGCAACATGCCTGGCCCCCCTCCCAGCAACCCTGGCGGATACCCTCCTAACA ATCAAGCAGGTGGTTACCATCCTCAAAATCAAGCAGGTGGATACCCTCCTAACAGCCAAGCAGGTGTTTACCCTCCTAAC AACCAAGGAGTGTATCCTCCAAACCAGAATAACTATGCTGGCAGAACTCCTCCTAACGTGGGTGGTGCACCTCCTAACAG TGCTTATGGTCCAAATGCAGGGTATCCTTCAAACCAGAATAACTATGCTGGCAACATGGAAGGGGTGCCACCAAACCAGA ACGTGGGAGGGTATTCCCCAAATGCAGGTTGGTCAAACAATGCTCCGACTAGGGACACTCCAAGCAGGGATTTCGGAGCA GCAGTTGGTGGTAACACATATAATGGGTAA
Protein sequence (LotjaGi3g1v0157000.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATQIFSRVLPKTRTLNLAPFFTRSLSTSTTTTTPSLSALSFLRRYRPLSAVSIPTCRHLFPSARSLSTRATTSSLNDPN PNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDDIIDGYIKTLAQVVGSEQEARMKIYSVSTKHYFAFGALVSEELS YKLKELPKVRWVLPDSYLNVREKDYGGEPFINGEAVPYDPKYHEEWVRNNARANERNRRNDRPRNNDRSRNFDRRRENVV NRDYQNRPPPNAGGPPSNQGGFPPNNAGGYPASPRPGNMPGPPPSNPGGYPPNNQAGGYHPQNQAGGYPPNSQAGVYPPN NQGVYPPNQNNYAGRTPPNVGGAPPNSAYGPNAGYPSNQNNYAGNMEGVPPNQNVGGYSPNAGWSNNAPTRDTPSRDFGA AVGGNTYNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 24 | 374 | 351 | 2.0E-143 | – | |
PANTHER | 24 | 374 | 351 | 2.0E-143 | ||
MobiDBLite | 213 | 242 | 30 | - | – | |
MobiDBLite | 213 | 409 | 197 | - | – | |
MobiDBLite | 275 | 290 | 16 | - | – | |
MobiDBLite | 296 | 336 | 41 | - | – | |
MobiDBLite | 351 | 393 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Cytidine to uridine editing | The conversion of a cytosine residue to uridine in an RNA molecule by deamination. |
Expression pattern of LotjaGi3g1v0157000.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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