Transcript — View — Lotus Base

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LotjaGi3g1v0157400.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0157400
Transcript ID	LotjaGi3g1v0157400.1
Related isoforms 2	LotjaGi3g1v0157400.2 LotjaGi3g1v0157400.3
Lotus japonicus genome version	Gifu v1.2
Description	Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp\|Q9S7R3\|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr\|I3SLL3\|I3SLL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0157400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:21497788..21501755) extracted from Lotus japonicus Gifu genome v1.2.

AGAAAAAGAAGGGTAAAGCACTTTCATTGGTCCCATACCATGTCCCCTCAGTAGCCCATTGATGTGATCCCCCCAAATTT TTTAATTTTTATAAAATTAATTTCTTCCACTTCTATTCTATTGTCTTCTCTTCTCCCTCACCAAAAAAACATTCTCTTTC ATAAAAATGAATTTTCAGTAGTAGATATGTCCACCAAAGGGAAAGACATGGCAGAAGGATCATCTAGATCCTCTGCTTCC GGTGCGGGTGCTGATGCTGATGCTCGTGTTCGTGCTGTTGATGATGATCAACAACAACAAAAACAGTTGCCACTAAGCAG ATATGAGTCTCAGAAGAAGAGAGACTGGAACACTTTTGGACAGTACTTGAGGAATCAAAGGCCACCTGTGGCACTTTCAC AGTGCAATTCAAATCATGTGCTTGAATTTCTAAGGTACTTGGATCAGTTTGGGAAAACCAAAGTGCACTCACAAGGGTGT CTCTTCTTTGGACAAACGGAGCCACCTGGACCCTGCACCTGCCCTCTCAAACAAGCGTGGGGAAGCCTCGACGCGCTCAT CGGAAGGTTACGAGCTGCCTACGAAGAAAACGGAGGTTTGCCGGAGACTAATCCCTTCGCCAGCGGTTCCATTAGAGTCC ATCTACATGAGGTGAGGGACTTCCAAGCCAAAGCTAGAGGAATCCCTTATAAGAAGAAAAAGAAGAAGAGGAATGTTATC AATCACAATGGAGACTCCTCATCAAACTTACCTATGCCGCCGTGACATTAGTTTACTGGTAAATTTTTCTTACTGTTATC AATATTTCTGCAGCTTATTATAAAGGACATAATTAATTGTTGTAAGTTTTCTGGAAACTATTCATACTCGATCTCTCAGT ACGTAGTTGAATTTTCTACTCGTACAAGTAAAAGTTCATCAATCCTCTCAGCCTATAGTTCATTTTAAACCATATCAGAC ATTTCAGATCAAACCCTAATCCACGGGACTTCAATACTAACCCTATATTAATAATATGTGCTTGTCTAAATGACCAAATA ATGAGTTAAACCACTTTAGTTTTAGGTGAACTAATGATATTTAAGATAATGAAATGTCTTGCTATTTATCTTAAATATTA AATATTGTTGATCCATCTAGAGTTAGGATAATTTAACCCAAATTTTAATGGTTAATTTGTATAGAGAAGTCCTAATCATC GTGTGTTATAAAATTACATTTAGTTAAAGATGCATGGGTATGGATTAAAAAAACATTGAGTAGTAGCTACTTGTTAGAAA TTCTGCGGTTAAAGTAAATAATTTATTACCTAAGTAGATAATTGAAATTACATTAAATGAATTACATACAGTAATGGACC GTCTCATCTTTGTCGCTCTCACATGCAAGATGACAATGTAATCATGTTTCTACATCTCGAAACTATTCCTTTTCTGATGA TTTTATTTGCTCATATATATATTTGCGTTTCCGCAAGATCTTACTTGTTTCGGTATTCACACTATCTATTGTGCCTTCCA CAAACGATATAACTACTTCAATTTATATAAAATATAGAAGTTTTCAGATTTATTCATAAATAGATTTTTCTTGTTTGGAA AAATTATATATCTGATATGTTGGATACTTGGATTCATAAGGATTCAAGACATGTGAAATTTAAATGCTCATCTCTTTCAA GTTTCTTGTCTGTTGGTGTCGTGTTACAGAACCTAAATATCTCTTGTTTTCTCAAAGTTGTCTTACTTTAACATTTTTTT TATATCCCATTTCCAGTTGTTCTTTTTTCTTGAGTTTTTTTTCACTTTCATTTCATTTACATCTACACTTTTTATTTATC TCTCTGTTATCCCTTAATCGTATGGATAACTTATCTAGTTGAGTTAAGGATAATTGTTGTTGAAGGGTCAGTGTTCGAAT CTCGAGGATCGATTATGTTGACTAATTTACTAACAACTAACATTTACCTATAAAAAAATCATTATCTCTTATTTTCTCTC TCTTTAGTTCCTAGTGAAATGTAAATGAAACATAATTATTTTTCCTTGATCTTATATGTATATCTGGCATCCGTGTATGA ATTACAGACTTTCCACTACGTACGACACGAAAGGAAATTGCTTAATCTAACAGTGGGATGGCAACAATATACATATGTAG TGTTATCGCTTATAAAATAAATGTAGTGTTATCAACTTAATTATCTGCTATATATGCATTAATTTTAAATTTGGGCTCCT AGCTATTTCTGATTCATTTCAGATCCCGAAGTCCTAAGTTGCTAGGCCATTGGATTCAGCTGCAGTTCTGGAATTCTGAG TTATATCTAGTTTATCCTTGGGTCCATTTTGATCCTCCATTGTTTTTATGACTCAAAGGAGAGTATTTTGCTATTTGAAT GAGTTAGAAGGAAGTTGCCGAAGGATGTGATTTAACATATTGGGTTAAGTCCTTGTACTGTATTCAGTCACCTTTATGAA TTGAAGTGATTGAACTCATAAATAATATGGTTGAAATAACATTCATAAATATTCTCCTATGTAGGAGTATGTATTATATT GCATGGTATTCTTTGACCTTCACGAAAAGGAAATCAAAGTGATAGCAAGTAGAAACTAGGCTAAAAAACACTTTTGGCCC CTGATGTTTTAAGTTTGTGCAAATTCTGCCCCTACTCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGC ACCGTCTACCCCTCATGTTTTCAAACAGTGCACCGTCTACCCCTCCGTTTGAAAACATAAGGGGTAGAAACATCGACAAA AATAGATAGGGGCAGAATTTGCACAAACTTGAAACATCAGGGGCCAAAAATGCTTTTTAGCCTAGAAACTAAGATATCCA GTGTGTAAATTTGTATCTTTGTCAGCACATTTTTTAAGGCAGTTCTAATTAATCTGTATTTTGCCAATTCATATTTATTG TATGATTATAATGAATGTGTTTTGCTCAAATAGAACATAAATATACAGATCGTTTAAATGTAAATAAAAAAGCACTTATT GAAAATTATTTAGTACTTTTTTAAGGACAAAGTTAATATGTGAAGTTGATCAGAGTAGCACAAGAAATAGGGGTTTGAAT TATGTCATTCAAAACTTGGTTTTCCAAACGGTTGAAAGATATATCATCTTTGTTGAAATTGTTTGATGCAGCGGAAATGT ATAGCAGAGAAGTAGACGATGTACACCAACAATTTTACCTGGTTCACCCCAGAACGATAGGGCTACATCCAGTCTTTGGC ATCGCTAAGATTTCACTAAGCTCAAGCATTAAGAACTTCTCCATTCAAGTATTATTTGGACCCTACATCTTCAGACAAAC CAAGTATTCTTTGTCTCTGCCTCTTCAAGCAGACTAAGTATTCTTTGTCTCAGCTTCTTCATGCAGTTGAGTATTCTTTG GCCACTGCCTCTCCATGCATTGTTGAGTATTCTTTGGACCCTGCCTCTTCAGGCAAACCAAGTATTCTTTGTCTCTGCCT TTTTAGGCAAACTAAGTAATCTTTGTCCCCGCCTCTTCAGGCAGTTGAGTATTTTGTGGCCATTGCCTCTCCAAGCATTG TTGAGTATTCTTAATTTGGACCCCGCCTCTCCAAGCAAAATGAGTATTCGTAGGACCCATCCTTACTACGTATTATTAGG ACTCCTCCTTTACAACAAGTTTAAAAGACTTCTCCTCAAACGTTCTTCCTCAAGATCATTTCATCTATAAATAGTCTCTT CTAATAAGAGTGATGGTAGATACATTTAAGTTCATGAATCATAAAGTATTTTAGATGAGGTTTGACTCTGAGTGTATATT TTATGTTCTGTTCCATGAGAGAGTTGCAAAGGATTTGACTCTTAAGAAAATCTACTCTCCATATTGAAGCAGACGATGTT GATGTTCATCTCTGAGTGATGAGCATTGAGGCTTCTTTTCACGCTTAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0157400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCACCAAAGGGAAAGACATGGCAGAAGGATCATCTAGATCCTCTGCTTCCGGTGCGGGTGCTGATGCTGATGCTCG TGTTCGTGCTGTTGATGATGATCAACAACAACAAAAACAGTTGCCACTAAGCAGATATGAGTCTCAGAAGAAGAGAGACT GGAACACTTTTGGACAGTACTTGAGGAATCAAAGGCCACCTGTGGCACTTTCACAGTGCAATTCAAATCATGTGCTTGAA TTTCTAAGGTACTTGGATCAGTTTGGGAAAACCAAAGTGCACTCACAAGGGTGTCTCTTCTTTGGACAAACGGAGCCACC TGGACCCTGCACCTGCCCTCTCAAACAAGCGTGGGGAAGCCTCGACGCGCTCATCGGAAGGTTACGAGCTGCCTACGAAG AAAACGGAGGTTTGCCGGAGACTAATCCCTTCGCCAGCGGTTCCATTAGAGTCCATCTACATGAGGTGAGGGACTTCCAA GCCAAAGCTAGAGGAATCCCTTATAAGAAGAAAAAGAAGAAGAGGAATGTTATCAATCACAATGGAGACTCCTCATCAAA CTTACCTATGCCGCCGTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0157400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTKGKDMAEGSSRSSASGAGADADARVRAVDDDQQQQKQLPLSRYESQKKRDWNTFGQYLRNQRPPVALSQCNSNHVLE FLRYLDQFGKTKVHSQGCLFFGQTEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGLPETNPFASGSIRVHLHEVRDFQ AKARGIPYKKKKKKRNVINHNGDSSSNLPMPP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	50	50	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	19	19	-	–
PANTHER	PTHR31165:SF9 View details on PTHR31165:SF9 Search for proteins/transripts with this domain View external data on PTHR31165:SF9	3	186	184	3.9E-98	–
PANTHER	PTHR31165 View details on PTHR31165 Search for proteins/transripts with this domain View external data on PTHR31165	3	186	184	3.9E-98	IPR040222 Show description in modal box View details on IPR040222 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04852 View details on PF04852 Search for proteins/transripts with this domain View external data on PF04852	37	158	122	1.1E-62	IPR006936 Show description in modal box View details on IPR006936 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51697 View details on PS51697 Search for proteins/transripts with this domain View external data on PS51697	45	172	128	76.034	IPR006936 Show description in modal box View details on IPR006936 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	169	192	24	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0157400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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