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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0158000 |
| Transcript ID | LotjaGi3g1v0158000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NHL repeat protein; TAIR: AT3G14860.1 NHL domain-containing protein; Swiss-Prot: sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2; TrEMBL-Plants: tr|K7M265|K7M265_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0158000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21613182..21619201) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAATCACTTTAGAAAGAAAGAGTGAATTTGTGCGTGCAAGAGCGAAGGGGCATTACTGTGCCTTGAACGAAGCTAAC AACACAATCTAGTTATTCTAATTCATTCTTCTGCATTGGGAATTGAGTTTGGTGCCCCACCCCTTAGGCTTTGCACCCCA CTTTATTAAATACGGAATTTAAAGTTCTGTATCAATACGGAAAATACAATTCCGTATCTGTTTTAGTATATAATGAGTGG TTGAAAATGTGACACGCATGCTTAAATACAGTACGAAATTTTAAGTTCCGTATTCAATAGGGAGAATACGGAATTTTAAA TTCCGTATTTGATAAAGTGGGGGTGCCAAGCCCCATAGGTGGGGTGCCAAACCCAACTCCCTTCTGCATTCCTCCCCCGA TCATCCCGAAACAACTATGAGAACAGTTCATCTTCTCTTCTTCTTGTATGCCTTCATTGCACTTGCTGCCACTTTCTCTC TCCGTTTTCAAGCTCACGCTGCTCCTGCAGGTAAACCAAACCCACTCCCCCATTTCTCCAACTACTTCAATTTCCCATTT TTATTTTAATGGGTATGCTAAATTTTCAATCTTTCCTTTAATGCTGCTGAATGCCAAAATGGGCATGCTTTATTTATTTT CTTTTCTTTTGTCTAAACAGGTCCATTGATTAAGCATCTGTCTTCACTTATCAAATGGACAAGGTCTGCCTCCAAGACCC CACACTCAGGTGCTTTTTTCATTCTGCGTTACTGCTCAGTGCTGATAGCGTAGCGTAGCGCCAATCCCAAAAAATGCTAT TTCGAGTGCAAATAGCGAACAATAGCGGTGAATAGTGGAGTAGTGGTGAACCTCCAGGGCACTACGCTATAGCACGCTAT TAACAAACCTGGTTTACAGTTGTGGTTCAGATGTGTATGGAAATGTAATTAGTTGCTTCTTTCTTTTCAGATGAGAATGT TCTTCAGTTTGAGAATGGTTATGTAGTTGAGACTGTTGTCGAAGGAAACGAGATTGGTGTCATCCCTTATAGGATTCGTG TCTCCGAGGAAGATGGTGAACTCCTTTCTGTTGATGAAACTAATAGCAACGTCGTTCGAATTACCCTGCCATTGTCCCAA TGTATGGCTGCTCTTGTCCACTTTGAGTTTTAATGATTGTTATTACCAAATTTGACTAGTTAGGATTAGGTTCATATGAC AGTTTTGACATACATTCCTGGGACTTGGATGATGTCCCCATTTTCCCGTGATTCTTTCAAATTGGTTGCAGACAGATTGT AATAATGATGCTAAATATTAAAATAAAGAATCTGAATACTAAGCTTTATGGTATATTTGGTTCATTGGTTTCTGATCACA GCATTACCAAGTGAAACAGAATTTTGTATGACTTGAAAATCGTTTGATCCTCTTTCATTGGGTTTAATTTACTTCCTAAT TTCTTCTGTTTATCTCATTTTTGTTAGCGTAGATAGTAGAGGAAGATTGGTTGCTGGGTCATTTCAGGGCTACACTGGTC ATGTGGATGGAAAACCAAATGATGCTCGTTTTAATCATCCCAAAGGCATAGCCATGGATGATAAAGGAAATACTTACGTT GCTGACATTCAGAATATGGCTATCAGAAAGATTGGAGATGCTGGTATGTGTTAATAAAATTCCAAGAATTCAGGATCTAG ACTGGACTAACATAGTGTTTTAGTATCTGACAATATTCAGTTTGAACATACAATATACTCACAGGAATTCATTACAAAAA TGGTGCTAGTATACTGAGATGCAATTCTGAAATTCTTTTTAGGCTTAATTGCAACTTTGGTCCTCGACGTTTATCAATGC CACAATTTTGGTCCCTCACCTAATTTAATTACGTGGATGGTCCCTGACGTTGTAGGTCGTGTGCAACGTTAGTCCTACCT TTTATTTCTTAATGGAGGAGGCTTACGTGGACGTCCAGTTGGAGAGAGAAATGAGGTATGAGGAGAGAGGGAAGCACGTG AGTATCACGTGACCCTTATCTGAACATATTATACCCAAACCCCTGACCTCCCTGGAACGAAGAAGGTAACGCGATTTAGA TCCCTAGGGTTTCAGATTTGGGTATAATGGGTTCATATAAGGTTCACGTGAGTTCACGTGATACTCACGTGCTTCCCTCT CTCCTCAGATCTCATTTTTCTCTCCAACTAGACGTCCACGTAAGCCTCCTCCATTAAGAAATAAACGGTAGGACTAACGT TGTACACAACCTACAACGTCGGGGACCATCCATGTAATTAAATTAGGTGGGGGACCAAAATCGTGACATTGGTAAACGTC GGGGACCAAAGTTGTAATTAAGCCTTCTTTTTACTTGAAGTTTAGAATCTTGCTAAAGATGTTCAGGAGAAACCCACAGT CCAATACAAGAATGATGGTTGATCCCTTTATTCAAACACTAAATCCAGTGGGTTTTGGCATGACCTGCATGCATAACATA GGACCAATAATTCCTTGCCTTTCTTTGAACATGTGACTTCTGCCTCTGCACAGTTATAGACATATTAAATCCTAATGTAT TGGGGAGAATGTTCAGTGAGAATGGAAAAAAGGATGTTGTTACTGAACTGTGTAAGTATTTTTAGGTGTGACAACCATTG CTGGAGGAAAGTCAAATGTTGCAGGCTATAGGGACGGTCCTAGTGAGGATGCTAAGTTCTCCAATGATTTTGATGTGGTA TATGTTCGGCCCACCTGTTCTTTGTTGGTTATTGACAGAGGAAATGCTGCTCTGCGAAAAATTTCTCTTGACCAGGAGGA CTGTGATTATCAATCTAGTTCAATTTCCAGTACAGGTTTAAATTCTGATCTTTTGTTTGATATGTTTCATTATTTAATTC AATATAATGGTTACTGTTGCTATAAGATGATAATAAGTAATAACCTCTTGCTTTTTCCTTTAGCTTCCATGCATGTTACA AGATGAGAAAGCTTTGAGTGATTTATGCTTCTGTTAGGATTTGGAAGTCCTAACAGCAGCCTCAAAATAAAAAGAGAAAG CAGATTTTTTTTTGGTATTTTTTTGAATATATAAACTGGAAAATAATGAGACGAGATAAAAAGAGAGGACTATGAAAACA GTCCTAATGGATTCCAAAGAAAGAGAACCTTCTTTACAAGGGTGAAACCCTTCCAAGGGAAAATCCCTTTACAAACTCAA TTACTCACTTCATACTCTAACCTAAGGAGAGTACTTCTATTTATAAAAACTAACCCTACTAAAGAGCCTTAACCACTAAA AAATAAAGATGGACTTAACCACTAAGAAATAAAGATAAAACTGGACTATAATTGAAGTAAAAGGACAGAATCTTCATTGG TAGAACTGACAATCTCTGAATCTGTATCAAGATGATTTTGAGAACAATTTGAGAGCAACATATAGAACAAAATGTACAAA CTCTCATGGCACAAGTATTCAAGGGACCTGGGCTCTCCCTTACAATACTTTCTTCACTGACTAGCTTTTTTTTTTCCTTT TTTGGAGGGGGGTTTGCTTTCTGATAAGAACCTTGGGAGAACAACACCACAAAATCTAGCTGTTGTAGTTGCAGAGCCCA AGGCCTTATAAACCCCACATTAGAATCTCATACTTCCAATGTGGGACTCAAATCCCATACCTTACAATTGGGTCCTAACA CTTTCCCTTTGTAATTACTATTGTTTCTTACTAACTACAGTTGATACTTGGGGATCTAATAGGTAGCTTTATTGGATGCA TCTTGATTTGAAATGGTATCTTTATCCGGTATGATCCCATCTCCAAATTTTAGGGAGCAGCTTTTCTTCTAATAGACTAG ACAGTAGACGCAAATACATTATGTCACTAAATGTGGATTTAGTTTATCCAACTGATGTCTGCTCAGTCCTGGTCTTAACT CCCTTGTCCATAGTACATAAGTAGAATGGAAAATGGCAGTCCGATAAGTGCTATTAACTTATATGTGTCGGTGTTGTATT TTCTGTTCAGTAGAAATGAAACAGTGGAGAGTATGTAAAAGTGAATACAGTGTTTATGTAACTTGATAGGGCTCAAAATG ATTTATGGGTCCAGAGAGGAGAACAGGCTCAGCAAGTGTCACATGGGCCCAAGATATGGAGGGTCTATACCAGAGTCCAG AAGAATAAGAGAGCAAGTTACGTAGTAATGTTGAGCTGGCAGCGAGAGACTATATGGAGAAGTTAGTTACGGGGAATGGG TGTCTGAGTCCATATAGGGGCTGGTTAACATGATAGAGGGGTATCGAATAGAATATTTCAGTTACTAAGAGTAGAGAGCT AGCTCTCTGTAGGAGCTTAGTTCTAGGCAGTGTTTTGTGCTACTGTAATTTCATCTTTTCAATAATATACAGAACCGTTT TCCTTTCCTTTTAGCCTCTATATTGTTATTTTAATCTCATTGTTGGATTTGTTTGTTTCATAACTGAAGTCTATTGTTTG TTTTTCTGCAGATATCCTTACAGTTATTGGTGCTGTTATGGTAGGATATGCTACATGCATGCTTCAGCAGGGATTCGGAT TGCCTTTCTTCTCAAAAACAGTATGTCTGTTTAGTTCAATAGGGTTTGTAGATATAGCAATTTCAGAATCGTATAGCATT TCGTTTGGTTGCTTTATAATGTTCCTTTCTATTATGTAAGAAACTTGTGACAGCATCATCTATTCTTTTAAGAAAAAAGG ATTCAAAATCATGATAAGAGCTCAGGTATAGGTAATTTAAAAAATAGATTGTGTCCCTTGCTTGCATGTCAGTAAGGTAA GGAATTATACGTCACTCTGATTGATGTTAGAAGATTTGGTTAAAAAGGGATGGACTCTTGATTGTAACATTAAGACAAAA AAATTATACCAAAATTTCAAGATCATTTTAAAAAAAATATTTCACTGTTGCTGATCGGCTAATTATACTTAAAAATGCTG CAGAAACCTTCAGCGAGTGAGTTTAAAGAGCAAGTAAGCAGTGAGAAACACATGCCATTCCTGGAAAGCAGTAAAGAGGA GCCAGGATGGCCGTCTTTTGGACAGCTTATCGTTGATCTTTCTAAGCTCTCTCTTGAAGCACTGGCTAGAGCGTTCGCTC AAGTCATACCCTCACACTTGATCTCTGGAAGCCCCAAGAGAGGCCTAACACCACTAAATGATCGTTTTCTGATGCCGGAA GATCAAGTGTTGGTGAATAGGAAAACCACTCCTGCTCCTCTTATCGAGAATAGGCATGTGCCACAGGTCCATCACACTCC ACGCACAGCAGAGAAATATTCAGAAATAAAGCCTCCAAAGATAAAATCAAGCAGTTTCAAGGACCCCTCTCTGTCGAGTA AGCACCGTTCTTCAAAACGACCTGAGTTCTACGGATCTACTGAGATTCCACCATATACTAAATCTAAGAGCCAGAAAGAA AGGCCAAGACACCGGCAACGGGAAAAGAGCGGAGAAGTTGTCTTTGGAGCAGAGCCTAAACCTGTTGAGACGAAGGCTGT TGATCAGAGCGCTACAAAGTTTGACCATTACAATATGAGGGCTAAGTATGTATCTGGGGAGTCCTATCGGTTCAACTCGC AGTAACAAGTTTTGCATGATTTAATGTTCTTCTCAATTATATTGAATGTCTGCAAGTGCATCTGTTTGAAGTTGGTCTGT AATTGAATCTGTATTATATGCAAAAAATCTGTGCTTAGTACAGGTGGGAAGATAAAAAACAATCTAGATGTTTGCTATTT GCACCAACCAGTCTATCTCATTTAGACTTTAGGGGGGAGTACATCTCCTTTTGTGAGCTCAATTAACCAATGCATCTTCA TTTATATTTCTATTAACATTGGGTATGTTTGCCTTCATATTAATCTCCTCCAATGAGTACATCATACCTCATATCCATAA CCACAATAAAAATAGGGAATCGTTAATCAAACCTCCTGACATCTATTCAAACCACCATTATATTCCTAAAATCTGAAGAG AACCTTAAAAGAAATTTCAC
CDS sequence (LotjaGi3g1v0158000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACAGTTCATCTTCTCTTCTTCTTGTATGCCTTCATTGCACTTGCTGCCACTTTCTCTCTCCGTTTTCAAGCTCA CGCTGCTCCTGCAGGTCCATTGATTAAGCATCTGTCTTCACTTATCAAATGGACAAGGTCTGCCTCCAAGACCCCACACT CAGATGAGAATGTTCTTCAGTTTGAGAATGGTTATGTAGTTGAGACTGTTGTCGAAGGAAACGAGATTGGTGTCATCCCT TATAGGATTCGTGTCTCCGAGGAAGATGGTGAACTCCTTTCTGTTGATGAAACTAATAGCAACGTCGTTCGAATTACCCT GCCATTGTCCCAATATAGTAGAGGAAGATTGGTTGCTGGGTCATTTCAGGGCTACACTGGTCATGTGGATGGAAAACCAA ATGATGCTCGTTTTAATCATCCCAAAGGCATAGCCATGGATGATAAAGGAAATACTTACGTTGCTGACATTCAGAATATG GCTATCAGAAAGATTGGAGATGCTGGTGTGACAACCATTGCTGGAGGAAAGTCAAATGTTGCAGGCTATAGGGACGGTCC TAGTGAGGATGCTAAGTTCTCCAATGATTTTGATGTGGTATATGTTCGGCCCACCTGTTCTTTGTTGGTTATTGACAGAG GAAATGCTGCTCTGCGAAAAATTTCTCTTGACCAGGAGGACTGTGATTATCAATCTAGTTCAATTTCCAGTACAGATATC CTTACAGTTATTGGTGCTGTTATGGTAGGATATGCTACATGCATGCTTCAGCAGGGATTCGGATTGCCTTTCTTCTCAAA AACAAAACCTTCAGCGAGTGAGTTTAAAGAGCAAGTAAGCAGTGAGAAACACATGCCATTCCTGGAAAGCAGTAAAGAGG AGCCAGGATGGCCGTCTTTTGGACAGCTTATCGTTGATCTTTCTAAGCTCTCTCTTGAAGCACTGGCTAGAGCGTTCGCT CAAGTCATACCCTCACACTTGATCTCTGGAAGCCCCAAGAGAGGCCTAACACCACTAAATGATCGTTTTCTGATGCCGGA AGATCAAGTGTTGGTGAATAGGAAAACCACTCCTGCTCCTCTTATCGAGAATAGGCATGTGCCACAGGTCCATCACACTC CACGCACAGCAGAGAAATATTCAGAAATAAAGCCTCCAAAGATAAAATCAAGCAGTTTCAAGGACCCCTCTCTGTCGAGT AAGCACCGTTCTTCAAAACGACCTGAGTTCTACGGATCTACTGAGATTCCACCATATACTAAATCTAAGAGCCAGAAAGA AAGGCCAAGACACCGGCAACGGGAAAAGAGCGGAGAAGTTGTCTTTGGAGCAGAGCCTAAACCTGTTGAGACGAAGGCTG TTGATCAGAGCGCTACAAAGTTTGACCATTACAATATGAGGGCTAAGTATGTATCTGGGGAGTCCTATCGGTTCAACTCG CAGTAA
Protein sequence (LotjaGi3g1v0158000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTVHLLFFLYAFIALAATFSLRFQAHAAPAGPLIKHLSSLIKWTRSASKTPHSDENVLQFENGYVVETVVEGNEIGVIP YRIRVSEEDGELLSVDETNSNVVRITLPLSQYSRGRLVAGSFQGYTGHVDGKPNDARFNHPKGIAMDDKGNTYVADIQNM AIRKIGDAGVTTIAGGKSNVAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRKISLDQEDCDYQSSSISSTDI LTVIGAVMVGYATCMLQQGFGLPFFSKTKPSASEFKEQVSSEKHMPFLESSKEEPGWPSFGQLIVDLSKLSLEALARAFA QVIPSHLISGSPKRGLTPLNDRFLMPEDQVLVNRKTTPAPLIENRHVPQVHHTPRTAEKYSEIKPPKIKSSSFKDPSLSS KHRSSKRPEFYGSTEIPPYTKSKSQKERPRHRQREKSGEVVFGAEPKPVETKAVDQSATKFDHYNMRAKYVSGESYRFNS Q
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 478 | 478 | 9.4E-225 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 478 | 478 | 9.4E-225 | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 17 | 28 | 12 | - | – | |
| Phobius | 29 | 481 | 453 | - | – | |
| Gene3D | 43 | 223 | 181 | 7.2E-30 | ||
| SUPERFAMILY | 76 | 224 | 149 | 1.49E-6 | – | |
| MobiDBLite | 357 | 456 | 100 | - | – | |
| MobiDBLite | 368 | 389 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0158000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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