Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0159500 |
| Transcript ID | LotjaGi3g1v0159500.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT5G60450.2 auxin response factor 4; Swiss-Prot: sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4; TrEMBL-Plants: tr|D3GBU8|D3GBU8_LOTJA Auxin response factor; Found in the gene: LotjaGi3g1v0159500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21756533..21762870) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGTTCTGTACTGTCTTAGCCTGTCCCCCCACCCAACACACACACACACACACTCTCTCTCTCTCTAACACTTCAACC CCAAAAGCCACTACCACTTTGGCTTTTGTTTCTGTGCTTCCTAAGCATATGTCTATGTCTCCTCCCTCAGCTCCCTCTTC TCACTACTACCTGCAAATGGAGGAAGAATCAAACTTTGAATTTCTTGATATTATTTGATGCACTTTTCTTAAACCATGTT TTGTTTTCTGTTCAACCCTCCTCTGTTTTCACCTTTGTGGTGGACTGGTGTCCCTTCCTTTTTCATGATTTGACCTCATT TCCATTTTGTTACAGTCTCAGCTTTCTCAGTTTCCTCTTTTTAAAATCCACTTGATTGCACTGCACTCTCTTGAGTCTCT TCCTTTCTCCTTTACCTTCTTTTTCCATTTTTTTAATGTTCTATTTGGTTTCCATTTGAATCACATAGCAAGTAACTAAC TACACTTGGAGTGTTCATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACT GTGAGAATTGTGCTTCTTGTGTTTGTTCTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCT TGTGCTGGCCCCCTTACTTCCCTACCAAAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGC ATCTTTCTCTCCCTTTTCTCCATTGGATGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTC AACTACTTGTGAGTACTTAAACTCATTGAACTAAGCTCTTAGATTGAATTGTATCTGCTTAATTCAACTCCTTTTTGTTG CTTTTGTTATTTGGTTTAGGCTTAATTGTCTTCTTTTTTGTTTTTATGTTTTTTCTCCATCAACAGGCTAATAAGGAGAA TGATGAGGTTTACACCCAAGTTACTTTGCTTCCCCAGGCAGAGGTTGGATTTTCATTTTGTATAGTTATTTCTGTTTTGA TGCATCTTCTTTAGTTAATTTTGGTTTGAGTTTCTTCTTGGGAAATAGACAAGTAAAGAATTTGGAACCCTGTTGTTTTG AAATGTTATATGACGCAACAGCAAGATAAAGTAACTCTAATAGCATGTTTGGATTAGCTCATATTTTCTCAATAATCAAT TATGGCATCCAGAAGCTACTCACAGAAGCTTTTCTCTATAATTGGTTTTGGCTTCAGAATCAATTGTAGAATGATTTCCA AACATGCACTAAATGTTGGGTTGTCTTCAGTTAGAAGGAATATATTTGGAGGGCAAAGAGCTTGAGGGAGTGGGAGAAGA TGTAGAGGGAAATGGAAAAACACCTGCAAAATCAACCCCTCATATGTTCTGCAAAACACTTACTGCCTCTGATACCAGCA CTCATGGGGGCTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTTTGGTATGACACCAAGATCAAGTTTCC AAGCATAATTTCTAACATAAATATTCAGAATTTTTAAAGGTGATCAATTCTGTTTATTTTCACTGCAGGATTATAAGCAG CAAAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAGGTAACCA TAACAGAGAAACTCTGTCTGGTTTGGCTTCATATATTAACTATAAGTGATACAGGAAGTCCATGTGGTCATTTTTGAAGG TCAGCCGAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTTC TCTTTCTAAGGTAGGTCTGTGCGCGCGCGCGTGTGTGTGTGGAACTGGGGTTTTTTTTACAAATGGCATTGATTTCTATA AGTTTGATTTTTTTTTTTAATCTTCTTACAATTAATATCATACAGCCATTTTTACAACAAAGTAATATCAGCTGCCAAAA AAATATTTGGATTTGATCAATCTTGTCCTTTTATTGGAACGGTCATGTATCATTTTGTTGATTATTCATAATAAGAAGCT TCTTGTCATGGAGATGGTAAGGTACCAAACTAGCAAAAGGAATATCTTGTTTTAGAACATATCTCTAGACCTCTGATTTC TTTTGTACAAGAGAAACTAGAACTTGTCTTGACAAACTTTAAAAGCAAGAGAGTTGAGTGATAGTAAATAAATAATATAT GAATGCCAACTTGAGATTCTACATATTAGTCTCAGAGGAAGAGGAATCTTTCATGCTACTAACTTTTAGATCCCTTACTA CTTATGAATCTCTTTGTAGAGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTT CCTGAATCAATTGTTGGTAACCAGAGCTGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCAT GTTTCATGTTTTCTACAGTCCAAGGTGATCATTTTTTTTTCACATGTATAGTTCTCTAACTATTTAATCTTTAATTTTCA ATTTGTCATGGCTGCTATAGATGAAATTATTTTAATGTATGCCATGATGGCAGTACGGTACTACCGTGGCATTGGTGAAT AAATCAAGGAAGATCTCAAGTATTGTTTTTAGTTTTTACAATCCCTGAGACAGCTTATCTGTCAGTTTCTAATAAACTCT TGGTCACGGAACTTGATTAGATCTTGCATAATGAGAGTCATAGTATTAATTAAGTTGACATTGTAGGTTTAGAGAACAAA TGAAGCACTTGGATAACTTTTGAAGTGGTTGTTTACCCTGTATCAACATCTGTTCTGACTTATCACATAGAAGTGCTAGA TAGATAAAATAAAGGGTTATTTTAGCCCACATGTTATTTAGCCCATATGAACCAAGCCACAAATTTGTGACATTTTAATT TGGTATAATGCAGAGCGAGTCATGCAGATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTGACC GTTGGAACAAGATTCAAAATGAAATTTGACATGGATGAATCTCCAGAAAGAAGGTCGACTACAGCAGTAACTATAAATCG GTAACCATTGTCTTCCATGAACCCAAAAGAATCTTCTGAGGAATATGACACACTCTTCCTGTCTTGCAGGTGTAGTAGTG GTATAGTCACTGGAATGAGTGATTTGGATCCCTACAAATGGCCCAAGTCAAAATGGAGGTGCTTAATGGTACGTTTTATA TTTTTCTTTATGCACAATTCAGTATGTTTTGACAATATTATCCATTTAGCATTTTGAGCATATGATTTTTGTTAATGAAG TACTGAACAAATGGTGATATCTCGATCAACTTAAGCTTGCTTTGATATACAACAGGTTAGATGGGATGAGATTGTTGAAA CTAATCATCAAGATAGAGTATCTCCATGGGAGGTTGATCCTTCTGCATCTCTCTCTCCCTTGAGCATTCAAGCTTCACGA AGGCTGAAGAAACCGCGCACAGATCTGGAAGCTGACTCACCCAATCACCTAATTACTGGTATGAATAATGAATCCTAATA CCAAGATAGCCAAAGTAGCATAAATCAGTTATTTCTTACTCAATGCATCCTAATAGTCCTCTCTTCTTTATTCATGTTTT TGGCTTCTTGATTGGAGGGTCGGCAACAGGAGGCAGTGGGTTTATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCT TGCAAGGTCAAGAAAATACAAGTTTTATGTCACTATATTATGGATGTGACACTGTAACTAAGAAACCAGAATTTGATATC AAATCTCCAAGTCAACCTAATCTTGCATCAACTGGAGTAAGAAAGATTACTGCTGCTGCTGAGGTTATGAGGGTTCACCC TTTTAATTACGCAGGCTTCACGGAAACTAACAGGCTTCCGAGGGTCTTGCAAGGTCAAGAAATATTTCCACTGAGTTCCC TGACTGGTAAGGTTGATTTGAGCCTTGGTGGTTGGGGAAACCCCCATGTCAGTTGCACAAATTACAACCTGCATCAGGCA ACCAAACCTAGCTTTCACTCTTTAAGACCAGAACTTCTTCAAACTGCTTATTTTCCTTTTGGTGATATTCACAAAGCTGG TCAAGGATTCAGCATGTTGTGCTCCAAACCCACCAATTTCCAACGAGAGAATGTCGCGTTTAACGCTCCTTCCACTCAGT CAGGGATCATGAGAAGTGAAGTTGGACTTTCAGACCTGACCATCCCAAATGAGCAGAAGCTACAGGATAATATTTCTGGA ACTGCTGCTTCTTTAGGGGCAAACATAAGGATTCTAAATGATGACAATTTCGATGGGAAGGTAAACGCTTGTAAACTATT CGGATTTCCCTTGTCTGGGGAAAGTACCTCCCAAAATTTACAGAACACTGCTAAAAGAAGTTGCACCAAGGTGAGCGATG ATAGCAACAGAGTTATATTGTGATATGACTTTTTATCTTCCTTTGATGATTTGCATATCCATGTAACATAACACTGAATG AAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGA ACTAGAGAGGCTATTTAGCATGGAAGGCCTTCTAAGAGAACCTGATAAGGGATGGAGAGTCCTCTACACTGACCGTGAAA ATGACATCATGGTTGTGGGAGATGATCCATGGCAGTAAGTATTTGACTCAAATATTTCTTTATTCTAATACTGCTTTGCC ATCTTTTAGGAATTTGGCTTACCTACAGTTGGATAGTTCCTAAATTCATCCAGTCAACGAATCTAAGCCATCCAATTTCG AAGATATCTCTACCATCTGACTTTGGTGAAAAATATGAGCCGATCGATCTTGATCTTATGGTTCAAATTTCATTTATGTG TGTGAATGTAGGAGATCGGTGACTGCAGAGAATCCATCACTTCACTGCACTCATTTATTGACTGAAAAATGCATTTTTCC TGTTTTCTGCAGTGAATTCTGCAATGTGGTATCCAAGATTCATATATATACACAAGAAGAAGTGGAGAAGATGACAATCG GTATGATGAGTGACGATACTCAGAGCAGTTTGGAACAGGCACCACTGATTATGGAGACTTCTAAGTCCTCCTCAGTTTGT CAGCCAGATTCTTCTCCGACGGTAGTTAGAATCTAGTTTCAAGGTTGTATTTAGTATTCTTATGTTGGCTCTGTTGCTGT TTTATGCAATATAATCAAATACTGAACTACCTTGGAATTTGTATGGAGCAAAATAACATCGTTAGGAAGGATAATGGACA ATGTGCCATCTGAAGTTGCTCAATAATGGTGTCATTACCGCTTGAGAGTTACATTCTGAGTAGAAATGGTGTCCAAATCC TAGTTACCTAATGACACAATTTCTTTTCAAAGTGAGGCACGGTGCTTCACAAAAAATATTCGCTGAAATTCTGAAAATAC CCCTTTCAAATTTTATTATTCCCAACATACCTTATCCTCTCATCTAAGCCTTGCCACCCAGCTACCACCAACTCCGGCTG GCCACCACCACCGTCGCTCAACAAAACCAGATCTCCTCCATAGTAGATCCTTAATCACCAAAATTTTCAGATCTAGGATT TGGATGTTGTTATTATTTTTGTTGCTGGTCATTCTCAATGCCCACTATTTCCTTTTTTCATTCCCTTATATATTATATTT GATTTGGGGCTAATTCAATAATTAAACAAAAGAAGTAATCTCTGCATATGAAAATCTGAACTTTATCTGATTCCAGCCAT TAAATTGCATATGTAAATTAAAGTCAGACTTTTAAGTATTTTAATAACTGTTATGTGGTTCTTGATCCTTATTCAGATCT ATTTCCTCATTATCTCGTTCTCGTACAGGAGGAAAGAGGTCTTGGACGTGAGTTTTGCGGAGCAGGAGCTATAGTCTGCG GCGGTGAGCAACGCAAACCTCCCCTGCCCAGATCCTCTTCCGTAAGTCCCACGAACCAGATCGAAACAAAAGCACTATAT TGACACTCAGTTTGTGTTTAACTGATGTTGAAGTGAGAGATTTGGTGAGGAGGGAGCGAGAAGGATTAAACACACAAGAG TGAGAGTGAATGGGTTGTTGATGACGATGGTGGATTGAAATAGATTAAGGATATTTTAGTAAAGCTTTGAAATAATTAGG CAATTGCCTAAGGCCCCAAACTTATTTAAGGCCCCAATTTATTTTTACCTATATAATATATTTTATTAAGACTTAAAAAA GATAATGGAACAGTGAAA
CDS sequence (LotjaGi3g1v0159500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACTGTGAGAATTGTGCTTC TTGTGTTTGTTCTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCCCTTA CTTCCCTACCAAAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGCATCTTTCTCTCCCTTT TCTCCATTGGATGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTCAACTACTTGCTAATAA GGAGAATGATGAGGTTTACACCCAAGTTACTTTGCTTCCCCAGGCAGAGTTAGAAGGAATATATTTGGAGGGCAAAGAGC TTGAGGGAGTGGGAGAAGATGTAGAGGGAAATGGAAAAACACCTGCAAAATCAACCCCTCATATGTTCTGCAAAACACTT ACTGCCTCTGATACCAGCACTCATGGGGGCTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTTTGGATTA TAAGCAGCAAAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAG GTCAGCCGAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTT CTCTTTCTAAGAGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATC AATTGTTGGTAACCAGAGCTGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCATGTTTCATG TTTTCTACAGTCCAAGAGCGAGTCATGCAGATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTG ACCGTTGGAACAAGATTCAAAATGAAATTTGACATGGATGAATCTCCAGAAAGAAGGTCGACTACAGCAGTAACTATAAA TCGGTAA
Protein sequence (LotjaGi3g1v0159500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIDLNDAVTEVDKNAYCNGDCENCASCVCSGSSSAIVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPF SPLDVPTYDLHPQIFCKVANVQLLANKENDEVYTQVTLLPQAELEGIYLEGKELEGVGEDVEGNGKTPAKSTPHMFCKTL TASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKKLVSGDAV LFLRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISARSMFHVFYSPRASHADFVVPYHKYVRSIKNPV TVGTRFKMKFDMDESPERRSTTAVTINR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 344 | 324 | 6.5E-202 | – | |
| PANTHER | 21 | 344 | 324 | 6.5E-202 | – | |
| SUPERFAMILY | 148 | 267 | 120 | 4.97E-45 | ||
| Gene3D | 153 | 258 | 106 | 2.0E-45 | ||
| CDD | 154 | 256 | 103 | 2.46313E-24 | ||
| ProSiteProfiles | 156 | 258 | 103 | 13.14 | ||
| SMART | 156 | 258 | 103 | 3.1E-24 | ||
| Pfam | 156 | 257 | 102 | 1.3E-22 | ||
| Pfam | 282 | 342 | 61 | 3.8E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0159500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…