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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0159500 |
| Transcript ID | LotjaGi3g1v0159500.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT5G60450.2 auxin response factor 4; Swiss-Prot: sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4; TrEMBL-Plants: tr|D3GBU8|D3GBU8_LOTJA Auxin response factor; Found in the gene: LotjaGi3g1v0159500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21756560..21762099) extracted from Lotus japonicus Gifu genome v1.2.
CCCCCACCCAACACACACACACACACACTCTCTCTCTCTCTAACACTTCAACCCCAAAAGCCACTACCACTTTGGCTTTT GTTTCTGTGCTTCCTAAGCATATGTCTATGTCTCCTCCCTCAGCTCCCTCTTCTCACTACTACCTGCAAATGGAGGAAGA ATCAAACTTTGAATTTCTTGATATTATTTGATGCACTTTTCTTAAACCATGTTTTGTTTTCTGTTCAACCCTCCTCTGTT TTCACCTTTGTGGTGGACTGGTGTCCCTTCCTTTTTCATGATTTGACCTCATTTCCATTTTGTTACAGTCTCAGCTTTCT CAGTTTCCTCTTTTTAAAATCCACTTGATTGCACTGCACTCTCTTGAGTCTCTTCCTTTCTCCTTTACCTTCTTTTTCCA TTTTTTTAATGTTCTATTTGGTTTCCATTTGAATCACATAGCAAGTAACTAACTACACTTGGAGTGTTCATGGAAATTGA TCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACTGTGAGAATTGTGCTTCTTGTGTTTGTT CTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCCCTTACTTCCCTACCA AAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGCATCTTTCTCTCCCTTTTCTCCATTGGA TGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTCAACTACTTGTGAGTACTTAAACTCATT GAACTAAGCTCTTAGATTGAATTGTATCTGCTTAATTCAACTCCTTTTTGTTGCTTTTGTTATTTGGTTTAGGCTTAATT GTCTTCTTTTTTGTTTTTATGTTTTTTCTCCATCAACAGGCTAATAAGGAGAATGATGAGGTTTACACCCAAGTTACTTT GCTTCCCCAGGCAGAGGTTGGATTTTCATTTTGTATAGTTATTTCTGTTTTGATGCATCTTCTTTAGTTAATTTTGGTTT GAGTTTCTTCTTGGGAAATAGACAAGTAAAGAATTTGGAACCCTGTTGTTTTGAAATGTTATATGACGCAACAGCAAGAT AAAGTAACTCTAATAGCATGTTTGGATTAGCTCATATTTTCTCAATAATCAATTATGGCATCCAGAAGCTACTCACAGAA GCTTTTCTCTATAATTGGTTTTGGCTTCAGAATCAATTGTAGAATGATTTCCAAACATGCACTAAATGTTGGGTTGTCTT CAGTTAGAAGGAATATATTTGGAGGGCAAAGAGCTTGAGGGAGTGGGAGAAGATGTAGAGGGAAATGGAAAAACACCTGC AAAATCAACCCCTCATATGTTCTGCAAAACACTTACTGCCTCTGATACCAGCACTCATGGGGGCTTCTCTGTTCCTCGTA GAGCTGCTGAAGACTGTTTCCCTCCTTTGGTATGACACCAAGATCAAGTTTCCAAGCATAATTTCTAACATAAATATTCA GAATTTTTAAAGGTGATCAATTCTGTTTATTTTCACTGCAGGATTATAAGCAGCAAAGACCCTCTCAAGAGCTTGTTGCA AAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAGGTAACCATAACAGAGAAACTCTGTCTGGTTTGGC TTCATATATTAACTATAAGTGATACAGGAAGTCCATGTGGTCATTTTTGAAGGTCAGCCGAGGCGGCATCTGCTCACTAC TGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTTCTCTTTCTAAGGTAGGTCTGTGCGCGCG CGCGTGTGTGTGTGGAACTGGGGTTTTTTTTACAAATGGCATTGATTTCTATAAGTTTGATTTTTTTTTTTAATCTTCTT ACAATTAATATCATACAGCCATTTTTACAACAAAGTAATATCAGCTGCCAAAAAAATATTTGGATTTGATCAATCTTGTC CTTTTATTGGAACGGTCATGTATCATTTTGTTGATTATTCATAATAAGAAGCTTCTTGTCATGGAGATGGTAAGGTACCA AACTAGCAAAAGGAATATCTTGTTTTAGAACATATCTCTAGACCTCTGATTTCTTTTGTACAAGAGAAACTAGAACTTGT CTTGACAAACTTTAAAAGCAAGAGAGTTGAGTGATAGTAAATAAATAATATATGAATGCCAACTTGAGATTCTACATATT AGTCTCAGAGGAAGAGGAATCTTTCATGCTACTAACTTTTAGATCCCTTACTACTTATGAATCTCTTTGTAGAGGTGAAA ATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAGAGC TGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCATGTTTCATGTTTTCTACAGTCCAAGGTG ATCATTTTTTTTTCACATGTATAGTTCTCTAACTATTTAATCTTTAATTTTCAATTTGTCATGGCTGCTATAGATGAAAT TATTTTAATGTATGCCATGATGGCAGTACGGTACTACCGTGGCATTGGTGAATAAATCAAGGAAGATCTCAAGTATTGTT TTTAGTTTTTACAATCCCTGAGACAGCTTATCTGTCAGTTTCTAATAAACTCTTGGTCACGGAACTTGATTAGATCTTGC ATAATGAGAGTCATAGTATTAATTAAGTTGACATTGTAGGTTTAGAGAACAAATGAAGCACTTGGATAACTTTTGAAGTG GTTGTTTACCCTGTATCAACATCTGTTCTGACTTATCACATAGAAGTGCTAGATAGATAAAATAAAGGGTTATTTTAGCC CACATGTTATTTAGCCCATATGAACCAAGCCACAAATTTGTGACATTTTAATTTGGTATAATGCAGAGCGAGTCATGCAG ATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTGACCGTTGGAACAAGATTCAAAATGAAATTT GACATGGATGAATCTCCAGAAAGAAGGTCGACTACAGCAGTAACTATAAATCGGTAACCATTGTCTTCCATGAACCCAAA AGAATCTTCTGAGGAATATGACACACTCTTCCTGTCTTGCAGGTGTAGTAGTGGTATAGTCACTGGAATGAGTGATTTGG ATCCCTACAAATGGCCCAAGTCAAAATGGAGGTGCTTAATGGTACGTTTTATATTTTTCTTTATGCACAATTCAGTATGT TTTGACAATATTATCCATTTAGCATTTTGAGCATATGATTTTTGTTAATGAAGTACTGAACAAATGGTGATATCTCGATC AACTTAAGCTTGCTTTGATATACAACAGGTTAGATGGGATGAGATTGTTGAAACTAATCATCAAGATAGAGTATCTCCAT GGGAGGTTGATCCTTCTGCATCTCTCTCTCCCTTGAGCATTCAAGCTTCACGAAGGCTGAAGAAACCGCGCACAGATCTG GAAGCTGACTCACCCAATCACCTAATTACTGGTATGAATAATGAATCCTAATACCAAGATAGCCAAAGTAGCATAAATCA GTTATTTCTTACTCAATGCATCCTAATAGTCCTCTCTTCTTTATTCATGTTTTTGGCTTCTTGATTGGAGGGTCGGCAAC AGGAGGCAGTGGGTTTATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAAGTTTTA TGTCACTATATTATGGATGTGACACTGTAACTAAGAAACCAGAATTTGATATCAAATCTCCAAGTCAACCTAATCTTGCA TCAACTGGAGTAAGAAAGATTACTGCTGCTGCTGAGGTTATGAGGGTTCACCCTTTTAATTACGCAGGCTTCACGGAAAC TAACAGGCTTCCGAGGGTCTTGCAAGGTCAAGAAATATTTCCACTGAGTTCCCTGACTGGTAAGGTTGATTTGAGCCTTG GTGGTTGGGGAAACCCCCATGTCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAACCTAGCTTTCACTCTTTAAGA CCAGAACTTCTTCAAACTGCTTATTTTCCTTTTGGTGATATTCACAAAGCTGGTCAAGGATTCAGCATGTTGTGCTCCAA ACCCACCAATTTCCAACGAGAGAATGTCGCGTTTAACGCTCCTTCCACTCAGTCAGGGATCATGAGAAGTGAAGTTGGAC TTTCAGACCTGACCATCCCAAATGAGCAGAAGCTACAGGATAATATTTCTGGAACTGCTGCTTCTTTAGGGGCAAACATA AGGATTCTAAATGATGACAATTTCGATGGGAAGGTAAACGCTTGTAAACTATTCGGATTTCCCTTGTCTGGGGAAAGTAC CTCCCAAAATTTACAGAACACTGCTAAAAGAAGTTGCACCAAGGTGAGCGATGATAGCAACAGAGTTATATTGTGATATG ACTTTTTATCTTCCTTTGATGATTTGCATATCCATGTAACATAACACTGAATGAAGGTTCACAAGCAAGGTAGCTTAGTT GGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGAACTAGAGAGGCTATTTAGCATGGAAGG CCTTCTAAGAGAACCTGATAAGGGATGGAGAGTCCTCTACACTGACCGTGAAAATGACATCATGGTTGTGGGAGATGATC CATGGCAGTAAGTATTTGACTCAAATATTTCTTTATTCTAATACTGCTTTGCCATCTTTTAGGAATTTGGCTTACCTACA GTTGGATAGTTCCTAAATTCATCCAGTCAACGAATCTAAGCCATCCAATTTCGAAGATATCTCTACCATCTGACTTTGGT GAAAAATATGAGCCGATCGATCTTGATCTTATGGTTCAAATTTCATTTATGTGTGTGAATGTAGGAGATCGGTGACTGCA GAGAATCCATCACTTCACTGCACTCATTTATTGACTGAAAAATGCATTTTTCCTGTTTTCTGCAGTGAATTCTGCAATGT GGTATCCAAGATTCATATATATACACAAGAAGAAGTGGAGAAGATGACAATCGGTATGATGAGTGACGATACTCAGAGCA GTTTGGAACAGGCACCACTGATTATGGAGACTTCTAAGTCCTCCTCAGTTTGTCAGCCAGATTCTTCTCCGACGGTAGTT AGAATCTAGTTTCAAGGTTGTATTTAGTATTCTTATGTTGGCTCTGTTGCTGTTTTATGCAATATAATCAAATACTGAAC TACCTTGGAATTTGTATGGAGCAAAATAACATCGTTAGGAAGGATAATGGACAATGTGCCATCTGAAGTTGCTCAATAAT GGTGTCATTACCGCTTGAGAGTTACATTCTGAGTAGAAATGGTGTCCAAATCCTAGTTACCTAATGACACAATTTCTTTT CAAAGTGAGGCACGGTGCTTCACAAAAAATATTCGCTGAAATTCTGAAAATACCCCTTTCAAATTTTATTATTCCCAACA TACCTTATCCTCTCATCTAA
CDS sequence (LotjaGi3g1v0159500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACTGTGAGAATTGTGCTTC TTGTGTTTGTTCTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCCCTTA CTTCCCTACCAAAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGCATCTTTCTCTCCCTTT TCTCCATTGGATGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTCAACTACTTGCTAATAA GGAGAATGATGAGGTTTACACCCAAGTTACTTTGCTTCCCCAGGCAGAGTTAGAAGGAATATATTTGGAGGGCAAAGAGC TTGAGGGAGTGGGAGAAGATGTAGAGGGAAATGGAAAAACACCTGCAAAATCAACCCCTCATATGTTCTGCAAAACACTT ACTGCCTCTGATACCAGCACTCATGGGGGCTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTTTGGATTA TAAGCAGCAAAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAG GTCAGCCGAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTT CTCTTTCTAAGAGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATC AATTGTTGGTAACCAGAGCTGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCATGTTTCATG TTTTCTACAGTCCAAGAGCGAGTCATGCAGATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTG ACCGTTGGAACAAGATTCAAAATGAAATTTGACATGGATGAATCTCCAGAAAGAAGGTCGACTACAGCAGTAACTATAAA TCGGTGTAGTAGTGGTATAGTCACTGGAATGAGTGATTTGGATCCCTACAAATGGCCCAAGTCAAAATGGAGGTGCTTAA TGGTTAGATGGGATGAGATTGTTGAAACTAATCATCAAGATAGAGTATCTCCATGGGAGGTTGATCCTTCTGCATCTCTC TCTCCCTTGAGCATTCAAGCTTCACGAAGGCTGAAGAAACCGCGCACAGATCTGGAAGCTGACTCACCCAATCACCTAAT TACTGGAGGCAGTGGGTTTATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAAGTT TTATGTCACTATATTATGGATGTGACACTGTAACTAAGAAACCAGAATTTGATATCAAATCTCCAAGTCAACCTAATCTT GCATCAACTGGAGTAAGAAAGATTACTGCTGCTGCTGAGGTTATGAGGGTTCACCCTTTTAATTACGCAGGCTTCACGGA AACTAACAGGCTTCCGAGGGTCTTGCAAGGTCAAGAAATATTTCCACTGAGTTCCCTGACTGGTAAGGTTGATTTGAGCC TTGGTGGTTGGGGAAACCCCCATGTCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAACCTAGCTTTCACTCTTTA AGACCAGAACTTCTTCAAACTGCTTATTTTCCTTTTGGTGATATTCACAAAGCTGGTCAAGGATTCAGCATGTTGTGCTC CAAACCCACCAATTTCCAACGAGAGAATGTCGCGTTTAACGCTCCTTCCACTCAGTCAGGGATCATGAGAAGTGAAGTTG GACTTTCAGACCTGACCATCCCAAATGAGCAGAAGCTACAGGATAATATTTCTGGAACTGCTGCTTCTTTAGGGGCAAAC ATAAGGATTCTAAATGATGACAATTTCGATGGGAAGGTAAACGCTTGTAAACTATTCGGATTTCCCTTGTCTGGGGAAAG TACCTCCCAAAATTTACAGAACACTGCTAAAAGAAGTTGCACCAAGGTGAGCGATGATAGCAACAGAGTTATATTGTGA
Protein sequence (LotjaGi3g1v0159500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIDLNDAVTEVDKNAYCNGDCENCASCVCSGSSSAIVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPF SPLDVPTYDLHPQIFCKVANVQLLANKENDEVYTQVTLLPQAELEGIYLEGKELEGVGEDVEGNGKTPAKSTPHMFCKTL TASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKKLVSGDAV LFLRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISARSMFHVFYSPRASHADFVVPYHKYVRSIKNPV TVGTRFKMKFDMDESPERRSTTAVTINRCSSGIVTGMSDLDPYKWPKSKWRCLMVRWDEIVETNHQDRVSPWEVDPSASL SPLSIQASRRLKKPRTDLEADSPNHLITGGSGFMGFEESVRSPKVLQGQENTSFMSLYYGCDTVTKKPEFDIKSPSQPNL ASTGVRKITAAAEVMRVHPFNYAGFTETNRLPRVLQGQEIFPLSSLTGKVDLSLGGWGNPHVSCTNYNLHQATKPSFHSL RPELLQTAYFPFGDIHKAGQGFSMLCSKPTNFQRENVAFNAPSTQSGIMRSEVGLSDLTIPNEQKLQDNISGTAASLGAN IRILNDDNFDGKVNACKLFGFPLSGESTSQNLQNTAKRSCTKVSDDSNRVIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 686 | 666 | 0.0 | – | |
| PANTHER | 21 | 686 | 666 | 0.0 | – | |
| SUPERFAMILY | 148 | 267 | 120 | 1.83E-44 | ||
| Gene3D | 153 | 258 | 106 | 6.3E-45 | ||
| CDD | 154 | 256 | 103 | 1.55503E-23 | ||
| ProSiteProfiles | 156 | 258 | 103 | 13.14 | ||
| Pfam | 156 | 257 | 102 | 4.1E-22 | ||
| SMART | 156 | 258 | 103 | 3.1E-24 | ||
| Pfam | 282 | 373 | 92 | 6.8E-28 | ||
| Gene3D | 319 | 403 | 85 | 3.6E-31 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0159500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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