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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0163200 |
| Transcript ID | LotjaGi3g1v0163200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Double stranded RNA binding protein 3; TAIR: AT2G28380.1 dsRNA-binding protein 2; Swiss-Prot: sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2; TrEMBL-Plants: tr|G7IRT5|G7IRT5_MEDTR Double-stranded RNA-binding motif protein; Found in the gene: LotjaGi3g1v0163200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22205317..22210577) extracted from Lotus japonicus Gifu genome v1.2.
CGAGATTTAGTCACAGTTAAAGCTTCGTCTCACACCTCCCCCCGAGATTATTGTGCCGGATCGAACACGAGATTTCTTCC GACACACTCGATCTGTATTGCCAACTGAGATATCGTCTTGAGTATATTTTAATATTTAATATTAACACTCCCAAACAAAA AAAATAAAGTAGTTAATTTCTCTCTCTCTTTCTACTCTTTTGCTTTCTTCTTCCTTTCTTCTACTACTTCAGTTTCTTCC TCTCTCTAACCTTCACTTCCTCTTTCAGTGAACCCTAGATTCTGTTAATCTCTCCGGCGACGGTTTCCGGCAGAGACGGC GGTGAATCGGGTGGTCCGATCTGTCTCCGGCTACCATTTTTGTTGGCTCTGAGCGAAGTGAGTGAGTGAGATTGGGGAGG GGAAAAATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGCGAAGCTGCTTCAATCTTCCTTCCTACACTTGCATTCGGGA AGGTCCTGATCACGCGCCGAGGTTCAAGGCCACCGTCAACTTCAACGGCGAGATCTTCGAGAGTCCTCACTACTGCAATA CTCTCCGTCAGGCGGAGCACTCCGCCGCTGAGGTCGCTCTCAGTTCGCTCTCCCACCGTGGTCCGTCTCACTCCCTCGCC GCTAAGATCCTCGTGAGTTCTCTCTCTCTCTTTGTGTATCAATGTTGCTTTTAGTTTTAGGGTTTTGCTTTTTTTTTCTC AGTTCTATTTGCTTGATTACTGTAACGGAACCAAAAATGGAAAATGATGATAAAGGTGTTTGCTATTGTGCGCGTGCTGT TTGCTATTGTGCGCGTGCTGATGAGCTTGGACTGTTTTCTGATTGTGAGTGACTCTCGGTGAGGGGAAGCTTGTGGTTGT GGTATCGCGCCGTCGCACGGGGTGGGTCACGCCGGCGCTGCTCTTAGGCACGGTTGGGTTGGGATGTGGAATGACTGAAG TGCCCTTGGAGTTGTTTGATTGGAGAGAAGGTAGGAACAGGGTGAACTGGAAAATGTTGGTTGTAGGATCATGTGGTGGT GAGTGGGTAGACTACTACTGTGTGTGCAGTGAAGTGTGGAATGAACCGCAATTCTGTGTGAGGAGCTTTGTTTCAGAGCT AAGGTTTTCAGTTTTCAGTGTTTTTCAAGTGTTGATGATACTACTGTTATTTGCCGAGAATGAAAATGAAAATTGCTATG TGAGGGTAGAAACATGAACAGCTTTTGGTTAGTCTGGGGTGTGATTTATAACTTGATGCTGACTTCATGCACCGGCACAA TGCTGTAGTGTTAGTGTCTAGCGCTTTTGTGTGATATAAGGAATGACATGTATGTTTCTGCTCTCTGTTTGTGATTGTTT GGGCGAAGTGCTAATTATCTGAATTATGTATGTTGCTGAAGATAGGTCATGGATAGAGCATGGCAGTTGGAAAATTTCCC AGATTCGCAATCTGGTTTTTATTTAAGCCATCATTCCTGTCAGTTGCAGTTGCATTTGAATCCGGATATGGTTTAATTTT TCATTTTGAGTGTTGCATTTGAATCCGGATATTGTTTAATTTTTCATTTTGAATAAAGGCTATTATTGTATTGACAAGAC AAGGGACAACAATGAACTTCATCAAAGTGAGTTTGGATGAGAACTGCTGAGTCGGGGGGGGGGGGATATTTGGTATTTTT ATGGCATAATTGGGCAATTGGCAACAGTAGTATTCGAGGTGAAATGCAGTAGTTTTTTATTCATGCCCCATTTGTGTTAA TCCTCTTATTCAAACTTGTTAGAGTCACAATGTTACCAATAATTGTTGTTTCTAGAAGAAAGTTGTGGTATTGAACCTGT GATTATTAGTGCAAATTTGCAATTGATATGTATAATCATTCATAAGATGTGGTAGTCTTTGTTAGATGTACCTATGTGAA AGATAACATGAATGTGTTTCTAAGAACAGGAGTGAAATTTATGCTACTCTGCTGTATAACGTGTAAAATGTTCACTTTTC TGTAAACTTCTAGTGCTTTTTGTCAATTTGCCAATTAAAACAAAAATCGGTCAAATAATATATTTGATTCACCATTTGAC CCAAGTAGTACATTCTCTGCAATTTCTTCTATGAGTCCTTGATCTACCCCTTGTCTTCTAAAGGGGAATATGTAGTAACC CCAGCATATGGTGCAGGGTTCTATATTTTTTATGTAGTATGCATACACTTATCTGTCTCAAATCTTTTTTTTGGTACATA TCTGTCTCAAATCTAAGTATTGTATTCACATTAAAGGATAATTTCTATTTAAAATATGTTCTTCTGTTAACCTGGTTACC ATTGTTAATATGTTTATTAATGTCCATATACTTATCATACTCTTTTTTTCTTAGGATGAGACTGGAGTCTACAAGAATCT CTTACAGGAAATTGCACAGAGAGTAGGGGCTCCATTGCCTCAATACACAACATTCAGGTCAGGCTTAGGGCATTTACCTG TTTTTACTGGAATAGTGGAGTTGGCTGGAATCACATTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCTGAAAAAAAT TCTGCTATGGCGGCTTGGTCATCTTTAAAACAATGTAAGTGGCTGTCTCGCTTTTCTCTAAAAAATTAATTGTTTTTACA GAAATATCTATTTGTCCTCTGAATGTAGCATTATACTTTGACTACAAAATGGAACACTGGGAGTATCAACTCAAGCCTGT TTTCCCTGTGTTTTCTGATTCTTTTAATACATGTGATTCATTTCTGATAGGGCCAATATGATCTTCAACACAGTATTAAC GTGCCTTTTAGATGCCTAACACTGAAGTATTTTCATCCCCAGTTAAATTTTATTTAAAATTATGTCTGAGAAAGCTTTTC ACATGTCTTTGCTGCAAGTTAGGGTTTGTTTGGGTTGTAAAAACATTTTACTTTTCTTTTCTATGTTCACTTTTAATTAC AAGAAGGCCACTTTGTTTTCTATTTTCCAAGTTTTGTATAGAAAACGGTAAAAATTATAAATAAATAGAAAGTTGCATAG TGTTCCATATAAAATTTTGAAAACATGAAACAAAGTGAAAAGGTGACAATTTTGTAATTGAAATTGAAAACAAGAGATGA AAACATAATTTTTTTTACTAATGAAACAGGTCCTGAACAACCTTTTTGTTTCCTGTTTGAGTCAGATTTACAGTTTTCCA TGGAAATGATTGAATATGAATTGACAATAGTTTTCTTTCTCACCAGTGGCCAAAGAGACTGCTAGCTCTTCAAGTGAACC AGAGAACAATGACGAACTAGAACAGATCACTATTGCACGGGCTTTACTGAACTACCGTCTGAAGGAAAAGATGGCAATGT CTGATCCAAATGCTCCAATTCCATTTCAGAAGAAGTTTCAGATTCAAAGTCCCAGGCCAACCAGTACTCAACCTCCACCC CCCAAAACATCAAAGATCCTTCCTCTAATTTGCCAAAAGGCAGCACCTCGAAGCAGGCCTTCATTGGTAACAGCAAATGA CAGTGTTCGAAGCAAACCTTCTTTTGCAACAGCTAATGATAATCCTCGAAGCAAATATCCACCAGCAGCAGCAACCAGTG ACAGATCTGGGGTGCCACCACAGTCTTCTGCTCTGGAAAGCCGGGTATTCCGTCCCCTGAAGTTCCCTGCGGCAGGAGCA GCACCTTATGTTCCCCTACGACAAATGAGATCACCTTGCCATGGGGTTGCACCTCCAGTGACTGTAAGGAACATGGTACC TGTATTCTCTGCACCACCCCTTCCACCACCTCCTACAGTGCATCAGGTAATACGAGCTCCTCCTGTACGAGTTGCTCCTC CAGTCAATATTCGGCAAGCTATTCCTGTATATGCTGCTCCGCCAGTGCCAGCAAGAAAAGATGAACCTTCTCTCATACAA AAAGATCTGTCTACTATTAGTATCCCTTGCCAGCAAGATATACTGCCACATAAAATTCAAGAGACGGGCAAGGCTGAGAA CAGCCTACCAGTCAATTTTCAGCAAGCTATTCCTGTATATGCTGCACCACCAACAAGAATAGATGAACCTTCTCTTATAC AAAAAGAAGAGCTACCTACTATTAGTACCCCTGGTCAGCAAGATAAACTGCCACCTAGAGTTCAAGAGACGGAGAACAGC CCATCAGAATCAGAGACCGTGCGTAACTTGGAGAAGCTGAAAATTTGAAATTTATTGGAGTGGATCTAAATTGAAGGCAA CACCATCATGCTTTTGTGCAGATCTAGAGCTTGTTTCAGATACTATGGTGATGTTCAGTCATCTCTTCCTTTTTCCTTCC TCACCCCATTTTGTCCCGTTAAATCCGACAGTTCGCTCAGGTTAATTAGCATCAGTTGTTAAATATCTGTGAAATTCAAG AGCAAATTGGCATTAGATTTACTGGTATTTTTACTTTATTTATGCATGCCATATCTTAGAATAGCTTTTCAGCTAGTTTG TAAGCTTGATTGTTGCTCGCTTTTTGTGATTATTATTACTCTACAATTGCTTGTGCAGTTGTGGAATTTCTGCTTTACTT TTCTGTTACCTCAATAGTTGCCTAACCATCATGGTAAGTTTGATTTGTGAGCTGAGAATGTCTTTGGAGAAGAAAAGCCC CAGACCTAGCTCTATGCTAGTTCTGTTGGAAACCTTACCCCTGTAACGGACCGGAAATAGCTTATTTAGTTTCTATGTTA ACCCCGGTCAGTGGACAGAATTCTTATTAGGTTGTCCTATTATTGTTAGAACTGGAGCTACAAGGGTAGAATCAGTGTTA TCTAAATTGCTATGGCAGAATCTCATGGCGGATTATTGACTCTCCGCCGTGACCTATAATCCTCCACCCGCCATCATTAC TTGTCAAATATGGCGGGTTTTTTGCTCTGCCATTAACAACATTGAGTAGAATCGGATTCTCCGGTAAGTTCCAAAACTAG GTATGCCTTCCATTCCATAGAATGTGGATCAATGTTTTCTGATTAGTATCCGTTATCTTCACACTAATTTTCATTACACT CAGCATATTTGGAAACTTTGTGGGACAACACGGTGACATTAAGATCACTTCTAAACTACAAGTTGTAGCTTCTTTTAGGC ACAACTTCAGCCTAACACACTGTCTTGACATTAGCTTTGAGTAATACTCCAATTCAAACCTAGGATTGCTGGAGGTTGTC TTTATTCATGTGGATCAATATTTTTATCCTTCTCCGTTCAAAATGCCTTCTCGTGTCAAGC
CDS sequence (LotjaGi3g1v0163200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGCGAAGCTGCTTCAATCTTCCTTCCTACACTTGCATTCGGGAAGGTCC TGATCACGCGCCGAGGTTCAAGGCCACCGTCAACTTCAACGGCGAGATCTTCGAGAGTCCTCACTACTGCAATACTCTCC GTCAGGCGGAGCACTCCGCCGCTGAGGTCGCTCTCAGTTCGCTCTCCCACCGTGGTCCGTCTCACTCCCTCGCCGCTAAG ATCCTCGATGAGACTGGAGTCTACAAGAATCTCTTACAGGAAATTGCACAGAGAGTAGGGGCTCCATTGCCTCAATACAC AACATTCAGGTCAGGCTTAGGGCATTTACCTGTTTTTACTGGAATAGTGGAGTTGGCTGGAATCACATTTACTGGTGAAC CTGCCAAGAATAAGAAACAAGCTGAAAAAAATTCTGCTATGGCGGCTTGGTCATCTTTAAAACAATTGGCCAAAGAGACT GCTAGCTCTTCAAGTGAACCAGAGAACAATGACGAACTAGAACAGATCACTATTGCACGGGCTTTACTGAACTACCGTCT GAAGGAAAAGATGGCAATGTCTGATCCAAATGCTCCAATTCCATTTCAGAAGAAGTTTCAGATTCAAAGTCCCAGGCCAA CCAGTACTCAACCTCCACCCCCCAAAACATCAAAGATCCTTCCTCTAATTTGCCAAAAGGCAGCACCTCGAAGCAGGCCT TCATTGGTAACAGCAAATGACAGTGTTCGAAGCAAACCTTCTTTTGCAACAGCTAATGATAATCCTCGAAGCAAATATCC ACCAGCAGCAGCAACCAGTGACAGATCTGGGGTGCCACCACAGTCTTCTGCTCTGGAAAGCCGGGTATTCCGTCCCCTGA AGTTCCCTGCGGCAGGAGCAGCACCTTATGTTCCCCTACGACAAATGAGATCACCTTGCCATGGGGTTGCACCTCCAGTG ACTGTAAGGAACATGGTACCTGTATTCTCTGCACCACCCCTTCCACCACCTCCTACAGTGCATCAGGTAATACGAGCTCC TCCTGTACGAGTTGCTCCTCCAGTCAATATTCGGCAAGCTATTCCTGTATATGCTGCTCCGCCAGTGCCAGCAAGAAAAG ATGAACCTTCTCTCATACAAAAAGATCTGTCTACTATTAGTATCCCTTGCCAGCAAGATATACTGCCACATAAAATTCAA GAGACGGGCAAGGCTGAGAACAGCCTACCAGTCAATTTTCAGCAAGCTATTCCTGTATATGCTGCACCACCAACAAGAAT AGATGAACCTTCTCTTATACAAAAAGAAGAGCTACCTACTATTAGTACCCCTGGTCAGCAAGATAAACTGCCACCTAGAG TTCAAGAGACGGAGAACAGCCCATCAGAATCAGAGACCGTGCGTAACTTGGAGAAGCTGAAAATTTGA
Protein sequence (LotjaGi3g1v0163200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCNTLRQAEHSAAEVALSSLSHRGPSHSLAAK ILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNSAMAAWSSLKQLAKET ASSSSEPENNDELEQITIARALLNYRLKEKMAMSDPNAPIPFQKKFQIQSPRPTSTQPPPPKTSKILPLICQKAAPRSRP SLVTANDSVRSKPSFATANDNPRSKYPPAAATSDRSGVPPQSSALESRVFRPLKFPAAGAAPYVPLRQMRSPCHGVAPPV TVRNMVPVFSAPPLPPPPTVHQVIRAPPVRVAPPVNIRQAIPVYAAPPVPARKDEPSLIQKDLSTISIPCQQDILPHKIQ ETGKAENSLPVNFQQAIPVYAAPPTRIDEPSLIQKEELPTISTPGQQDKLPPRVQETENSPSESETVRNLEKLKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 387 | 387 | 1.2E-171 | – | |
| PANTHER | 1 | 387 | 387 | 1.2E-171 | – | |
| ProSiteProfiles | 1 | 70 | 70 | 11.674 | ||
| CDD | 2 | 68 | 67 | 3.40996E-17 | ||
| Gene3D | 2 | 86 | 85 | 8.9E-24 | – | |
| SMART | 2 | 69 | 68 | 1.0E-18 | ||
| SUPERFAMILY | 2 | 68 | 67 | 5.81E-18 | – | |
| Pfam | 2 | 68 | 67 | 1.2E-15 | ||
| ProSiteProfiles | 87 | 155 | 69 | 10.12 | ||
| SMART | 88 | 154 | 67 | 1.0E-17 | ||
| CDD | 88 | 153 | 66 | 2.84145E-14 | ||
| SUPERFAMILY | 88 | 160 | 73 | 2.67E-17 | – | |
| Gene3D | 88 | 170 | 83 | 5.2E-20 | – | |
| Pfam | 88 | 153 | 66 | 4.3E-10 | ||
| MobiDBLite | 237 | 283 | 47 | - | – | |
| MobiDBLite | 239 | 261 | 23 | - | – | |
| MobiDBLite | 434 | 475 | 42 | - | – | |
| MobiDBLite | 436 | 464 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0163200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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