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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0163800 |
| Transcript ID | LotjaGi3g1v0163800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT1G08010.1 GATA transcription factor 11; Swiss-Prot: sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11; TrEMBL-Plants: tr|A0A151S5F9|A0A151S5F9_CAJCA GATA transcription factor 6; Found in the gene: LotjaGi3g1v0163800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22284091..22288354) extracted from Lotus japonicus Gifu genome v1.2.
AAAATATATTTATTTAAATCACGAGAGGAGGATGAGGGTTTCCTCATGTAGCAGCGCCTATGGCGTAGAAAAATAAAAAC CTAATTTACCAAATTCAGGCACAGATTTTCTTCATCTTCCTCTCTCTTCTGCAAAATTCATCTTCTTACACACTCTCATT CCTCTTTCTCCGTTCGCAAATCACTGTCATTGTGCTCAATTTCCTCACTCAAGCTAAATCGTGTTTAAGGTACTTCAAAC CCTCTTTTTTTTCCCCCTTTTCATTTTTTCAGTAAATTTTTGCATGCATTTTGCTTTTTTCGTTTCTGGGTATTTTTGTT TTCGTCTCTAAAATGGAGGAAAGTGTGAAAGTTTGGAGCTTTATTCCATTTTATTGGTTTGTGGAAAAATGCAATGTAGA CAGGGTAAATTACTGTGGTGCTCCAAATTAGGCCAGACAAGGATAACATGCTTATGAGATGAATTCTGATTTTTTTGGGT GATTTGTTTTTTTGGTAACTTTTTTTTTGTTGTGATTTTGGACCAACCATTAATTGTTTGTCTTTGTTTCTTTTTCAAAC ATGTTATATAGTTTGCAAGAAAAGGAGGATGGTGTGATAATGTTGGTAGTTGATTCTCTTCTGTGGACTGTAATGTTTTT GTAACAGGATATTGCCAAAATGAACGACTCTTGGCTCTTGGATGAAATGCTTGATGATCCCAAGTTTTTTGATTTCCCTA TGGAAGATTTGGAACCTAATGCTATGGAAGAAGACTGGGCTGCTCAATTTAAACGCCTTAACGAGCCGTGTTTTGATGCT TTTTCAGTAGTAGCGCCACTTGGGCATTGTGGCGAAACCCAAAATGAAAAACCCCAACTTGGAAAGGGTTTCCCTGCTTC TGTGAGTATTCTTCTGTCCATAATTGTAGTGAACTGAATCTTTGATGTCTTTTATCTGCTTAACTTATTATCTGACATGT TACCCCTCTCCCAACAGTTATACTGAAAAGTCAAGATTATATACTAAATTGCATTGCACTTATTCTGAAATTACATGAAT GCATTGACATTGAAGAACACAGTTTGATGATTTAGGTCCTGTTTTTTAAGTTTTGTTATAGAAAATACCATTTTGTTTGA TATGATCTATACTTTCTGAATGAAATGTTTCTCCTGAATTTTAATCACAGACCTTTGATTGCAAATGTTAACATTGTCAC CTAGACAACTAGGAGATTTTATAGTTGGATTTTTAGCAGGAGGTGAGTTCTCTTTGTTCTTAGACTTTTACTAGTTTTTA CAGTTGGGAGGATATTTACACGAATAGTGTTGGTAATAGGCCATGAGTTTGTGGAGTGGTTAAGAAATTTGTCGAATTAA CTTGGCCCGATTTCGGTGAACTGGAGTTGGTTTAATTTTTCTGCATCTACTCAACAGGCAGGATTATTCTGCAACTTTGA TTGCATGTCCCATTCTTGATATATACTATTGAGTTGTTTCCACAAGTAAAGAGTGGGAAAATTAGCAATGATGACTTTCA TGGCAGTACTCTGAATTCCCTTGAAAGCATGCTGCTGATGTCATTTACTCATCCATGAAAATAACTGGACTTCATAGGAA ATGTATTATAGATAACAAATTTGTAAGAGAAGTTTCTTCTTTTCATCTTCTACCAACCCAAAAAATCCTGGAGATGGTGC TGTCATACTGTCTGTAGTGCTTAGCCTTTATGCACCTAAAGTTGGAATTTATCGAGGGTTGCACTTGCACAACAAAGGGA GGACGAAGGTAGGAAACTGGTGGTAATCCATTTCCTCTCCCATTCAGGTTGCTTAAACTCCTTCTGTTGCATGTTTTTGG ATGACATCAGAAGGTGGAAAGAAAAATGAAAGAGAAAGAAAGAAATATGGAAAGAAAGACGACAGAAAAAGAAACAATGG GAAAGAAAGAAAGAAAGAAAGTCGGTGGGAAATGAGTCATCTGGTTTATTTTTAGTTATCTAATGGTTTAGTCTAGATTT ATCAATCATAATTGTTCGGTTCTAAAATTTAATATTGTCTTTACATATCAATTTTTTTTCAATGAAATGTGTGTTTTAAG TTTTAAAAAGAGATCTAATAGCATGAACTTCTATATATTCAATTGGAAGCTGTATTGAGTATTCATAGTCTGAAATATAT TAGTTGACTCATGTAAGCTTTTGATGTCTAAACCACACCTTGGTACTCAACTACTCATGCCTTTAATATTTATCGATGTT GCTCTCATAAAGTGAGCAAGTTTTGGTAACAATATTTGGAAAGTACTTGGGATTTATATATGCTTAGTTATTATGTATGA TGAATAGATGGCATGCATGCATAGAAAGATGTAAAATTTGCATTCTTGGTTACTTAAGAAGTGGATGAGTGATGAGTTGG TGTTTTATGTGCTGGTATTTAGTGAATAATGGGTTGCAGACTTGCAGAATTAAATTGAGGAAACTTCCTGTCTCTGGTAA GGTGACTGAAACAACTAGGCTGGGGCTGAGTGTAGATCGTGGGTTTTAATGAAAAAGAAAATGATTTAAGTTTACAATGT CTATAGACAACTTCCTTAAGAGACAAGACTATGTGTGCAGTGTCGCAAACTGAAATTGCAAAAGGATGCAGGTTGTTTTG AGTAGCTAAGGTTCTTTGATCCCTGATAGAATGATTTGACTTGACAGCATCTGATAATTGATAACTACTTTATGATTATG TATTTTAGCACAGCAGCAATTACCTAGATTCCTCTTTCACTTATTAATTCAAATACGGGTATCCACTGTTGTTGCATTGA TTATTATTTATCCTTTTTTATTATTGGTTTTGATGATCATTTGGCTTTCAGTGTACTGGGATTTCCCCAATAAAACAACC TCGAAAGACTAGTGGACCAACATATGGAAAAACCATTCCGAAACAGAACGTTGCTTTCAATGGAAAAGACCTGCATCGGT TGCGAACCTACAGTCCAGTTTCTGTTTTTGAAAGCAGTAGTTCCTCCTCAGTTGAGAACTCCAACTTTGATCTTCCTGTC ATCCCAGCGAAGCGTGCTCGAAGTAAACGTCTGCGTCCTTCAAGCTGCAGTTCTCTATTCTCAGTTCCTTTCATCCTTAA TTCACCAGCTTTGCGAAAGCATCAAAGCACACCTGCCTCTGAATCAGATTTAGAAACAGGCGATGCTGAGAAACTACTTA ACAAGGCAAAGAAACAGAGGAAAAAGGATCTCTTCATGCTTTCGGATGATGCCGAGATGAAGAGATTCTCATCACAGGGT TCAGCTGTCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAAGGACCTATGGGTCCCAAGAC GCTATGCAATGCTTGCGGTGTTCGGTACCGGTCGGGCCGCCTCTTCCCTGAATACCGGCCTGCAGCTAGCCCAACTTTTG TACCAGCAGTGCACTCAAACTGTCACAAAAAGGTCCTGGAGATGAGAGGAGCCATTTAGGAGGCTGTTAGAGGTTCTATG TTGGTTCCATCAAATCTCAGCAAATTATGTAGAATATTATTATGTTGCTTTTATTTATTGAGGGAGAAACAGTAGTCCAA AACAGGATCCTCCTTTTTTATTTTTTGTTTAAGTCTAATGTTCTTATATTGATTAGCATTTTTTGTTTAATGTAAATGGA TTGGTGAAATAAAAGGTGTAGAACAGGATCACTGATCAGTACTTTCTAGGCATTCAGGAGAATGGCCTTGAAAGTTCAAG AGGTTGAGACTGGTATGTAGATGTCTAACTGGATCACATGCATGGCAGTGAAGCTAAGAGGACATGAAGTCAAAGAGGAT CAAATTAAGGCATGGACAATGATATCACATGCCTTGTAACATGGCATGATGGCACAAAATTTTAGTGAAAGCACATGCAT GCCATTTTATGGGCTTCCCTCTCAACAGGCGGGAATAATATCTTTTCAGCCAGCTTCAGAATGAGTTGGTTATTTACCAT GCTAAACAGACTAGTAGAATTTGTTTCTAGCAGGTTAGTTTGAAGAGCTAGCTCCTACTTATCTCCGGCGAGCTGACCAA TTTTTTTTTTCTTTCTGAAATGATATTATCCATTTTTAAATGCTTTATATTTTCATTTTTTTTTTGATAAGCAGCTTTAT ATTTTCATGACTTTAATGTGCAGTTTGCAATTTATATTTTTAAATGCTTTATAGTTTCTTGTCCCAAAAAAAATGCTTTA TAGTTTCATGATTTTAAAGTGCAG
CDS sequence (LotjaGi3g1v0163800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGACTCTTGGCTCTTGGATGAAATGCTTGATGATCCCAAGTTTTTTGATTTCCCTATGGAAGATTTGGAACCTAA TGCTATGGAAGAAGACTGGGCTGCTCAATTTAAACGCCTTAACGAGCCGTGTTTTGATGCTTTTTCAGTAGTAGCGCCAC TTGGGCATTGTGGCGAAACCCAAAATGAAAAACCCCAACTTGGAAAGGGTTTCCCTGCTTCTTGTACTGGGATTTCCCCA ATAAAACAACCTCGAAAGACTAGTGGACCAACATATGGAAAAACCATTCCGAAACAGAACGTTGCTTTCAATGGAAAAGA CCTGCATCGGTTGCGAACCTACAGTCCAGTTTCTGTTTTTGAAAGCAGTAGTTCCTCCTCAGTTGAGAACTCCAACTTTG ATCTTCCTGTCATCCCAGCGAAGCGTGCTCGAAGTAAACGTCTGCGTCCTTCAAGCTGCAGTTCTCTATTCTCAGTTCCT TTCATCCTTAATTCACCAGCTTTGCGAAAGCATCAAAGCACACCTGCCTCTGAATCAGATTTAGAAACAGGCGATGCTGA GAAACTACTTAACAAGGCAAAGAAACAGAGGAAAAAGGATCTCTTCATGCTTTCGGATGATGCCGAGATGAAGAGATTCT CATCACAGGGTTCAGCTGTCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAAGGACCTATG GGTCCCAAGACGCTATGCAATGCTTGCGGTGTTCGGTACCGGTCGGGCCGCCTCTTCCCTGAATACCGGCCTGCAGCTAG CCCAACTTTTGTACCAGCAGTGCACTCAAACTGTCACAAAAAGGTCCTGGAGATGAGAGGAGCCATTTAG
Protein sequence (LotjaGi3g1v0163800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNDSWLLDEMLDDPKFFDFPMEDLEPNAMEEDWAAQFKRLNEPCFDAFSVVAPLGHCGETQNEKPQLGKGFPASCTGISP IKQPRKTSGPTYGKTIPKQNVAFNGKDLHRLRTYSPVSVFESSSSSSVENSNFDLPVIPAKRARSKRLRPSSCSSLFSVP FILNSPALRKHQSTPASESDLETGDAEKLLNKAKKQRKKDLFMLSDDAEMKRFSSQGSAVPRKCMHCEVTKTPQWREGPM GPKTLCNACGVRYRSGRLFPEYRPAASPTFVPAVHSNCHKKVLEMRGAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 287 | 281 | 2.7E-118 | – | |
| PANTHER | 7 | 287 | 281 | 2.7E-118 | – | |
| MobiDBLite | 78 | 97 | 20 | - | – | |
| MobiDBLite | 80 | 97 | 18 | - | – | |
| Gene3D | 217 | 269 | 53 | 2.4E-14 | ||
| SUPERFAMILY | 217 | 279 | 63 | 7.13E-15 | – | |
| SMART | 218 | 268 | 51 | 5.2E-17 | ||
| ProSiteProfiles | 218 | 254 | 37 | 11.503 | ||
| CDD | 223 | 270 | 48 | 8.79949E-15 | ||
| ProSitePatterns | 224 | 249 | 26 | - | ||
| Pfam | 224 | 257 | 34 | 3.1E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0163800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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