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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0166500 |
| Transcript ID | LotjaGi3g1v0166500.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycogen synthase; TAIR: AT3G45100.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q94BX4|PIGA_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit A; TrEMBL-Plants: tr|K7N1R1|K7N1R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0166500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22718427..22722026) extracted from Lotus japonicus Gifu genome v1.2.
AGTAAAAATTTGGGGAAACGCATCTTCTCTCTCCCAGCACCACCGTGTGAGCCCCATCGCCTTCACCGCGAGCTACTTCA CGCCTCCGGGAACCTACGGCGTCGTTTACAAGGCCCGTGACCGCGTCACCAACGAGACCACCGTGTTGAATGATCTCTGT CTGTCTTGTTGTTTTTCAATTATTCTGCAGCTACCTGAGTGAGGGGACAATAATGGGTGATCCCCAAAAGCATAGAATTT TAATGGTGTCTGATTTTTTCTACCCCAACTTCGGTGGTGTGGAGAATCACATTTATTATCTCTCACAGTGCTTGCTCAAG TTAGGCCACAAGGTCAGCCAAAAGTTGTAATTTTTGTGATTCTCTTGAATATTTTTTTACATATCTCTGGCAATGCTTCC ATTTCATAATAGCATTTGGGTTTAAGTTATTCATGAGGGTATTTTGTGTAGATTACTAGATTTTCATTTTAGATGGGAAA AAGGGGAAAACATCTTAATTAAGCGCGATTATGGCATAAGCGTTTTCATAATCTATTTAAAAATATTTATTGAAATAAAT TGAAAATAAGCTATATATAAGCATAAGTACTTTTTCAAAAGCTATTCTGAGTAACTTATGAAAATAAGCTCAAAACAGCA TAAGCTCTCCCAAACACTGGAATAAGAGCTTATACTGTCAGATAAGCTCAAATAAACTCTTCCAAACGGGGTTAATTAGT AAGTGGAAGTTATAGGTGAGGAGAGTAATATACTTATACTCTTTGTTTCTTACTTATATTGAGGTTGTTTTGATGATGGG AATTCAATGGGAATGACTATTCAGGTGGTGGTTGCAACTCATGCTTATGGAAATCGATCTGGGGTCAGATATATGACAGG AGGTCTCAAAGTATATTATGTTCCGTGGAGGCCGTTTGTTATGCAGAATACATTTCCAACCATCTATGGTTTACTGCCAA TTATAAGAACTATTCTTATTCGAGAAAGGATTACTGTGGTGCACGGGCATCAAGCCTTTTCGACGTTTTGTCATGAAGCT CTGATGCATGCGAGAACCATGGGATACAAGGTTGTGTTTACAGATCACTCGCTGTATGGTTTTTCTGATGGCGGAAGCAT CCACATGAACAAGGTGTTGCAGTTTACTCTGGCAGATGTGAGTCAAGCCATATGTGTTTCCCATACAAGCAAGGAAAACA CGGTGTTGCGGTCGGGTTTGCCCCCTGAGAAGGTTTTCATGGTGCCTAATGCTGTGGACACTGCCATGTTCAAGCCTGCA GTGGATCGTCCTAGCAGATCGGAAGTTATTATTGTTGTTATCAGTCGATTGGTTTATCGGAAGGGAGTAGATTTGCTTGT TGAAGTCATTCCAGAAGTATGTCGATTACATCCCAATGTGAGTTGATGAGACCATTGTTTGTCTTGCATAACTAGGAAAT TTGGATCTTGAGTTCTGTCTGACATGGAGGTATTAAGAGACTTTGGAAATGATTTTGGCTTTTTATAATTGTTCTCAAAG TTGCAAATTGTTGTTTGGTGATTTATACGCTTGTTCTGATGCTCTTTACACGTTATATATGCTTCTGAGAGAAAAAAACT AAGGGCTGCTTTCCAAAGCTGGAGCTGGCTTTCAAATATCTGCAATATCTAAAGAGCTTAAACCTTTTCTTCAACTCTAA TTTCATTCTTTCCTAATTTTGTGCTATCTATTAAATAACCTTTTTTGTAATTTTAGATACTTACAAAAGTTTACTAGGAA CTTTACCATCACTTATTTGATGGCACTTCAGAGAAGCTCTCATAAAAAAATCACACTAAATAAATAAATAAGTACACAAA TGACCTTCTGCTCCAGCTTATGAAAAGCCACAGCATTCCCTAATGAGTTCTTTCCACATTGCTTTCTGGTGATAATTGGA GAATTACCTGAACAAACTTGATGAAATAGTACATGGTTTTGTTTCATGTGGAAGGCTATGTCATGATGACCTTCTAGAAA ACTGATGAGGATCTTACAAATTTGGTCCTACTTTCATGATGTTGAAATTACAAGGGCACACAACAATTTTGCTAAAAGAA TAGTTTTGGTCATTTTGTGATTTGTTGTTTGTTATCTATGGCTTTTTGTCAGTTAACTTGAACATACACGAGAGATTATC TCATTTCAAAGTTTTTGCTTAAACCCTTTGTATGTTAGGTGCATCTTATTTAAACTTTTAACAAAATGCTGTAGGGTGAG CTTTATGAAAATAATGCATATTTTGTGATCTTTTTGGTTAACCTTAATGTCATATTGCTGAACTTAATCTTAATTTGAAA TCCTCAAGTTAGTATATGTCAGCACTTTGGTGTAAATTCTATATCTGTTGACAGATGGCACTGTCATTGTTATTACTTGT ATAGATATTCTTTTACAAGAGCCCCATTACATAGTGCATCTATAGGAATATGCAGTGTGACAGGAATGAATTGCAATTAG ATTGTTTAAACTGTGCACTTTCAAAGGCTTAACTAAGTTACATATCATTTGAAGGTTCGTTTCATCATTGGAGGTGATGG ACCTAAGCGTGTGCGGTTGGAAGAGATGAGAGAAAAACATTCTCTTCAAGATCGAGTTGATATGCTGGGAGCTGTACCAC ATGCACAAGTTCGATCGGTACTAATATCTGGGCATATCTTCTTAAATAGGTTCAGCTTCATTAATAAATTTCTCCTTGTG TTCAGCTTTGCGAATTGCAATGATGACTTTCTACCTGTTTGGATGCAAACCAAAGAGGACTTATTGGAGCTTATTTAGTG CATTTTCTAGTAGATAAGCTCCAATAGGCCTGTATCCAAACGGACTCTTTTTATAATTCAAGCTTCTAATTCTGGAAGTT GAGTAGTTCTAGAAGCTTAAGTTTCTTCTATTTTGAGATTTTGGGGCTCTCAATGTCAACACCAATTATGATGCCTGTTG TTTGCACTGTTTCAGTTCGTTGACAGAAGCTTTTTGTATAGCCATATTAGAGGCTGCTAGTTGTGGATTGTTAACAGTAA GCACACGTGTTGGAGGAGTTCCTGAGGTATGTGCAACAGATTTTTTTTCCATACCTATTCAGTCCAAGAAAAAAAAATCT TTTAATATAGTTTGTCTGAGATTTTTATTTATGAAATTTTGTTCCTTTCCATTTCAACAATTCTGGAACGCTGTCGTTAG AGGCCTTGATGTAGATTCATTTCTTTGCTACATAGGTTTTGCCAGATGACATGATTGTTTTGGCAGAACCTGATCCCAGT GACATGGTGCATGCAGTTCAAAAGGCTATATCTATGCTGCCAAATATTGATCCTCAAGTCATGCACAATCGAGTGAGTTT GTTGTTCAAATGGTCTTTTTCTGTTGCATTCATTGGAGAAACTAGCTCCATTTTTGTTTATGTATTGTCTGCAGGTGACA GAGCTCTACAACTGGAATGATGTTGCCAAAAGGACGGAAATTGTGTATGACCGTGCTTTGAAGTGCACCACTCAAAATCT ACTAGAACGTCTCTCACGGTACACTCTAAAAAATAAGAGCTTAATTTGATTGTAATGCTGACATATAGTTATTATTGTAA
CDS sequence (LotjaGi3g1v0166500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATCCCCAAAAGCATAGAATTTTAATGGTGTCTGATTTTTTCTACCCCAACTTCGGTGGTGTGGAGAATCACAT TTATTATCTCTCACAGTGCTTGCTCAAGTTAGGCCACAAGGTGGTGGTTGCAACTCATGCTTATGGAAATCGATCTGGGG TCAGATATATGACAGGAGGTCTCAAAGTATATTATGTTCCGTGGAGGCCGTTTGTTATGCAGAATACATTTCCAACCATC TATGGTTTACTGCCAATTATAAGAACTATTCTTATTCGAGAAAGGATTACTGTGGTGCACGGGCATCAAGCCTTTTCGAC GTTTTGTCATGAAGCTCTGATGCATGCGAGAACCATGGGATACAAGGTTGTGTTTACAGATCACTCGCTGTATGGTTTTT CTGATGGCGGAAGCATCCACATGAACAAGGTGTTGCAGTTTACTCTGGCAGATGTGAGTCAAGCCATATGTGTTTCCCAT ACAAGCAAGGAAAACACGGTGTTGCGGTCGGGTTTGCCCCCTGAGAAGGTTTTCATGGTGCCTAATGCTGTGGACACTGC CATGTTCAAGCCTGCAGTGGATCGTCCTAGCAGATCGGAAGTTATTATTGTTGTTATCAGTCGATTGGTTTATCGGAAGG GAGTAGATTTGCTTGTTGAAGTCATTCCAGAAGTATGTCGATTACATCCCAATGTTCGTTTCATCATTGGAGGTGATGGA CCTAAGCGTGTGCGGTTGGAAGAGATGAGAGAAAAACATTCTCTTCAAGATCGAGTTGATATGCTGGGAGCTGTACCACA TGCACAAGTTCGATCGGTACTAATATCTGGGCATATCTTCTTAAATAGTTCGTTGACAGAAGCTTTTTGTATAGCCATAT TAGAGGCTGCTAGTTGTGGATTGTTAACAGTAAGCACACGTGTTGGAGGAGTTCCTGAGGTTTTGCCAGATGACATGATT GTTTTGGCAGAACCTGATCCCAGTGACATGGTGCATGCAGTTCAAAAGGCTATATCTATGCTGCCAAATATTGATCCTCA AGTCATGCACAATCGAGTGACAGAGCTCTACAACTGGAATGATGTTGCCAAAAGGACGGAAATTGTGTATGACCGTGCTT TGAAGTGCACCACTCAAAATCTACTAGAACGTCTCTCACGGTACACTCTAAAAAATAAGAGCTTAATTTGA
Protein sequence (LotjaGi3g1v0166500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDPQKHRILMVSDFFYPNFGGVENHIYYLSQCLLKLGHKVVVATHAYGNRSGVRYMTGGLKVYYVPWRPFVMQNTFPTI YGLLPIIRTILIRERITVVHGHQAFSTFCHEALMHARTMGYKVVFTDHSLYGFSDGGSIHMNKVLQFTLADVSQAICVSH TSKENTVLRSGLPPEKVFMVPNAVDTAMFKPAVDRPSRSEVIIVVISRLVYRKGVDLLVEVIPEVCRLHPNVRFIIGGDG PKRVRLEEMREKHSLQDRVDMLGAVPHAQVRSVLISGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMI VLAEPDPSDMVHAVQKAISMLPNIDPQVMHNRVTELYNWNDVAKRTEIVYDRALKCTTQNLLERLSRYTLKNKSLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 389 | 385 | 2.9E-214 | – | |
| PANTHER | 5 | 389 | 385 | 2.9E-214 | – | |
| SUPERFAMILY | 8 | 374 | 367 | 1.76E-88 | – | |
| CDD | 8 | 388 | 381 | 0.0 | – | |
| Gene3D | 11 | 370 | 360 | 1.4E-71 | – | |
| Pfam | 46 | 135 | 90 | 2.6E-42 | ||
| Gene3D | 184 | 354 | 171 | 1.4E-71 | – | |
| Pfam | 200 | 339 | 140 | 1.4E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. |
Expression pattern of LotjaGi3g1v0166500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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