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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0167600 |
| Transcript ID | LotjaGi3g1v0167600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal-associated protein; TAIR: AT5G60800.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q9FJH5|HIP3_ARATH Heavy metal-associated isoprenylated plant protein 3; TrEMBL-Plants: tr|A0A0L9TE79|A0A0L9TE79_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0167600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22901739..22904603) extracted from Lotus japonicus Gifu genome v1.2.
TCCAAAATAAGTAGTAAAATGGTGGTAAAAAAAAGGGGGTCCACTAAAAATAGCACAGTTATTATTCTTGTTAACAGTAT AAATTCACCACTCACTTCCCTGGACTCATCAGTTACCATTCCATTTCACCACTACTCTCTGTAACCACCCTCTCCACTCC ACGATGGGTCAGGTTCGTTTCCCTTCACCTCTCTCCTTTATTCTCTTCTTTACATTGCATTGCATTCTTCATTGCTAATA CCAATTCCTCTAAATCATGTCGAAAAAGCAGAACAAAAACAAGAACAACAACAACAACGACAACAATCAAGGAAAGAAGA AGGAGGAGAAGAAGATAACACCCACCACCGTGGTGTTGAAAGTTGACATGCATTGCGACGGTTGCGCTTCCAAAATCGTT CGCTGCGTTCGCGGATTCCAAGGTATAATTTCCCCTTATTCAATCCATTTCATCAATCTCGTTTCAACGCTACATGATTT TTGGATTTTATTTATGTTTTTTGCGTTGATTGATTCGTAACCGAAGCGTTGAAATTGAACCTTCTTGTTGAAGGCGTGGA GAGCTTGACAGCCGACGGCGACGCCGGGAAGCTAACCGTCACCGGCATTGTCGACCCTGTCAAACTCCGGGACAAGCTCG CCGCCAAAACCAAGAAGAACGTCGAGCTCATCTCTCCACTTCCCAACAAGAAGGACAAGGAGAATCAGAATCAGAATCAA AACAATAAGAAATCTGAAGAGAAAAAACCAAAAGAGGTGATTCCATTTCACTTTTGTTTTCACATTCATTCAGTGCTCTG TTTCCTCTGTTTTTTGAGGTTTTGATTTTCGTGGTTGAATAATCGAGCAGCTTCCGGTGACGACGGCGGTGCTGAAGGTG GCGCTGCACTGTCAGGGTTGTATGGAGAGGATCAAGAAGATTGCGTTGAAGACGAAAGGTCGTTTCACCTTTCTGTTCAG TGTTCACTGATTCTGTTTCTCTCTGTTTTTTTGTTGTTGTTGACGGTTGTTTTTTGGTGGTGGGGACAGGGGTTTATGAG GTGGCGATTGATGAGGAGAAGGAGACAGTGACGGTGAAGGGAGCCATGGATGCGAAGGCAGTGGTGGCGAACTTGATGAA GAAGTTGAAGAGGAAGGTGGAGGTGGTTCAACCAAAGAAGGAGAAGGAAGGTGGTGGTGAAAAAGGAGACGGTGGTAAGA AGAAACAGAAGGGTGAGGAGGAGGAGGGTGGTGGCAAGGGGAAACCGGAGCATCAGAAGCAGAACAAGATGGTGGATTGG GCACCTGTTTATGGATATGGGCCTTACTGGTATGGCGGCGATGGTGATCACCACTACATGGGGCCATTGCACGCGCCGCA GATCTTCAGTGATGAGAATCCAAACGCGTGTTCTGTTATGTGAGTATGGAAAAAGGTTCATGAATCTGGCATTGCAGGAA TTGATTTTGCTTTTGGGCACAGTTCTTCTTTTTTTTGTCTCTTGTTAACACATAGGTGAATTGTGTGCTTGATAGAAAAA GGGTGGGTTTTGTTATCTGATTAACTGATATGATACTAATTTGAGTAGTGAGTGTTAGGTGTTATGGTGTCTACTGTCCA ATGCATGATGTAAATGACAAAAATGAAATATATTTCCCACTTTAGCAGCTACTTTTTGTTACAAATCAGAATCAAATTGA TTTGCAATTGCAAATTCTCATATGCTATGGCTATGCTATGATGTTGTTGGCTATATAACCTTTCATTGTACCTATATGAT TTGTATTTTTTGTCCTATTCATATCCATTCCTTCATGCCTGCCACATTCGTTAGTGGAACTTGAACCTGCCATGAGGATG AGGATGGAGGAAGGGAAATAGGGTCAGTTAGTACACTGCTCATTTTTTAACCTTTGCTACCAATTTTGTCCCTTTCCACC TACCCTTCAACTCTGCTACAAGAAATACTATTGGCTAATTTTGGGGTCTGATTATTGGTGCGTTGTTGAGGGGTTGAGGC AATGAGAAAACGTTTGGGGTATAAACAGTACTACTATAGCGATTCAGTTGCGTGGTCTGTTTCTGCATATAAAAGGCAAA GCAGGGTAATCAGGAATAAACCGTGGCACGGAAAAAAGTAACATAATTGGTACAAATTCGTAGAAGTGGGATTCTCATCT TGGCCACAACTTTGAATAATCATGGTGATATGATCGTTTCAAAATTTTCAGTCAAGGTGTAATTAATTAATTGATTGGAG TTTATGATCAAGTAACCAAAGTGATAAATAGGGACAATTTATGATGGTGTTTCGCATATAGAATCAATTTTGTTCACATA AATTCCCTAGGTAACCGAACAAGACCAGTTGATTCGTTGGTGGCATGATCAACTTTGAAAATTGGTATGGAAGATGATGA ATTTTAAGTAGATCCCCTTTAGAGGTGATGAATTTAATGCTTTTAGACAGTTATAGATGAAATTCAGGCATTGTCTCTGA GTAAAGATGTAGTTTTGGGGTGAACTCAATATCAGTTTTGGGGTGCATTCAATTGGCATTGTTACAATTGTTAATTTGTT ATTAATCTTCAGCCCCACTTTCTTAAGCTGGCATAACATAACTGTGGTCCTATTGAGCTGGGATCTTAAACTGTGATCTA TCTTCTCTCTGGCTGAAGTAATGCCCCAGCTTTGATGGCATTTATGAAACTTCAAGCTATACCCGGTTCCCACAATTGCA ATCCAAAACCACCGGTTAATTCACACTACTACTACATGAGAGTTTTGAATTTGATGTTTAATTACAACTTGTAATGTGGA ATAAGGGCCGTACATAAAAGGGTTTTGAATTTGGTACATTTGGTATATAATTTGTACTCTCTCCG
CDS sequence (LotjaGi3g1v0167600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAGAACAAAAACAAGAACAACAACAACAACGACAACAATCAAGGAAAGAAGAAGGAGGAGAAGAAGATAACACC CACCACCGTGGTGTTGAAAGTTGACATGCATTGCGACGGTTGCGCTTCCAAAATCGTTCGCTGCGTTCGCGGATTCCAAG GCGTGGAGAGCTTGACAGCCGACGGCGACGCCGGGAAGCTAACCGTCACCGGCATTGTCGACCCTGTCAAACTCCGGGAC AAGCTCGCCGCCAAAACCAAGAAGAACGTCGAGCTCATCTCTCCACTTCCCAACAAGAAGGACAAGGAGAATCAGAATCA GAATCAAAACAATAAGAAATCTGAAGAGAAAAAACCAAAAGAGCTTCCGGTGACGACGGCGGTGCTGAAGGTGGCGCTGC ACTGTCAGGGTTGTATGGAGAGGATCAAGAAGATTGCGTTGAAGACGAAAGGGGTTTATGAGGTGGCGATTGATGAGGAG AAGGAGACAGTGACGGTGAAGGGAGCCATGGATGCGAAGGCAGTGGTGGCGAACTTGATGAAGAAGTTGAAGAGGAAGGT GGAGGTGGTTCAACCAAAGAAGGAGAAGGAAGGTGGTGGTGAAAAAGGAGACGGTGGTAAGAAGAAACAGAAGGGTGAGG AGGAGGAGGGTGGTGGCAAGGGGAAACCGGAGCATCAGAAGCAGAACAAGATGGTGGATTGGGCACCTGTTTATGGATAT GGGCCTTACTGGTATGGCGGCGATGGTGATCACCACTACATGGGGCCATTGCACGCGCCGCAGATCTTCAGTGATGAGAA TCCAAACGCGTGTTCTGTTATGTGA
Protein sequence (LotjaGi3g1v0167600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQNKNKNNNNNDNNQGKKKEEKKITPTTVVLKVDMHCDGCASKIVRCVRGFQGVESLTADGDAGKLTVTGIVDPVKLRD KLAAKTKKNVELISPLPNKKDKENQNQNQNNKKSEEKKPKELPVTTAVLKVALHCQGCMERIKKIALKTKGVYEVAIDEE KETVTVKGAMDAKAVVANLMKKLKRKVEVVQPKKEKEGGGEKGDGGKKKQKGEEEEGGGKGKPEHQKQNKMVDWAPVYGY GPYWYGGDGDHHYMGPLHAPQIFSDENPNACSVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 4.1E-98 | – | |
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 274 | 274 | 4.1E-98 | – | |
| Gene3D | 26 | 94 | 69 | 4.5E-20 | – | |
| SUPERFAMILY | 26 | 88 | 63 | 1.7E-11 | ||
| CDD | 31 | 84 | 54 | 9.83679E-6 | ||
| Pfam | 32 | 86 | 55 | 2.3E-10 | ||
| MobiDBLite | 91 | 121 | 31 | - | – | |
| MobiDBLite | 105 | 121 | 17 | - | – | |
| Gene3D | 124 | 191 | 68 | 3.0E-14 | – | |
| SUPERFAMILY | 124 | 187 | 64 | 5.37E-10 | ||
| CDD | 128 | 168 | 41 | 1.27421E-4 | ||
| Pfam | 129 | 188 | 60 | 2.9E-9 | ||
| MobiDBLite | 190 | 229 | 40 | - | – | |
| MobiDBLite | 190 | 230 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0167600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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