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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0168900 |
| Transcript ID | LotjaGi3g1v0168900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein upstream of flc; TAIR: AT2G28150.1 UPSTREAM OF FLC protein (DUF966); Swiss-Prot: sp|Q9LX14|UFC_ARATH Protein UPSTREAM OF FLC; TrEMBL-Plants: tr|V7BW26|V7BW26_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0168900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23044738..23049234) extracted from Lotus japonicus Gifu genome v1.2.
GGTACAACAATCTCTGTTCTCTTCTAAGCTTCTCTTCACTTCCTGTCTTGTCTCCTTTTCACACTCTTCAACCTCTTTCA TTTCAAACTTCGCAAAACCTCCCCACTTTCTCCAAACCTCAACCCCTCTCACAATCTGCAACCCCTCCATAGATTCTCGT ACCACCTTCAACTGGGTACTTCGTTTTTCAATAAAGCTCTTTCCTTCAATAAGAATGCATATTATATGTTTGATACAAAT TCCCACCCAGAAACATTGCTGTTAAAGTTGTCTGTGGAAAGAGTTTCCATTTTTATTGGGAATGGAAGCAAGAGTGAAGA AGTACCGGCAACTAAGTCCGGAGAGGGCCAAAGTGTGGACGGAGAAGTCACCCAAGTATCACCAGCACCGCAAGGTGCCG GTGGTTTATTATCTTTGCCGGAATAGGCAGCTAGAGCATCCTCATTTCATGGAGGTTCCACTTTCATCACCTCATGGTTT ATCCTTGAGAGGTGAGAAAATCAACAACAACCAAAACCCAAAACTGTTTTTTTGTTTTTGATGTTTTAATGTTTGTGGGG TGTTTTGTTTTTTGAGGGATTGTTTGTTTTGTGTGCAGATGTGATTGATAAACTTGATGCTTTGAGAGGTAGAGGCATGG CTGCCATGTATTCATGGTCTTGTAAGAGGTCAGGAAGTTTTTCATATACCATCTTCTCTCCTATTTGTGTTCAATTTGAA TGGTGAGAAACATGAAGAGAAGGAAAAGCAAATGATTAGACTTGATAGCTTCTTAGTGATATTTGGAAATCCTTCTATTC CAAATTCAGAATCAATTTTGGGGAGAAGTTGTTTGAGTAGCTTCTAGGTCTCAGAATTTATTCTAATGATAAAAATGATG ATCCAAACACGCCATTGATTTCGCCATCCCTTGTTTATTTAAGTTCGATGAAGCAATCAAGATTGTTAAGTTTTGTGTTG TTTCAGACTGTGACTAAATTGTTTGTACTTTGTATTGAGTTTTGACCTTGTATATTTATGTATTTTGTTGATTATGTAAT GTAATTCAGAAGCTACAAGAACGGATTTGTGTGGCATGATCTCTCTGAAGATGATATAATTCTACCTGCACATGGAAATG AGTATGTCCTCAAAGGTTCAGAGCTATTTCACGAATCGAATTCAGGTCAAGAATTTAAAATGAAGCTTGTATTGTTTATC TTATTAATGTTGTGTTTTTGTAGGCCCTGAATGAAATATTAATCTTTGTGGATTTTGCCTTACAGATGGTTTCAGTCCCA GTAACAATGTGAAAACACAGAGGCTGAAGAAGTTACCGGAGCCAGTTTCTTCTAGGAGAAATGATGAATCTTCCTCCTCT TCTAGCATGAATGAGAAAGAGACTAGAAACTCCGATGAAGATGATCCTTCCCCGGGAAAACGCGCTGGTTCCTCCGATGT TTCTCCAGAATCTAGAGCTGGAAACAGAGGTTCTCTAAGTTCACAATTGACAGATGACAAAATCCACAAGACTGATGGGT TTGCAGATGCTTCAACCCAAACAGAAGTCAATATTAGTGGACACGAAATCCAGAAAACTTGTACTAGGGGTGTATCAACT GAGGATGTATCATTAGAACCTGAAATCGAAGAAACATGTCAAACCCAAGTGCCACAAGTCAAAGATAATTCAGAAATCTG TAGCGATACTGTTTCTCCACCTCTCTCAATTTCTAGTCCATCCTCTTCTGGAGGGAAGACTGAAACTTTAGAATCCCTGA TTAGAGCCGATGCGAGTAAAATGAACAGCTTTAGGATCCTACAAGGGGAGAGCATTGCAATGCAGACCAACACAAGGACG AAGGCCTCAAATTTGCTGATGCAACTGATCTCGTGCGGATCTTTATCAGTGAAAAACCACAGTTTGGACCTTATTCCTTC TTCCTATAAGGCGAGGTTTTCACATTCAAAATTCCCCTCCCCATTGTTCTCAACATCTGCTATGTTGGGGGAATTTGATT ACCTAGCAGAGAATCCAAAGGTGATGGGCCACAGATCGGAAGACAAAGAATGTTTTAGTGGGAGCTTAGTTGAGTCTAAA ATGCTGAAGGAAGAGGATGGACATAATGTTCAGAAACGCTCTTCTTCTTTCAGTGATGAGAGGTAGGACTCATTGTTGGC ATATAGTCCTTCTTTACTGTTAGATTAGACTAAATAACCAGATAGGTGGAAAATGCTTGAATTTGGTGTTAGAATGCTTC TGCTACTATTAGTTTTTCTGCCAGACTGAATTTTGTCCCGAGTGAGCTAAATTCTTCATTTGATGAATTATTTCATTATT ATAAACACAACAATCCACTGAGCTGGTTGCTATTGCCAGTTCAAAATTCAGATGCAATGTCTAAACTTTGCTGCTCACTT TTTTATTTTTCGTATCCTTTCATTGATTGTAAGATTTAAACAATATCACTTAAGCACTGATTTTAGATAAAAAAAAATCA GTTGAAGCTCTTCTATCCCTCCAATCACTTTGTCAGCACTGATTTTGTTTTAAGGTAAAAGATTCTAAAATTATGCCCTG ACACTGCCTTTATTTCTTTTGCAAGTTGCTTTTTAAAGCTAAACATTATTTAAAGGAATATTGGAATATTAGCATGTTTG TATCTTCAAGATCAATTCTGACACTTAAAAGCTACTTGCTTCTCCTCAAATTTGATTTTGGCTTTAGAATCTATAGTAGA AAATTTTCTAAACATGCAAGTGTTGCCATATGCTTGTTTAGATCTTCATTAATGATTGTATGACAAGATCTCACAAGGAA ACAGAAGCTTCAAAAGCCTTGAAGAAGGGGCTTTATTTCTTTATGATGAAGCTTTCATTAGAACATCCAATTTCAGACTG TAACCCACTCCACAGTGGGGGAATAAATTAAAGTAATAAAAAATAAAAGCCAAAGGCTGGGCAATGGGGATTTGAATCTT GTCGTGGCTTCTTTTTTTAACCTGTTTCATGTTGTCATGTGGACTAGTAAAGATTATTAGCATTTATCATCCAGGTTTTA TAGCTGTCTTCCTGAAACAATGTTGAGAATAATATCATGTTTTGATGACATGTGCTGTGTTTGGTTTACATGGAAAGTCC TTCTAGTTTAAGTGAAATCCCTCTTTCCTAAGCATGAAACATGAAAGGAGCGTTCAAGCTCCATTAGCAGTGCATTTAAC TTGATCCAAATACAAACACACTCGCAGTCCGCAACCCAAAGAGTTGATGTTGAAACTCCATAGGAATAAGTAGTAACTTG TATATTATTGCACTTTAAGGATTTCTTTTCCTCAATAATTGTCCAGCCTTTCATCTTAATGTGATCAATCTTGCTTTATT TAGAGGTTTATCTTGTATTCTTATATCATATGTTGCTAAACATGGCTTGGGATCAAGAATTATTGTGGCTACATTTGTGG TTTCATGTTTTATAGTTTTGTAATTGATTTTGATTGTCATGTGATAGGATAGGAACATGTTAATCATCAAATCCTAGCCA ATACTTCATGCATAACAAAACCTTAGCACAAATGTGCAGGACATATCAAGAGCTGAAATCACAAGAAATAGCGGAATCAT CATCCTTAGGAAATTCTAAACGCATTTCATTGAAGAAACAGCCACCAATTGAATCAATGAGATCTCCTGTTTCTGATGGA TCAAGAAGAAACTCCATGGATAGAATTGGTGACTTGTTCGGCAGCAAAAGAATCACTGAACCTTCATCAAAGAAAATTCA ATCTAAGAGTATAAACTCATTTGGTGAAGTTGAGAAGGTGATCAGAATAGAGGAAAGTTAAGTACGACTTGATTTTGTTT CACCTGATTTTTGCTTCAGTTGCCCTTCCGTTTTCAGTCATTGGTTGTTGACAAGTTTGATTTTAACTCAACAGGCTTGC TTCCGGAGCTCGAGTTATAATCCAATCAAAAACCATCTTGTGACACAGCTTCCAATAGCTATCAGAAATCATGTTTCTAG TATATTTACATCAATTTCTATTTTCTTAGAATCAATAGCATGTTTGGAATGATTTCTCTGAATCAATTATGAAACTGAGA AGCTGCCCATGTCAGAATTGATTCTGGAAAAGTCGAAGGATTTTCTCATTTTCAAACATGCTGGTAGGGAAATTGCTACA TTTTAGCTTTTGTTTGAATGCAACATGATAGTATATATCTACACATATTCATGTGATATATTCTGTAAATCTACGAAGTG AAAATGTAATGACAGGTTACTCACTGCAAAGGGGGGCTAATAGTGCCGGTGTGGTCCCTATGGTCCATTACTCTCTGTAA ATTGAATCTTATGTGCTGGTTACAAGGACTGCTCTGAAATGAAGTGTTATTGCTCAGTTTATTTTGTAAATATAGCTGCT ATTTCCTTTTGCACCCGCCGCTTTTGTTTGTCTCAAATTGGTGCCTGCTACTTTGTTTGCATCTCCAAGGTTAAAAGGTG CTGAAAAAGTAAAGTAC
CDS sequence (LotjaGi3g1v0168900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAAGAGTGAAGAAGTACCGGCAACTAAGTCCGGAGAGGGCCAAAGTGTGGACGGAGAAGTCACCCAAGTATCA CCAGCACCGCAAGGTGCCGGTGGTTTATTATCTTTGCCGGAATAGGCAGCTAGAGCATCCTCATTTCATGGAGGTTCCAC TTTCATCACCTCATGGTTTATCCTTGAGAGATGTGATTGATAAACTTGATGCTTTGAGAGGTAGAGGCATGGCTGCCATG TATTCATGGTCTTGTAAGAGAAGCTACAAGAACGGATTTGTGTGGCATGATCTCTCTGAAGATGATATAATTCTACCTGC ACATGGAAATGAGTATGTCCTCAAAGGTTCAGAGCTATTTCACGAATCGAATTCAGATGGTTTCAGTCCCAGTAACAATG TGAAAACACAGAGGCTGAAGAAGTTACCGGAGCCAGTTTCTTCTAGGAGAAATGATGAATCTTCCTCCTCTTCTAGCATG AATGAGAAAGAGACTAGAAACTCCGATGAAGATGATCCTTCCCCGGGAAAACGCGCTGGTTCCTCCGATGTTTCTCCAGA ATCTAGAGCTGGAAACAGAGGTTCTCTAAGTTCACAATTGACAGATGACAAAATCCACAAGACTGATGGGTTTGCAGATG CTTCAACCCAAACAGAAGTCAATATTAGTGGACACGAAATCCAGAAAACTTGTACTAGGGGTGTATCAACTGAGGATGTA TCATTAGAACCTGAAATCGAAGAAACATGTCAAACCCAAGTGCCACAAGTCAAAGATAATTCAGAAATCTGTAGCGATAC TGTTTCTCCACCTCTCTCAATTTCTAGTCCATCCTCTTCTGGAGGGAAGACTGAAACTTTAGAATCCCTGATTAGAGCCG ATGCGAGTAAAATGAACAGCTTTAGGATCCTACAAGGGGAGAGCATTGCAATGCAGACCAACACAAGGACGAAGGCCTCA AATTTGCTGATGCAACTGATCTCGTGCGGATCTTTATCAGTGAAAAACCACAGTTTGGACCTTATTCCTTCTTCCTATAA GGCGAGGTTTTCACATTCAAAATTCCCCTCCCCATTGTTCTCAACATCTGCTATGTTGGGGGAATTTGATTACCTAGCAG AGAATCCAAAGGTGATGGGCCACAGATCGGAAGACAAAGAATGTTTTAGTGGGAGCTTAGTTGAGTCTAAAATGCTGAAG GAAGAGGATGGACATAATGTTCAGAAACGCTCTTCTTCTTTCAGTGATGAGAGGACATATCAAGAGCTGAAATCACAAGA AATAGCGGAATCATCATCCTTAGGAAATTCTAAACGCATTTCATTGAAGAAACAGCCACCAATTGAATCAATGAGATCTC CTGTTTCTGATGGATCAAGAAGAAACTCCATGGATAGAATTGGTGACTTGTTCGGCAGCAAAAGAATCACTGAACCTTCA TCAAAGAAAATTCAATCTAAGAGTATAAACTCATTTGGTGAAGTTGAGAAGGTGATCAGAATAGAGGAAAGCTTGCTTCC GGAGCTCGAGTTATAA
Protein sequence (LotjaGi3g1v0168900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEARVKKYRQLSPERAKVWTEKSPKYHQHRKVPVVYYLCRNRQLEHPHFMEVPLSSPHGLSLRDVIDKLDALRGRGMAAM YSWSCKRSYKNGFVWHDLSEDDIILPAHGNEYVLKGSELFHESNSDGFSPSNNVKTQRLKKLPEPVSSRRNDESSSSSSM NEKETRNSDEDDPSPGKRAGSSDVSPESRAGNRGSLSSQLTDDKIHKTDGFADASTQTEVNISGHEIQKTCTRGVSTEDV SLEPEIEETCQTQVPQVKDNSEICSDTVSPPLSISSPSSSGGKTETLESLIRADASKMNSFRILQGESIAMQTNTRTKAS NLLMQLISCGSLSVKNHSLDLIPSSYKARFSHSKFPSPLFSTSAMLGEFDYLAENPKVMGHRSEDKECFSGSLVESKMLK EEDGHNVQKRSSSFSDERTYQELKSQEIAESSSLGNSKRISLKKQPPIESMRSPVSDGSRRNSMDRIGDLFGSKRITEPS SKKIQSKSINSFGEVEKVIRIEESLLPELEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 465 | 465 | 7.9E-128 | ||
| PANTHER | 4 | 506 | 503 | 1.3E-158 | ||
| PANTHER | 4 | 506 | 503 | 1.3E-158 | – | |
| Pfam | 32 | 419 | 388 | 1.2E-128 | ||
| MobiDBLite | 123 | 138 | 16 | - | – | |
| MobiDBLite | 123 | 205 | 83 | - | – | |
| MobiDBLite | 156 | 177 | 22 | - | – | |
| MobiDBLite | 185 | 199 | 15 | - | – | |
| MobiDBLite | 262 | 284 | 23 | - | – | |
| MobiDBLite | 426 | 463 | 38 | - | – | |
| MobiDBLite | 426 | 440 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0168900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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