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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0169000 |
| Transcript ID | LotjaGi3g1v0169000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix (BHLH) Transcription Factor; TAIR: AT2G28160.1 FER-like regulator of iron uptake; Swiss-Prot: sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR; TrEMBL-Plants: tr|I3S8V6|I3S8V6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0169000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23067781..23070175) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGAACTTATTCGATTCACACCAAACCTATTTTATTATAATAATCATGCCAACCTTCTATATATTACAATTAGTCCT CTAACTGTCCCCAAGTTCCAACTATATGGATGCAATGGATGCTCCCCAGGACACACTTGGGTACATCAATAACGATTTTG AGCTGCATGACTTCATTGACGATCCAAACTTCGATCAGTTTATCAATTTGATTCGAGGGGAGAATGAAGATGCCATATGC AACTTCGGTTCTGATTTTATCAACGATTGTTTCATTGATAATAATCAGCTTCTTCCAAATCATGATGGAATCCCGTTTGG TCCGAGCAATAATAGTAATTTTGTGAATGTCTATGATCCAATAAGCTTCTCTTGTTTTGATGGGGTGGTGAAGGGAGAAG GAGAAGAGAATGATGGAGGAGATTCTTCCACTACGACAACCACCACCACCAATTCTGGGAGTGGGAGTGCTGATGATGAT GCCCAACCGAAGGCGAAAAGCGATAGGTCCAAGACTCTCATTTGTGAGAGGAGAAGGAGAGGTAGAATGAAGGAGAAGCT TTATGCTTTGCGTTCTTTGGTTCCAAACATAACTAAGGTACTTGTCCCTGTCTCAATTAGATTAATTTAGAAGTAAAAGT GTTATGAAGTTAATATTTCTTAATGAAAAGTGAAGGCATAACGATGGGGCATAAAGCCTAGGGGCTAAGGTAAAAGGAAA ATGCTTTTAAGAAGTTTAACAAAAACAAACTTAATGTGAGAACGTATTAAGAAGTTCAACTAAATCTGATTTATGCTTTA AATTTGAGAATTATGAAATGTAACCGATATTAGTATATGATATATATCCACAGATGGATAAGGCCTCTATAATTGGAGAT GCAGTTTCATACGTGCATGACCTTCAAGCACAAGCAAAGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATT AGTGTCTGAAAATTACCAAGGATCAATTAACAACCGCATTAAGAATGTTCAAGTCACCAACAACAACAATCCAATCAGCA AGAAAATCATGCAGGTTTGTTTAATAAACAAGAATCATGTCAACTCTTTATTTCAGTTTTTCTCTTATATACCCTGGAAC AAGTTCTTATGTCCCTGAATGATGTGTCAATTTTCTGCCACATCAATGAAACTTGCAATGTCAATTAAAAAATACACCCT GGACGGAACAGTGGTAATTTTTAATTGACATTGCAATATTTCATTGAGGAGACAGAGAATGAGACACGGGAAAAAATTCA TTAATCCACACTCGCTACATGATTTGTTTATGTTTCTTTGTAGGTGGACATGTTTCAAGTGGAGGAGAGAGGGTATTATG TGAAAATAGTGTGCAATAAAGGAGCAGGGGTGGCTGTTTCTCTGTACAGAGCTATTGAGTCTCTTGCAGGATTCAATGTT CGCAATACAAACTTAGCCACAGTTTGTGACAGTTTTGTGCTTACATTTACAATGAATGTGAGTTATCACTTCCATCCAAT TCAATCTTTATGTTTTTGTTGAAATATAAGTGATTGTTTTTGCTTAAGGATTTAGTCATTGGTGTGTTCAAAACAGGTGA AAGGTTCTGAGCCAGAAATTAACCTTCCTAATTTGAAGCTGTGGGTGACCGGAGCTCTTCTGAACCAAGGCTTTGAATTC ATGGCATCCTTTGATGTTTGAATCACCTGCAGCCTGCATGCAGCATGCATGAAGTTTGGTTTGAAGGATGCATTCGAGCA ATTATGATGATGAGGCATGAAAGACATTATGTGATTTTAGTGGTGTAATATAAACTTATTCACATGTCTTCACTCAATAG CGTAAAACTTTTAGAAGAGTTGGTTTGTAACATAGCATTAGAGTTCTATGACTAAGTGATATCAAGTTCACTTTATCATA TTCTAATAAAAAAGTTAAATTTTAGGAAAGGTAGGTAGGTATGTGTTCTTTTAATGTATAAGGCAAATGTATTAAGGACA AAAGGGTGCTTGAAAGTTGAAACCATAAACCATAATACAGAATCATCATACAAGAATCAAGGATGGAACAATTGATCCCT CCTATTTTGACACACACAGGGACTAAAAGTCTAAAACTAAATGGTATTGACTCCTACAATTAATCCTCAACCCCTTAAAG TGACTGACAAATGCAGCAGCCCAAACAAGAACTAGTTGTTGGTAAAGTAATAGGACTGTAAGAACTAATCAAAACTAAAC CTCACAATGGAATCTATATGTAAATACACGTTGCCCTTCAATTTTTTCTTACAATCCTAATTTGTGTAGACCATACAACA ATACTCGTGTACATCATTTTTCTCTCACTTTCTTCGTGTCACATCACATCAATTAGTTTTCTTTTTTTTTTCTCC
CDS sequence (LotjaGi3g1v0169000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCAATGGATGCTCCCCAGGACACACTTGGGTACATCAATAACGATTTTGAGCTGCATGACTTCATTGACGATCC AAACTTCGATCAGTTTATCAATTTGATTCGAGGGGAGAATGAAGATGCCATATGCAACTTCGGTTCTGATTTTATCAACG ATTGTTTCATTGATAATAATCAGCTTCTTCCAAATCATGATGGAATCCCGTTTGGTCCGAGCAATAATAGTAATTTTGTG AATGTCTATGATCCAATAAGCTTCTCTTGTTTTGATGGGGTGGTGAAGGGAGAAGGAGAAGAGAATGATGGAGGAGATTC TTCCACTACGACAACCACCACCACCAATTCTGGGAGTGGGAGTGCTGATGATGATGCCCAACCGAAGGCGAAAAGCGATA GGTCCAAGACTCTCATTTGTGAGAGGAGAAGGAGAGGTAGAATGAAGGAGAAGCTTTATGCTTTGCGTTCTTTGGTTCCA AACATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTTTCATACGTGCATGACCTTCAAGCACAAGCAAAGAA GCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTACCAAGGATCAATTAACAACCGCATTA AGAATGTTCAAGTCACCAACAACAACAATCCAATCAGCAAGAAAATCATGCAGGTGGACATGTTTCAAGTGGAGGAGAGA GGGTATTATGTGAAAATAGTGTGCAATAAAGGAGCAGGGGTGGCTGTTTCTCTGTACAGAGCTATTGAGTCTCTTGCAGG ATTCAATGTTCGCAATACAAACTTAGCCACAGTTTGTGACAGTTTTGTGCTTACATTTACAATGAATGTGAAAGGTTCTG AGCCAGAAATTAACCTTCCTAATTTGAAGCTGTGGGTGACCGGAGCTCTTCTGAACCAAGGCTTTGAATTCATGGCATCC TTTGATGTTTGA
Protein sequence (LotjaGi3g1v0169000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAMDAPQDTLGYINNDFELHDFIDDPNFDQFINLIRGENEDAICNFGSDFINDCFIDNNQLLPNHDGIPFGPSNNSNFV NVYDPISFSCFDGVVKGEGEENDGGDSSTTTTTTTNSGSGSADDDAQPKAKSDRSKTLICERRRRGRMKEKLYALRSLVP NITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEER GYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNVKGSEPEINLPNLKLWVTGALLNQGFEFMAS FDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 318 | 314 | 3.8E-154 | – | |
| PANTHER | 5 | 318 | 314 | 3.8E-154 | – | |
| MobiDBLite | 99 | 136 | 38 | - | – | |
| MobiDBLite | 104 | 123 | 20 | - | – | |
| Gene3D | 122 | 197 | 76 | 4.6E-15 | ||
| CDD | 131 | 184 | 54 | 1.53646E-13 | ||
| SUPERFAMILY | 131 | 197 | 67 | 7.85E-17 | ||
| ProSiteProfiles | 132 | 181 | 50 | 15.262 | ||
| SMART | 138 | 187 | 50 | 3.1E-14 | ||
| Pfam | 139 | 182 | 44 | 2.6E-9 | ||
| Coils | 178 | 198 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0169000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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