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LotjaGi3g1v0169300.1

Overview

Field Value
Gene ID LotjaGi3g1v0169300
Transcript ID LotjaGi3g1v0169300.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger family protein; TAIR: AT2G28200.1 C2H2-type zinc finger family protein; Swiss-Prot: sp|Q681X4|ZAT5_ARATH Zinc finger protein ZAT5; TrEMBL-Plants: tr|V7BYN6|V7BYN6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0169300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:23095128..23096741) extracted from Lotus japonicus Gifu genome v1.2.

TATAATACTTCTGTTCACAGTTCACACACTCTTCATCCATATAAATTACACATGTGTGGGTCTCTTTCTCTCTACTACTA CTACTAAACTTGCCTTTCTTCCTTTCTTTCTATCTTCCATATTGGTAGTGAGTCACTGTTTCATTGTCCTGCCCATGATG TTGTCTAAAATGGACATCAATGAAGGCATAAGCAAAAGCATAGAGGAGTTACATGTTACCACCGCGAAGGGGAAGCGCAC GAAGCGGCTGAGGCCGTGGTCCCCTTGCGCGGTCGCCGGGGCCGCCGCCGTGACTTCTAGCAGCTCAAGTGGCGCCGCCG ACTCGTCCTCCACGATTGAAGGCGCTGATCAAGAAGAAGAAGATATGGCTAACTGCTTGATTCTGCTAGCCCAAGGAAGA GGAGAAGAAAGAGTCATCATCCCTCACCATAATAAGCAGAAGGAAGGTGAGATGGAGAATCATGTTGGTGATGATAACAA GAGTATGATGATGATGACAGAGAAAACCACCAAAATTGGTTTCTACGTTTATGAGTGCAAAACATGCAACCGAACATTCC CTTCGTTTCAAGCGCTGGGTGGGCACAGAGCCAGTCACAAGAAGCCTAAAGCGACGGTGACACAAGAGGAAAAGAAATCG CCACCACCACCACCACCAGCACCGCGGCTAACCACGAGCACTAGTACTCGTGATTTTGAGGAAACAAGGCAAACTCATGT CCCACATCGAGTTTCACTTGAATTGGGTGTCAATTTACATACCAATAAATCCACCAATTCCAAGTTAAAGATTCACGAGT GTTCCATTTGCGGGGCGGAATTCACATCCGGCCAAGCATTGGGTGGCCACATGAGGAGGCACAGGGCGGTGCAGGCGGCG GCGACGGTGGCGGCGTCTACCGGCAACAACAGCGCTGCCGTTCAGATTAAGCCACGGATTGTTCTGGAATTGGATCTCAA CCTTCCGGCGCCGGAAGACGATCTCCGGGACTCGGCGTTTCAGATTCCGGCGACGGCGACGCAGAAGTCCATGGTGCTCT CGGCTGCTCCGGCTTTGGTGGGTTGCCATTATTAGGCCAGGGTGGGAATTGGATTTTAAATTTTTAAGAAATTTATATTA TTATTTGATCAATGATCATTGTGAATTATTATTAGCTTTACTTTAATTTTACAATTATTATTCCTAATTATTATGGATTC TTTGGAATTGTTATTTTTTCTGGGTTTAATAATAATTTCTTATTGGATATGATCTGCTTGTTGAAGTTTTTGGAATACTT TGAGTAAGTAAGTGGTTAGTGTTCTTGGTTGCCTTTCCTTCACGAAAAGTGAGTCATGTAGATAGCATCTTTATTTTCTT CCCTTTTTTCCCTTCTTTTTTCAATTTCAATGTTTTGGGTCTGTATCTAGTTCTGGTTCAATTTGGCTGTTTCTTTAATT AATGGGAGAACAATGGGTAAGAATTTTTAATGAACTAATTATCATCAAAGATTGAACTAGTAGATAAAATACACATCAAT GATTGTATTTCTCACAAGGATGAAGGATGATGGGTTCGGGAACCCACCAGAGGCTAACATCTCTATTAATTGACAACGTG CATTAAGTGTGTGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0169300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGTTGTCTAAAATGGACATCAATGAAGGCATAAGCAAAAGCATAGAGGAGTTACATGTTACCACCGCGAAGGGGAA GCGCACGAAGCGGCTGAGGCCGTGGTCCCCTTGCGCGGTCGCCGGGGCCGCCGCCGTGACTTCTAGCAGCTCAAGTGGCG CCGCCGACTCGTCCTCCACGATTGAAGGCGCTGATCAAGAAGAAGAAGATATGGCTAACTGCTTGATTCTGCTAGCCCAA GGAAGAGGAGAAGAAAGAGTCATCATCCCTCACCATAATAAGCAGAAGGAAGGTGAGATGGAGAATCATGTTGGTGATGA TAACAAGAGTATGATGATGATGACAGAGAAAACCACCAAAATTGGTTTCTACGTTTATGAGTGCAAAACATGCAACCGAA CATTCCCTTCGTTTCAAGCGCTGGGTGGGCACAGAGCCAGTCACAAGAAGCCTAAAGCGACGGTGACACAAGAGGAAAAG AAATCGCCACCACCACCACCACCAGCACCGCGGCTAACCACGAGCACTAGTACTCGTGATTTTGAGGAAACAAGGCAAAC TCATGTCCCACATCGAGTTTCACTTGAATTGGGTGTCAATTTACATACCAATAAATCCACCAATTCCAAGTTAAAGATTC ACGAGTGTTCCATTTGCGGGGCGGAATTCACATCCGGCCAAGCATTGGGTGGCCACATGAGGAGGCACAGGGCGGTGCAG GCGGCGGCGACGGTGGCGGCGTCTACCGGCAACAACAGCGCTGCCGTTCAGATTAAGCCACGGATTGTTCTGGAATTGGA TCTCAACCTTCCGGCGCCGGAAGACGATCTCCGGGACTCGGCGTTTCAGATTCCGGCGACGGCGACGCAGAAGTCCATGG TGCTCTCGGCTGCTCCGGCTTTGGTGGGTTGCCATTATTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0169300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMLSKMDINEGISKSIEELHVTTAKGKRTKRLRPWSPCAVAGAAAVTSSSSSGAADSSSTIEGADQEEEDMANCLILLAQ GRGEERVIIPHHNKQKEGEMENHVGDDNKSMMMMTEKTTKIGFYVYECKTCNRTFPSFQALGGHRASHKKPKATVTQEEK KSPPPPPPAPRLTTSTSTRDFEETRQTHVPHRVSLELGVNLHTNKSTNSKLKIHECSICGAEFTSGQALGGHMRRHRAVQ AAATVAASTGNNSAAVQIKPRIVLELDLNLPAPEDDLRDSAFQIPATATQKSMVLSAAPALVGCHY
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR26374
30 306 277 7.6E-81 –
PANTHER
PTHR26374:SF332
30 306 277 7.6E-81 –
MobiDBLite
mobidb-lite
47 67 21 - –
MobiDBLite
mobidb-lite
47 61 15 - –
Gene3D
G3DSA:3.30.160.60
102 166 65 5.1E-6 –
Pfam
PF13912
125 150 26 5.7E-13 –
SUPERFAMILY
SSF57667
125 236 112 2.11E-8
IPR036236
ProSiteProfiles
PS50157
126 153 28 10.637
IPR013087
SMART
SM00355
126 148 23 0.052
IPR013087
ProSitePatterns
PS00028
128 148 21 -
IPR013087
MobiDBLite
mobidb-lite
142 188 47 - –
Gene3D
G3DSA:3.30.160.60
195 259 65 8.9E-6 –
Pfam
PF13912
214 238 25 1.4E-12 –
SMART
SM00355
214 236 23 0.01
IPR013087
ProSiteProfiles
PS50157
214 241 28 10.097
IPR013087
ProSitePatterns
PS00028
216 236 21 -
IPR013087

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0169300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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