Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0169500 |
| Transcript ID | LotjaGi3g1v0169500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT5G22890.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1; TrEMBL-Plants: tr|V7BYJ4|V7BYJ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0169500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23107423..23109500) extracted from Lotus japonicus Gifu genome v1.2.
GTTGACTTCTGAATCTCTACATTTCGTGCAGTATCATCCCACATAAGTATATATCAGTGTACTTTGCTTCTTGCCATTTC ATATAAAGGAAACTGGCATATATATATGCTCAATATAAACAATATCTTTCATTGGACCAAGAAATTATTCAGAACCAATC TTCAGTATAGTAGCATTGGAAGATCCAAGCAACATTGACAATGATTTCAAGGCCCACATCCAGCTTCCAAAGTGTCCATC AGGGGCTTCAAATGTTTCCTCCCACCCAAGATTTGGTTTCACCCTCTGTTGAAATGATCTCAGGCTCAGGCTCTTCACCC TCAACAAGCTCCCTCCTTTTCAACCTCTCTGTTCTCAAAGAAAAGCTGAATCAGGTGCAAACCCTGGTGGGTATCATTCT CTCCCCAAATCAAACCCTTCCAGAGTCAACTTCATTAGCCATCTCCAGCATGAACACCACAATTCAAGAAATCATAGTCA CTGCCACCTCAATGATGTTCGCCTGCCAACACTTGGCTCTCACTACTGCTACTTGCACCACCAACAACCAATTGCACCAC CATCAGCAATCTAATCATGATCACAACAAGGTACCTCCCTCAAATTTTGGCAATTACAGAGATGTCCTTAGTAACATAGG AACAGATATTAGATCAGGCCAGAGTTTATTTTCCAATACTGAGTCAGAGGCACTGGATAGCTGGTTTGGTGAAAGCTACA ACAACAATAATAACAATAGTAATGTTAATGATGATGATAAAAGTGTTGCAATTAGTGAAAGCAATAATTGTAAGGAAGCA ATAATGTCTCCAGGGGATGGACATGAACCTGTTGATACTGATGATAATGATATAATTGAATTGGATGTTGCTGATTTGTT GGCTAAGTACACGCATTATTGCCATGTTTGCGGGAAAGGGTTTAAGCGCGATGCAAATTTGAGGATGCACATGAGAGCTC ATGGGGATGAGTACAAGACCAGTGCTGCATTGAGTAAACCAATTATCAAACACAAGGTGGGCAGTGAGAACTCTTTGATG AGTGTGAAGCCTAAAAAGTATTCATGTCCCCAATTAGGGTGCAGGTGGAACCAGAAGCATGCCAAGTTTCAAGCTTTGAA GTCCATGATTTGTGCTAAGAATCATTACAAGAGGAGCCACTGCCCCAAAATGTATGTTTGCAAGAGGTGCAATCAGAAGC AGTTCTCTGTGCTTTCAGATTTGAGGACACATGAGAAGCATTGTGGGGATCTCAAGTGGCAGTGTTCTTGTGGCACCACT TTTTCTAGGAAAGATAAGCTTATGGGCCATGTTGCTATGTTTGTGGGGCACCACCCAGCTGCTATGAATAGCTTTTCATG TTCAGGGAAAATAGAGAAGCAGGGATTGCAAATGCAGAATGATGGTAGTTCAAGATGAAGGATACACGTTGGGAAACCAT GGTGGCTAAAATCATGATGGACAGCAGCAACCTCATTTACCTTTCATGGCTGTCCACCATGATTTTGATTTCACCGTGAA TTTTCACTGAGATTATGTGTTTTATATGATTGGTTATGAAGTGGTGCTCTCCTTCAGACTGTATACATTTTCAGACAGTG CAATATATGCTTCACAAGAAAAAGTACCTAATTGATTCTACATTGCTCCTTTCTAGGTGCAGCTTCTGTCTTCCAACATA CTCTTCTTGATAGTAAATAACTTGATGATTTGCTCCAATAGTTTGTGGCGCTGGCCATTGGCATGGCATGACAGTACTGT GCAAGAGGAATTGTATTCAGGAAAATGTTTGGTTGACAAATTATATGAGAGAAAAATGGTGAATGTGATGTAGGATATGA TGTGGTAGAAATAAAGACATAAATAGCTAGGGAAATTAGGTGTGGTGGCTATTGGCATGCATGGTATGTTTAAAATTCGA GATCGTTGTATTTATGCTAAAATTTTGTACAAAAGTTGGATTGGTGTTCTCTTTTGTGTATCATATACAAATCACCCGTT GTATATTTAAATTGATGAGTTGCATTCTGCTTGAAAGAATTATAAGCGTACCCATGGGACGTATAATTGATAATGTTG
CDS sequence (LotjaGi3g1v0169500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCAAGGCCCACATCCAGCTTCCAAAGTGTCCATCAGGGGCTTCAAATGTTTCCTCCCACCCAAGATTTGGTTTC ACCCTCTGTTGAAATGATCTCAGGCTCAGGCTCTTCACCCTCAACAAGCTCCCTCCTTTTCAACCTCTCTGTTCTCAAAG AAAAGCTGAATCAGGTGCAAACCCTGGTGGGTATCATTCTCTCCCCAAATCAAACCCTTCCAGAGTCAACTTCATTAGCC ATCTCCAGCATGAACACCACAATTCAAGAAATCATAGTCACTGCCACCTCAATGATGTTCGCCTGCCAACACTTGGCTCT CACTACTGCTACTTGCACCACCAACAACCAATTGCACCACCATCAGCAATCTAATCATGATCACAACAAGGTACCTCCCT CAAATTTTGGCAATTACAGAGATGTCCTTAGTAACATAGGAACAGATATTAGATCAGGCCAGAGTTTATTTTCCAATACT GAGTCAGAGGCACTGGATAGCTGGTTTGGTGAAAGCTACAACAACAATAATAACAATAGTAATGTTAATGATGATGATAA AAGTGTTGCAATTAGTGAAAGCAATAATTGTAAGGAAGCAATAATGTCTCCAGGGGATGGACATGAACCTGTTGATACTG ATGATAATGATATAATTGAATTGGATGTTGCTGATTTGTTGGCTAAGTACACGCATTATTGCCATGTTTGCGGGAAAGGG TTTAAGCGCGATGCAAATTTGAGGATGCACATGAGAGCTCATGGGGATGAGTACAAGACCAGTGCTGCATTGAGTAAACC AATTATCAAACACAAGGTGGGCAGTGAGAACTCTTTGATGAGTGTGAAGCCTAAAAAGTATTCATGTCCCCAATTAGGGT GCAGGTGGAACCAGAAGCATGCCAAGTTTCAAGCTTTGAAGTCCATGATTTGTGCTAAGAATCATTACAAGAGGAGCCAC TGCCCCAAAATGTATGTTTGCAAGAGGTGCAATCAGAAGCAGTTCTCTGTGCTTTCAGATTTGAGGACACATGAGAAGCA TTGTGGGGATCTCAAGTGGCAGTGTTCTTGTGGCACCACTTTTTCTAGGAAAGATAAGCTTATGGGCCATGTTGCTATGT TTGTGGGGCACCACCCAGCTGCTATGAATAGCTTTTCATGTTCAGGGAAAATAGAGAAGCAGGGATTGCAAATGCAGAAT GATGGTAGTTCAAGATGA
Protein sequence (LotjaGi3g1v0169500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISRPTSSFQSVHQGLQMFPPTQDLVSPSVEMISGSGSSPSTSSLLFNLSVLKEKLNQVQTLVGIILSPNQTLPESTSLA ISSMNTTIQEIIVTATSMMFACQHLALTTATCTTNNQLHHHQQSNHDHNKVPPSNFGNYRDVLSNIGTDIRSGQSLFSNT ESEALDSWFGESYNNNNNNSNVNDDDKSVAISESNNCKEAIMSPGDGHEPVDTDDNDIIELDVADLLAKYTHYCHVCGKG FKRDANLRMHMRAHGDEYKTSAALSKPIIKHKVGSENSLMSVKPKKYSCPQLGCRWNQKHAKFQALKSMICAKNHYKRSH CPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVAMFVGHHPAAMNSFSCSGKIEKQGLQMQN DGSSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 384 | 384 | 6.9E-151 | – | |
| PANTHER | 1 | 384 | 384 | 6.9E-151 | – | |
| Gene3D | 227 | 294 | 68 | 9.0E-6 | – | |
| SUPERFAMILY | 230 | 257 | 28 | 6.86E-6 | ||
| ProSiteProfiles | 232 | 259 | 28 | 12.508 | ||
| SMART | 232 | 254 | 23 | 0.0069 | ||
| ProSitePatterns | 234 | 254 | 21 | - | ||
| SMART | 287 | 320 | 34 | 110.0 | ||
| Gene3D | 295 | 383 | 89 | 5.0E-5 | – | |
| SMART | 325 | 347 | 23 | 23.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0169500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…