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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0170400 |
| Transcript ID | LotjaGi3g1v0170400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT1G24090.1 RNase H family protein; TrEMBL-Plants: tr|I3SSU1|I3SSU1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0170400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23360332..23364444) extracted from Lotus japonicus Gifu genome v1.2.
CTCAACTTTAATAAAAAATCTCATCCTCAAATCACTACCTTCTCTCCCTCTCCTTCTTCCTTTTCCCCCATTCTCATCCG CTTTCAAACCTCACATAGAGCTTCCAATTTTTTTCCTTTTCGACCTCACCCACTTACATCTCTGTGAGATTCATGCCAGA AACCGGCACCTAAGCCATTTTCACCGTCACGCCGAACCTCACGCTATTCTTACTGGTTTCTCTCTCAGATCGTTGTTGTT TGTTCGCGTATACATCAGAGCATGAAATTTCCTCTCTCAATCTCTCATTCACGTTCCTACCTTTCTCAATGTCTGAAGCT TCTCAGCCGTAGCACTCTTCGCCACTCCGATCATCGCAACCCGCAACCTCCCTCCGGCGACGAGACGACTCAGGTATCTT CATCTTGTGCTTAATTGATTTAGGGATTTAGATTTCTCAATTGATGTAGGGATTTAGATTTCTCATTCAATTTTTTGTTT AATTTCTTCCTTTTTATATCTTGACGGTGACGACTCAGGTATCTTCTTGATGGCGTTTGTTCCCTAATTTTCATCTTCAC AAGCACCCTGGCTGCCCTCATCGCCATCTCAGGTATTTCAGTTTTTTTGTTTTTCATATTTTCTTACGAGATTGATTAGT TGACTGATTAGTTGCCTCATTAGCTGCTTAAAAGTTTCAGCTTTTCAAACCTAATCATGTGAAATTATCCACCGTTAGTT TCTTAATCCTGTCAGGCTGCCACCATGGTCATGCGAAGGCTGAGCTTCTGAAAACCCTAATTTTGGAATGAAATTTGAAC AAAAAATGAAATAGGAAATAATTTATTTAAATATTAGAGATTTTTGAAAATGAGAAATTATTCTCCTTTAATTTCTCCCC CATAAAGCAAACTTTCTCCCCTTTATTCTTCACTTAGTAATTAGTGTTTTTGAATTCGAATTTGTGCTTGACCGTAAATT ATTCCCTGTATCAAGCCTTAGATTAGTGAATTTATTATTTAAAAACACCACCAATACAGTAACAACCTCATATCCATTAC CCTCAATTCAAATTTAAATTTTAAATAAGAAGGTAAGTGCTTCTCACTTTCCAGATTGTCATCGTCTCTCTCCAAGTTTC TAAGGAAAGCCTCTTCTCTCTTTTCTATCCGATTCATCTGCAGGTTAAGCATGCTCACAGTGAGTCATAAATTCAAAATT AATCATTCAAAATTAAAGTGAAGCTTTTGGCTTTATTTCAATTCAAATGATTTCTTTTGAATATTTTTTACAGGTGTTTT CTCTCAAACCACTATAAGATCAATTCACTTTAATAATTAAGATGCACATCTCTTGAAACTTACACGTTTTTTTATTTATT TGAACTGTACAACACATATCAATAATGTAGTGTTTGACTCCTTCCCTCTTTTTACTCCAGTTGTTCGACAAAAATATAAA CCAAGTGTAATGGTCGTATCTGATTCTTCTGCAGGTTAAGCATGCTCGCAGTAAGTCATAAATTCTAAATTAGAGTGAAG CTTCTGAATTTGTTTTACAAGAGCTTTCTTTCAAACCACTATAAGATCAATTCACTTTAACAATTAAGATGCACATCTCT TGAAACTTACATGTTTTTTATTTATTTGAACTGAATCAGTGTACAACACATATCAATAATGTACAGTGTTTGACCCCTTC CCTCCCTCCTCTGACTCTGGTTTTTACTCCATTTGTTCGACAAAAATATAAACCAAGGACAATGGTCGTATATGTTCACT TGATGCATGTCTATCCTGAAATGTTGGTTTTTTCTGTTACACATGTACAGGGTGTTCGGGCTGGCTCTTCAAGTTAGAAA GCTGAAAGAAATTATGAGCAGTGAAGCCAAGTAAGGAAAGAAGGATCTAAATTCTAAGGTAAACTTTTTTAACGTGACAG GAAAAACATTGGTAATGTTTGCATGTTGTTAACTCCATAGTTCATGGTAATGCTTTGTTAAGTGTTCTAATGGTGCTTAT TTGTTCATACTAAAATATTGTTCATACTTATATATTTAATTTTCAATGTATTTTTCATGCATGGAGCCAGTTACTTCTTA TTTCTTTTGTGGATTAGGGTTTTTGGGTGGCGCATGTGTGAGATTGATGCCACTTGGAGGAGGTATGTGTTTTGGACCTC ATATTAAGTTTTGATTTAATGTCATAATCGAGTATTTGTTCCTCTTTAAATACATCTTTTTTCACCATTAGTCTCAGGTT TGGAGATTTCTGACAGTTTGCGACTGTGCGTAGGTATGACACCTGAGAGGTCGTGGATAGTGATGGTTTTCTATGATACT TATTAAGGTTTGATATCTTCCTCTCAAGTATTTTTGTTTATCATCTCTTATTTAGATGCAACTTATACAATGGTTTAAGT TTTTCAAAGACACACAATTCATGCTTCCTTGATGAAGACTATCATGTATAAATTTGAATTGAGAAAATTTTGTTGTGTCC TTTTTCCACTGGTATGTCGTTGAGCTTTTTTCTATATTTTCTTATATATGTCTATGTATTATTTTTATCCATAATCCATT CATTTCAACAAAGTATTTTTTTCTCCTCTAGGTTGTCTTTTTTCTCCTCTAGGTTATCCATTCACTTATCATATGTGACT ATTGAAGAAGGCCAAGCTTCACATGGAGAAGCATTAACCAGGCAGCATGGCTACTGAAGAAAGAGGGCCTCTGGCGTATT GGAAGTGAGCAGTCTGTACACATTTGGGAGGACAACTGGCTGTTGGGACAAAATGGTTACAGAATATGGAGTCCAAGACC AGCAGATGGAGAAATCAAATTTGTGCAACAGTTGATTCAAGAGAACCCCAGAAGATGGAATGTTCAGTGTCTAAGAAGGT ACTTTCTCTCCAGCAAATTCCTCTTTTAGAGCTCTATCAGAGAGATAAGTTCATGTAGGGACCAGCAAAAAATGGAATTT ATAGAGTGAAATCGGGGTACTACCACACCAAAAAAAGGGAGACAAACCAGCATGGAAGTGTTTCAAACTTGACAAGCAGC TCAGAATTGTACAAACAAGTGTGGAATCTTAAAATCATGCCTAGACAAGCACAGTTTGTTTGGAGAGTTATGAAAAAAAC TCTTCCTGTTAAATCCAAACTCAGAAACAAAGGGGTTCCGTGCGACATGGTGTGCCCGAGGTGTAATGAAGAAGAAGAAG AAATTATAGATCATGCTCTCAGGGACTGCATTTGGGTTAGAAGACTGTGGTTCACTTCCCCCTTGGGAATCAGGTTTGAG CAGTTTGGAACAATCTCCTTCATTTATTGGCTCACATATATTTTGTTAAAAAAACCTCAAGAAATTAAAGAACTTATTTA TGTCATGACTCACCAAATCTGGTTTGCAAGGAATAAACTGTGCTTTGATGATAAAGAGATAGAATTGATTTGTGTGATTA GGAGAGCTGTATCTGGTTTTCAGGAATACCAACAAGGTCTGTGACGTCAAGATATCAATGGAGGTGATATACAATTTCCC CTAAGGAACCAAAATGATCCTACTGCTGTTCCCTTGCAACCAAAATGGAAACCACCACCAGTGGGAGTCTATAAGCTGAA TGTGGATGTGGCTGGTCCTGTTGACAACAAATGGGGTGCTGGTATAATTATTAGAGATGAACAGGGGAAGGTGTATGGCT GCTGCAACCAGATGTTTCTCATCAATACAGGATGCGGCAACTGCTAAGGCTTTGGGACTGCGATTTGCGGTGGAAACTGG TTTCAGAAATCTGGAAACTGAAATGGATTGCTTAGAGGTGGTGCATTCCTTTAACAACTCCAACAACAGAAGCTCTCATT CCTATCTTAGTGCTGTTTTGGATGATTGTAAACATTTAAAAACCTGTTTCCTCTTCTTTTGTTTAAATCATGTTAGTAGG AACCTTAACTCAGCTACTCATTTTCTAGCTAAATTCTCCTTATCTCATGTCAATCAAGAGTGGATAGAGGACACTCCCAG TTGTATTACTTCTATTGTGGCTATGGAAAGTTATCCTAGCACTGTTGAATGAAATCTTAAATTATCCTTCAAAAAAAATT CATATGTGACTATTTGAATCAAACATGTTCTTG
CDS sequence (LotjaGi3g1v0170400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAGGGGAAGGTGTATGGCTGCTGCAACCAGATGTTTCTCATCAATACAGGATGCGGCAACTGCTAAGGCTTTGGG ACTGCGATTTGCGGTGGAAACTGGTTTCAGAAATCTGGAAACTGAAATGGATTGCTTAGAGGTGGTGCATTCCTTTAACA ACTCCAACAACAGAAGCTCTCATTCCTATCTTAGTGCTGTTTTGGATGATTGTAAACATTTAAAAACCTGTTTCCTCTTC TTTTGTTTAAATCATGTTAGTAGGAACCTTAACTCAGCTACTCATTTTCTAGCTAAATTCTCCTTATCTCATGTCAATCA AGAGTGGATAGAGGACACTCCCAGTTGTATTACTTCTATTGTGGCTATGGAAAGTTATCCTAGCACTGTTGAATGA
Protein sequence (LotjaGi3g1v0170400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRGRCMAAATRCFSSIQDAATAKALGLRFAVETGFRNLETEMDCLEVVHSFNNSNNRSSHSYLSAVLDDCKHLKTCFLF FCLNHVSRNLNSATHFLAKFSLSHVNQEWIEDTPSCITSIVAMESYPSTVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 3 | 108 | 106 | 1.4E-17 | – | |
| PANTHER | 3 | 108 | 106 | 1.4E-17 | – | |
| Pfam | 4 | 100 | 97 | 1.6E-12 | ||
| Gene3D | 15 | 103 | 89 | 1.8E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi3g1v0170400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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