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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0171700 |
| Transcript ID | LotjaGi3g1v0171700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ARM repeat superfamily protein; TAIR: AT5G22820.2 ARM repeat superfamily protein; Swiss-Prot: sp|Q803M5|SAAL1_DANRE Protein saal1; TrEMBL-Plants: tr|I1MS78|I1MS78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0171700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23632803..23639698) extracted from Lotus japonicus Gifu genome v1.2.
AGCTGACAAAAAAAAACACGTGTCTTTTCTATGTCAAGCCCAAAAAAAAAAAGTTAAAAAAAATCTAAACTCAAGTACTC AACCCTTGACAAAAAAATAATCCCAAGTACACAACCTCTCCAACTCAGACTCAGTAACGGAGATTGATCAGGGGCTGTCT CACGCAGGTTAAGACTTCATTTTTTGCAAATTCTCGTGCTTTCCAAAATTGGAGGGAAAAACAAGCTAAGGTAAAGAAAC GCATGGCGGTTCCAGCAGATCCAGCAATCGAAGAAGAAGAAGAAGAAGAACACAGTGGTCCCACTCACCACCCTTCCGCT CCGTCACATGAGGTTATCATCGATTGTTCTTTGGTGATTGTTCATACTCTCAATTCTCAATTCCTATTTGGTGATTGTTT TTGAATTTTTCCTCATGCAGTTTTTCGATTTATCAACCACGGTTGATCCTAGTTATATAATCTCCTTGATAAGGAAGCTT CTACCTTCAGATTCTGCTTCTGAAGAAGGGGATGCACCACCGTCTGCATCTGCTGCTAATGGTGAACACATTGAATCATC CATGAAAAAATCTGAGAACATGGATGTTGATGTTTCCAGTGAGTTTTCGGACCGGCGAAGAGAATGTCAAGGTAGGGGTG ATGATGGATTTGGAGTTAGAAATTCCGGTGTCTCGGTTGGAGAGGATCCCTGGGAGGAATGTGGTTGCGTTTTGTGGGAT CTAGCTGCTAGTAGAACACATGCCGAACTCATGGTATGATAGGACACACTGTCTTTTGGTGGTTTAGTCAGTGTTTATTG GAGTTCCTTTTGTTAGCTCTCATGATGATCGGTCAATTTTTAGCGAAATTCAACATATTTTTGAAAAAAGTGATCAATTG ACTAGGCAAATCATTGACTTTTCAAAGAAATTGCGTGTTCAAAAGAGTGTGTTGCTAGCATTTTTCGTATTGTCAAATAT TAGTTTCTATTCAAAATGTGTTCTAGCCGTGTAGTGGTCTCTTCAAATAATGAGTTGATTCGATATACCTTGCTGTCACT ACCTGGTCATGCAAAACCATGTTTAAGTCTCAAACTTCACTCATATTGGCTTTTTAATAACATGATAGATGATCATTTGA ATGTTTTCTGACATAAGCTTTTTTATCATGCCACTTTCTCCATCAACCATCAAGCTCCTGGTAATTGGTATCAAAAACCA TCATTGTCACTTTCTCTCACCAGGATCTAAATACATTTAGCTTGTCAATGCTTTGAGCCATTCAATCTTTTGCTTGTTGT ATAAACTGTAATATAGTGGTTGTTGGGCATAATCCTGCAGGTGGAGAATCTCATACTCGAAGTTCTTTTGGCAAATCTCG GTGTGTGCAATTCGATGCGTGTTACTGTAAGTCAATATCAAAATATGCATCATGATTCAGACTGCACTCTTTTAATAGTT TGTTAATGTAAAATTATCAGGTAGGTAACTGAGAACTCTAATGTCACTATTTTTGCATGTTTTTTTGGATTAATTACATG GTGTAGGAAATTAGCATAGGAATTATTGGGAACCTTGCCTGTCACGAAGTTCCAATGAAGCATATAGTCTCGACAAAAGG ACTAATTGACACAATTGTGGATAAATTGTTTCTGGATGATCCTCAGGGCCTGTGTGAAACATGCCGGTATGATGCATTTT TTACACATGTATTTCTTGTCAACTTTGGAATTTTTATACCTGATGTTAGGGATCAAATTTACTTGATTGGTTACTGACTT ACTGTTTCTTGTTAGTCCTGATTTTTCATCTCTGCATCTTCAATTGTTCCTTGTTTATTTCCAATTTACTTGACTGCTCC ACGCAGATCTAATTATTCCTTGTCTATTCCCAATTGGAACATTTTCATTTTTTTCCAGGAACTTACATGATATGAGGTTA CTGAGTTATAGTCTCTTTTGCTTTTACTGAATTTGTTCATCTTTCTTCTTTTGTATTCTTACAGAATTAACAGTAACAGT AATTACATGTACTGAGGTGCAGAATCCCATTCTTTTGTCTGCCAGTGCTTATTATGTGTAATAGTTTTGAAAGCAGAGCT ATCTCATTTTGCATTGTTCTATAGCTACTTATCATGGGAATGGGCTCTTTGGGATTTTGGGAGGATGTTGGGTCTGTCCT AGGGATTTGCATCAGTTTCTCTTAGTTGATTTCAGAGGTTTTACCTTAAATATAGAAGCTAAGGTTTTGCGGCAATTTTC TGTCTGTGATTCTTTGCTGTTTATGGCTGGAGAGGAATGCTAGAATTTTACAGAACACTTGTTTACTTCATTTGGAATTA GGTAAACCTTCTAGGGTTCTACTCAGTTCTTATGGTGTTTTTAGATCTGTTTCTTTCTCAGACACGCAGAAAGATTGGCA TGCGTTACTGCATGATTCAATTCCTAGGTGCTAGTTTTGCTTTGTTTTCTTCAAAGGATGTTTTATCATCTTTCTTTGTA CTATTATCTCCTTCCTTAATAAATTTCTTTCTGTAAAAGAAGAAGAATATGCACACAGATATGCCTACTCAACTAGATAG GAAAGTGGAGTGATGTTTTATTTATTTATCTCAAGAATTTTATGAATGTTAGTTGTCCTTCACTGTAAATTAGGTATCAT ACTACTTTTTGGCACCATCATATTTATTTTGCAAACATCTCTTATAGTTAGCTTTGGGAACAGATTGTTGACTGTCGGTC TTCAAAGTGGTGAATCCATTACATGGGCTGAGGCGTTGCAGTCTGAACATATACTATGTCAAATATTATGGATTGCAGAA AATACTTTGAACCTTCAGCTGTTAGAAAAGGTAACGAGTAATTCATGATAGTTCAACTTTTTTATTTTTATGGAGGTTAC AAGTCACTAAACTTTGTCAAAAGCATTTTGTAAATATTTTCACAAAAAATATAATTTCAGAGAACAAAATGAGTAATTTG ACATTTTTTCTGAGTCAGAATGCACGTTCCATCCATTCAATAGATAAGAGTATTCTACTTTTTAACAGAGTGTTGGGCTT ATATTAGCTATATTGGAAGGTCAGGCGAAAGTTGTGGATGCTCTTCTTCCACCTTTGATGAAGCTTGGTTTGGCAAGTAT ATTGATCAATCTCTTGACTTTTGAGATAAGCAAATTAACTAGTGAAAGAATCCCTGAAAGGTGCCTTGATCCACAACCCT ACATTGTGCAATGATTTATCTTCTGAAATAATTCTGACAATTTCAGTGACACATGCTTCGAAAATGGACTGGCTTGCAAT TTTTCCCCTCTTACATTTCATTTTCTAGATATCTATCCATCCAGCTATCTGGGGGAACTGATATGACAGCCTAATATCTT AACGTTTCAGGTACTCAGTTCTTGATTTAATTCTTCGTGCAATTGAGGCCATTTCTATTATAGACGACCATTCTCAGGAA ATTTGTTCAAGTGAAGAGCTTTTTCGACTAATATGTGATCTGGTTAAGTTCCCAGATAAAGTTGAGGTACAGTGTTGCTG TAGGTAAAACTTTCAATATTGATGCATTTTGCTAAAGGTCAACTGTTGAAATCAATAATTTGGTTTTAGATGAGCTGTAA ATTTATGAATTTTAATATTCATATTTGAATTTTGTTTTGTCCATTCTGGGGTGTAAAATATTGTCAACGGGATGTCTTAG TTTGGAAAATTATGTCCTCAAGCTCATAAATATTGTAACGAATTCTCCAAAATAATTAATGTCTTTTTATTTTTTTCTTA ATATTTGAATTTTAAGAAGAATCACAAGCTTTTATATCTTTAAGGTAAGGAGCTTTTTCTCTGTCAATGAACAATATGGT ATTTTTGTTTTCCTTTTCTTGGTTCCCCTGAGTACCATCAATTGAGGTATTGAACTGTGTACTTCTGATATTTTCTCATG GATATTTTCCACATTTTCCGGAAGCCATGATAAGTGTTTTGACTGTGGGTTTTGCTCAAATAGACGAAGATGAGGGTTTT CAATACTAGGCTCCTCTCCCCCAAAAAAGATTGCAAGTATCTTTCATGAAACGCTGAACATTGATGATAAATTCACAATT TATTAATATATAAGGGTGGCTGAGAATCGAAGTTACTGTTACACTTATCTGAACTAAAAAGGCATCGTCCTTCTTATGGA GGATTTTTTAGAAAAAACTAAATCTAAATTCAGTTGAGCAGTGAACTAATGCGCCGACTTAATCGTGCTGTTCAAACCTT TGTCAATTATGAATTTTGAGACCTGTTGTGGGAATCAAATATCTGCCGAAAGAATAAACACCTGATTTTCTAAATTGATG TAGAAAATTATATGAAATAATTATTATGATTAAAATTATGAATCATGTCATCTGGTAACCTGATGCTCATGCTCTTGTGC CTCTTTGTATTTTATTATGTGCTTCTCTCTTGCTATATTATTATGTGCTTCTCATAGATTGACAAGAAATGAAAATGATT TAGCCAACTGAAAAAGCATGGTGAATTGGTGATTTCTCCTGCAGGTTGGGAATTGCTGTGTTACAGCTGGAGTTCTTCTT GCAAATATTTTGTCTGATGTTGCTGATCATGCTTCTGAGGTCTCACAGGGTAAAACAGTTTTCTTTCACTCTCATCCACA AACTTAAATTATTTCCTTCTTTCTGTATCTCTGGGTTAGTTAATAACATAATATAATGGTAAATGGCATTGTGCCTTCCA GATTCGTGCCTTTTAGCTGGTCTGCTTGACATATTCCCTTTTGCTTCGGATGATTTGGAAGCTACAAATGCAATCTGGAA TGCAATTGCTAGAATATTGGTTAGAATTCGAGAAACTGAAATGAGCCCTCCAAGTGTATGTAACTATGTTTCAGTTCTTG TCGGAAGAATTGATCTGATTGAAGATGAGCTTCTCAACCAACAGGAAAGCTTGTCTTCTCCTGGTTCAACAGCAGATGCT ATAAATACATCTGTATCCTTCTCTTGTAGTTAGCTGAATTTGTTGTTTCTGATTCTGATCCCTACTTTGCATGGACAGGA ATTCAAATGCATGAGTCACAATTCTTGGCATGATGTTTCGATGTCTTAAAAATAAACTGTTGGATTTAATCATTCCTTTT GTTTGCATGCTGTCAAGATTATATGATTAAGAATCCATTTTGATTCATCTTGCAGTAATTAGCTCAGGCTAGAGAAAAAG TGATAATTTATAGTAACTAACAAATTCATCATAAAAAAGTTAAAACATTTTTTTTGTTGAAATAAAAAAGAATTTCATTT TGATAGATTGTCACATGCAATAATATATCATTACATAATTTAATGAGTTTCACGTCTCCTGTCGTTGCTAGGAAATCATT TACACAAGCAACTAGTTTATATTATTTTTTTGTTTTACAGTCTTAACATACAGTGATACAGGGCATTTTTTTTGGTATTT ATTAATGATACTGTATGTTACAGAGGAATTTTTACATGATCAGGTACATACAGCGGAAATTAAATATTAACTAAAGGGGA AATTGCACTCACCTCCCTTGAGGTATCTTATCTCAGGGGAGGTCAGTGCAATTATAATAAACCTGAAGGGAGGTCAGTGC AATGTTACCAATGAAATAAGGGTAGTTAGCGTCTTGTTAAATAATAGAGGGGAGGTCAGTGCAATAGTGCAAAACTTCAG GAGAGGTTAATGTAATTTCCCCTTAACTAAATGTTAATTTGTATGTTATGTCGTAGAGTCCATTGGTGACATTTATTATT TTCCTTTATATATTGTCAATGTGGTTCACTAAAGAGAAATTCTTAAGCAGGGAAACAAATGCATTAATGATCTTTGTTTA GATTACTGTCCTTTAAAATAAGCATCATACCTTTAAACCTCTATCTTGCTACTAGCCATCCAACGAGCCTAACTATAACA AGCGAGCCATACCTACTGACAGTTAGGATGACATGCTTAATTATGTGGATGCATGATTTTCCATTTATTTGTTTCCCTTT ACCTTTGAACAATAGCTCAGGAGGATAATCAGCATTCTGAACCAGTGGACTGCTGCAAAGGAGAATACTGAGAGTAATGG GAATGCTGAAGTTCTTGTCAGTGAGGCAGATATAAACAAATTGTTGAATTGCTGTCGTAAATTCTTGATGTAGAATTACT TTTATCTTGTAAATTACAATTGTCCAGACAATCTTTGAAGGTTCTGTACCTGCAGGTGCCGTTGTATTTGCTTGTTCTGG ACCTGTTACATTTAGCTATACGTACATCAATTTTGACATTGTCCTAACTTACCTTCTTTCAGAAGCTGTTGCTGGTGGGA GAATTTTCACCTACCTTTTGGAATTGTTTGCTGATTGCTGGGCTTTATGCAACCTCTATGCTGAGAGGTAATAGTAATCT CTCTGGTTTTGTTCTTCATGAGTGGTGATGTTATCCCCTTGCTTTGACACCTGGTTTAAATCCATCCTGAAGCTTCCAGC ACCTTTGTACCTTTGTTGATGTTGATTAGAGTTGAGAAATCCGACTATTGATAAATTCTGAAGCTAGTTGTCTGAATGGT CATCTTTTGTTTGGTTTAGAGAGTAGGACAGGAAGTGTTTGAAAAAGTGTAGACTTCTAGTGAAAGATATATTCTATATA TCCATGTTTGAGCTTGTATTAACATATGTTTATATGTTTAACACTTAACTAGTTATATTGTCAAAATGATTTTTCTTTTT GTAGAATGATGGTAATGGAGTTTCATTGTATAATTTTATGTAAACTATTTAAATTCTTCACAAGTCTAATGCGAGTTGCT TTAAGAATTAAAATGTTGATGGTGAACTTTCCAACAATAATTATAATTATAATTTACATTTATGCTTCGAAGTGAACCTC TCATTCATATTTTAAA
CDS sequence (LotjaGi3g1v0171700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTCCAGCAGATCCAGCAATCGAAGAAGAAGAAGAAGAAGAACACAGTGGTCCCACTCACCACCCTTCCGCTCC GTCACATGAGTTTTTCGATTTATCAACCACGGTTGATCCTAGTTATATAATCTCCTTGATAAGGAAGCTTCTACCTTCAG ATTCTGCTTCTGAAGAAGGGGATGCACCACCGTCTGCATCTGCTGCTAATGGTGAACACATTGAATCATCCATGAAAAAA TCTGAGAACATGGATGTTGATGTTTCCAGTGAGTTTTCGGACCGGCGAAGAGAATGTCAAGGTAGGGGTGATGATGGATT TGGAGTTAGAAATTCCGGTGTCTCGGTTGGAGAGGATCCCTGGGAGGAATGTGGTTGCGTTTTGTGGGATCTAGCTGCTA GTAGAACACATGCCGAACTCATGGTGGAGAATCTCATACTCGAAGTTCTTTTGGCAAATCTCGGTGTGTGCAATTCGATG CGTGTTACTGAAATTAGCATAGGAATTATTGGGAACCTTGCCTGTCACGAAGTTCCAATGAAGCATATAGTCTCGACAAA AGGACTAATTGACACAATTGTGGATAAATTGTTTCTGGATGATCCTCAGGGCCTGTGTGAAACATGCCGATTGTTGACTG TCGGTCTTCAAAGTGGTGAATCCATTACATGGGCTGAGGCGTTGCAGTCTGAACATATACTATGTCAAATATTATGGATT GCAGAAAATACTTTGAACCTTCAGCTGTTAGAAAAGAGTGTTGGGCTTATATTAGCTATATTGGAAGGTCAGGCGAAAGT TGTGGATGCTCTTCTTCCACCTTTGATGAAGCTTGGTTTGGCAAGTATATTGATCAATCTCTTGACTTTTGAGATAAGCA AATTAACTAGTGAAAGAATCCCTGAAAGGTACTCAGTTCTTGATTTAATTCTTCGTGCAATTGAGGCCATTTCTATTATA GACGACCATTCTCAGGAAATTTGTTCAAGTGAAGAGCTTTTTCGACTAATATGTGATCTGGTTAAGTTCCCAGATAAAGT TGAGGTTGGGAATTGCTGTGTTACAGCTGGAGTTCTTCTTGCAAATATTTTGTCTGATGTTGCTGATCATGCTTCTGAGG TCTCACAGGATTCGTGCCTTTTAGCTGGTCTGCTTGACATATTCCCTTTTGCTTCGGATGATTTGGAAGCTACAAATGCA ATCTGGAATGCAATTGCTAGAATATTGGTTAGAATTCGAGAAACTGAAATGAGCCCTCCAAGTGTATGTAACTATGTTTC AGTTCTTGTCGGAAGAATTGATCTGATTGAAGATGAGCTTCTCAACCAACAGGAAAGCTTGTCTTCTCCTGGTTCAACAG CAGATGCTATAAATACATCTCTCAGGAGGATAATCAGCATTCTGAACCAGTGGACTGCTGCAAAGGAGAATACTGAGAGT AATGGGAATGCTGAAGTTCTTGTCAGTGAGGCAGATATAAACAAATTGTTGAATTGCTGTCGTAAATTCTTGATGTAG
Protein sequence (LotjaGi3g1v0171700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVPADPAIEEEEEEEHSGPTHHPSAPSHEFFDLSTTVDPSYIISLIRKLLPSDSASEEGDAPPSASAANGEHIESSMKK SENMDVDVSSEFSDRRRECQGRGDDGFGVRNSGVSVGEDPWEECGCVLWDLAASRTHAELMVENLILEVLLANLGVCNSM RVTEISIGIIGNLACHEVPMKHIVSTKGLIDTIVDKLFLDDPQGLCETCRLLTVGLQSGESITWAEALQSEHILCQILWI AENTLNLQLLEKSVGLILAILEGQAKVVDALLPPLMKLGLASILINLLTFEISKLTSERIPERYSVLDLILRAIEAISII DDHSQEICSSEELFRLICDLVKFPDKVEVGNCCVTAGVLLANILSDVADHASEVSQDSCLLAGLLDIFPFASDDLEATNA IWNAIARILVRIRETEMSPPSVCNYVSVLVGRIDLIEDELLNQQESLSSPGSTADAINTSLRRIISILNQWTAAKENTES NGNAEVLVSEADINKLLNCCRKFLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 10 | 503 | 494 | 2.9E-184 | – | |
| PANTHER | 10 | 503 | 494 | 2.9E-184 | – | |
| MobiDBLite | 54 | 111 | 58 | - | – | |
| MobiDBLite | 75 | 104 | 30 | - | – | |
| Gene3D | 119 | 486 | 368 | 5.5E-7 | ||
| SUPERFAMILY | 122 | 409 | 288 | 1.53E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0171700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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