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LotjaGi3g1v0171900.1

Overview

Field Value
Gene ID LotjaGi3g1v0171900
Transcript ID LotjaGi3g1v0171900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Bifunctional polymyxin resistance protein ArnA; TAIR: AT1G08200.1 UDP-D-apiose/UDP-D-xylose synthase 2; Swiss-Prot: sp|Q9SGE0|AXS2_ARATH UDP-D-apiose/UDP-D-xylose synthase 2; TrEMBL-Plants: tr|I1LTQ1|I1LTQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0171900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:23669707..23673323) extracted from Lotus japonicus Gifu genome v1.2.

GACAAACAATAGCCTTATAATACACAGCTCATGAATCATGGATCACTACTATAATAAACAAGAATCACATGAAACAAACC AAAATCTTTCCATAACAGCACACACTTATTTTCTTCCTAACATATCACACCATTGGCAAAGATGTGACTAATCATTTAAA ACTCTGAGATTACATTATTTATGTGAATAAAAATTCTCCCAACAAATATTTATCTATACACATCGTTCATAAATCAAATT CTAAACTAGATGCTTATAAAGTTCGACTATCTATACGATGCTCTAATCATAAATTAAATTAAATACCTTGCGTGCAAAAA TCAAATATCGATAATAGCAGTGAGTGAGTGACAGTAGAAAGAAACCAAAGAATCACAGGTGGGAGAGCAAGCACCACTTC TTTATATTCACACCACAATCTCCTTCATTTTCCCACCACCATCTTCTTCTTCTTCTTCTTCTCTGCATTGTTGTTCTTGC CATGGCTGCGCGTGTGGATCTCGATGGCAACCCCATCAAGCCATTGACCATTTGCATGATCGGCGCCGGAGGCTTCATCG GATCCCACCTCTGCGAGAAGCTCATGTCGGAGACGCCGCACAAGGTGCTCGCTCTCGATGTCTACAGTGACAAGATCAAG CACCTCTTGGAGCCTGACACGCTCCCTTGGGCTGGTCGCATCCACTTCCATCGCCTCAACATCAAGCACGATTCTAGGCT TGAAGGTCTCATCAAGATGTCAGATCTGGTTCGTTTTCCTTCCTACCCATCTCGATTTTTCATCACCATTTCTCATTCTG TCATCTGGGTCTCCCTCAAAATTCTCTCTTTCTCGCTGATTTTCTCTCTATCAATTCTGGGTTTCCCTCAAAATTGTGTG TTTTTTTCTTGCAGACTATTAATCTCGCTGCAATATGCACTCCTGCTGATTACAACACTCGTCCTTTGGACACCATTTAC AGCAATTTCATTGATGCTCTTCCTGTGGTACGTGTTCTTATCTTACCTTCTCTCAATTTTGGAGTCAAAGGTTCACTTAT TGTGGTTGTTGCTATGTTGTGGTGTGGAAGAATTTGATTGATGTAGAGGATTTTTGGTTTCAGGCGAAGTACTGTTCGGA AAACAACAAGCGTCTCATTCATTTTTCTACTTGTGAAGTGTATGGGAAAACAATTGGAAGCTTTCTTCCTAAGGATAGCC CACTTCGTCAGGTGAGCTTTCATTTTCCCTGTTGCATGTTACTTCAGATCCGTGGTTAAACAATGATCCGTTACTTTTGG AATGTGTCGGTGGTTAGTGGTTACCCCATTTCACCCCAACCATATGAGATCACCTGGTTTCATGATGGTAAATGCATGCA TGTGTGCCTTATAAACATAGAACTTGATTGATATTAGCATTTGGTATGTGTATTATAGGACAATCAACAATGTGAAATGT CATCACATATTGAGAGATTTACATATATGGTTCTTCTTAGTTTCTTTAGGAATTGTTTCTTAATTTCCTTTGAAGTATTT ACTATTAGAGACTGTGGATCTTTTTGAACAACAGGTCCTCTTTGTCTTTCTGCCTTTTTCCCCCCTTTTGCTGCTGCCAT TGCTTTTATGTTAGGCTTTAGGAGTTAACTGCTTCTTTTTGGTAGTGAAGTTCTTTGGTTTCTTCGTTTTGGTAATGAGC TAAATTATTTTATTTCCAATGCTGTGTTAGGATCCTGCATATTATGTTCTTAAAGAAGATGAGTCCCCTTGCATTTTTGG TTCAATTGAAAAGCAGAGATGGTCCTATGCTTGTGCAAAGCAGTTGATTGAGAGGCTGATTTACGGTTAGCTAATTTTAT TTCATTTGATTTTTTGGTGGATTTATCTGTTTCCGAGCCCTGACTTATCTCTTTTACATTCCATCATTGACAGCTGAGGG TGCTGAAAATGGCATGGAGTTCACAATTGTGAGACCTTTTAATTGGATCGGACCAAGAATGGATTTCATTCCTGGCATTG ATGGTCCAAGTGAGGGTGTTCCCAGGGTTCTTGCATGCTTTAGCAATGTCAGTCTACTTTTCTATTAAGCTTGTGTACAT TTCAGTCAAATTCTTTGAATACCAGCTCTAAGATTTGGCTCTTTTCCTTTCCTGCAGAACCTCCTCCGCCGAGAGCCCCT CAAGCTTGTGGATGGTGGCGAATCCCAGAGGACTTTCATTTATATTAAGGACGCTATTGAAGCTGTCTTATTGATGATTG TAGGTTCTCATATCCAATGCTTTACAATACTTTTTTCAATTTCAAATTATGTGGTTGCGGAAGTTAATCTTTGAAGTATT GTTCTTATTTGTTGATCCACTAAACATGCTATGGCCTTTTAACAGGAAAATCCTGCCAGGGCAAATGGGCACATTTTTAA TGTGGGTAACCCACACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTAAGGTTAGATAATTAAGTATTTTTT TATTGTTTCACCCTTTCATTTAGAACCTCAGCATGTTATTTAGTGGCATTTCATATATTAATTTCCTTTAAATTCTCGCA GGTTTATTCAAAGGTAAGTGAAGAAGCTCCTTTGGAAAATCCTGCAATAGATGTGAGCTCCAAAGAATTTTATGGTGAGG GGTATGACGATAGTGACAAGAGAATTCCTGACATGACCATAATTAACAAGCAACTTGGTAGGTTCCCTCGTTAACTATAC CATACTTATAGCATGTTTGGATCAACTTCTATGTTCTCATGATCAATTTTGAAACCCTGTAACTAGTCACATAAGCTTTT CACCAGAGTTGGTTTTAACTTTAGGAGTCAATTGCGGAAGAATTTCCAAACATGCACTTAGACCATAAGATTGTTAACAT TCTAACATTCTTTACCTGTTTATCTTGTTGTCTCTTTTTCAGGCTGGAATCCTAAGACCTCACTTTGGGACCTTCTTGAA TCTACTCTAACTTATCAGCATAGGACTTATGCTGAAGCCATTAAGAAGGCAATAGCAAAACCAGTTGCAAGCTAAGCTTA CATGGTGATGTTAATGGAGTGTTTGGCCCATGGGGGCACTGAAATATAGTTTACTTGTTGATTTTACATAAATGGTAATT GTCCCAGTTGGTTTTGGCAGCCAATAGCCCACGCCCACGTCTCTTTTTTATTACATGTTTATGGAGAAATAGTAATTTAT CAAGGGCAATCTTGTGCTTTTGCTATGTAATTTTCATGCAAAGCTTCTTGCTATACATGTTTAGAGACCCTTGTAATGTT TAGAGACCCTTCTACAAGGAAAGATATTTTTTTGTATGGTAGGGATGTGTCGGTCATTCCTTCAGTTGTAACATTTGCCA TATGTTTCCTACATAATTTGTCATTGATTTATTTTATGGATTATTTTTTGTATCAAAATGTTTTCCTCTAGTAATTTGTA CAAGTTCCACCAACCTTCATTCTCAACAAAATAATTAAAAATAAAACAGTGTTGATCTATCCTAGTTAAAAATCACTGGC CTAGACTTCAGTCAGATAATTTTGTACTTGAGGACTTGGAGTGCATTTATATGAAAGTAAAAATCAATAGAATCTGTCCG TAGAAACTAAACATGAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0171900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCGCGTGTGGATCTCGATGGCAACCCCATCAAGCCATTGACCATTTGCATGATCGGCGCCGGAGGCTTCATCGG ATCCCACCTCTGCGAGAAGCTCATGTCGGAGACGCCGCACAAGGTGCTCGCTCTCGATGTCTACAGTGACAAGATCAAGC ACCTCTTGGAGCCTGACACGCTCCCTTGGGCTGGTCGCATCCACTTCCATCGCCTCAACATCAAGCACGATTCTAGGCTT GAAGGTCTCATCAAGATGTCAGATCTGACTATTAATCTCGCTGCAATATGCACTCCTGCTGATTACAACACTCGTCCTTT GGACACCATTTACAGCAATTTCATTGATGCTCTTCCTGTGGCGAAGTACTGTTCGGAAAACAACAAGCGTCTCATTCATT TTTCTACTTGTGAAGTGTATGGGAAAACAATTGGAAGCTTTCTTCCTAAGGATAGCCCACTTCGTCAGGATCCTGCATAT TATGTTCTTAAAGAAGATGAGTCCCCTTGCATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCTTGTGCAAAGCA GTTGATTGAGAGGCTGATTTACGCTGAGGGTGCTGAAAATGGCATGGAGTTCACAATTGTGAGACCTTTTAATTGGATCG GACCAAGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCCAGGGTTCTTGCATGCTTTAGCAATAAC CTCCTCCGCCGAGAGCCCCTCAAGCTTGTGGATGGTGGCGAATCCCAGAGGACTTTCATTTATATTAAGGACGCTATTGA AGCTGTCTTATTGATGATTGAAAATCCTGCCAGGGCAAATGGGCACATTTTTAATGTGGGTAACCCACACAATGAGGTTA CAGTTAGGCAGCTTGCTGAAATGATGACTAAGGTTTATTCAAAGGTAAGTGAAGAAGCTCCTTTGGAAAATCCTGCAATA GATGTGAGCTCCAAAGAATTTTATGGTGAGGGGTATGACGATAGTGACAAGAGAATTCCTGACATGACCATAATTAACAA GCAACTTGGCTGGAATCCTAAGACCTCACTTTGGGACCTTCTTGAATCTACTCTAACTTATCAGCATAGGACTTATGCTG AAGCCATTAAGAAGGCAATAGCAAAACCAGTTGCAAGCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0171900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAARVDLDGNPIKPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDTLPWAGRIHFHRLNIKHDSRL EGLIKMSDLTINLAAICTPADYNTRPLDTIYSNFIDALPVAKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAY YVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNN LLRREPLKLVDGGESQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTKVYSKVSEEAPLENPAI DVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKAIAKPVAS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43245
7 382 376 4.2E-241 –
PANTHER
PTHR43245:SF28
7 382 376 4.2E-241 –
Gene3D
G3DSA:3.40.50.720
15 378 364 2.4E-102 –
CDD
cd05257
16 371 356 1.28299E-125 –
SUPERFAMILY
SSF51735
16 369 354 1.14E-61
IPR036291
Pfam
PF01370
17 287 271 3.9E-61
IPR001509

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0050662
Molecular function Coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0171900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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