Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0171900 |
| Transcript ID | LotjaGi3g1v0171900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UDP-D-apiose/UDP-D-xylose synthase; TAIR: AT1G08200.1 UDP-D-apiose/UDP-D-xylose synthase 2; Swiss-Prot: sp|Q9SGE0|AXS2_ARATH UDP-D-apiose/UDP-D-xylose synthase 2; TrEMBL-Plants: tr|I1LTQ1|I1LTQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0171900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23670175..23672741) extracted from Lotus japonicus Gifu genome v1.2.
TGTTGTTCTTGCCATGGCTGCGCGTGTGGATCTCGATGGCAACCCCATCAAGCCATTGACCATTTGCATGATCGGCGCCG GAGGCTTCATCGGATCCCACCTCTGCGAGAAGCTCATGTCGGAGACGCCGCACAAGGTGCTCGCTCTCGATGTCTACAGT GACAAGATCAAGCACCTCTTGGAGCCTGACACGCTCCCTTGGGCTGGTCGCATCCACTTCCATCGCCTCAACATCAAGCA CGATTCTAGGCTTGAAGGTCTCATCAAGATGTCAGATCTGGTTCGTTTTCCTTCCTACCCATCTCGATTTTTCATCACCA TTTCTCATTCTGTCATCTGGGTCTCCCTCAAAATTCTCTCTTTCTCGCTGATTTTCTCTCTATCAATTCTGGGTTTCCCT CAAAATTGTGTGTTTTTTTCTTGCAGACTATTAATCTCGCTGCAATATGCACTCCTGCTGATTACAACACTCGTCCTTTG GACACCATTTACAGCAATTTCATTGATGCTCTTCCTGTGGTACGTGTTCTTATCTTACCTTCTCTCAATTTTGGAGTCAA AGGTTCACTTATTGTGGTTGTTGCTATGTTGTGGTGTGGAAGAATTTGATTGATGTAGAGGATTTTTGGTTTCAGGCGAA GTACTGTTCGGAAAACAACAAGCGTCTCATTCATTTTTCTACTTGTGAAGTGTATGGGAAAACAATTGGAAGCTTTCTTC CTAAGGATAGCCCACTTCGTCAGGTGAGCTTTCATTTTCCCTGTTGCATGTTACTTCAGATCCGTGGTTAAACAATGATC CGTTACTTTTGGAATGTGTCGGTGGTTAGTGGTTACCCCATTTCACCCCAACCATATGAGATCACCTGGTTTCATGATGG TAAATGCATGCATGTGTGCCTTATAAACATAGAACTTGATTGATATTAGCATTTGGTATGTGTATTATAGGACAATCAAC AATGTGAAATGTCATCACATATTGAGAGATTTACATATATGGTTCTTCTTAGTTTCTTTAGGAATTGTTTCTTAATTTCC TTTGAAGTATTTACTATTAGAGACTGTGGATCTTTTTGAACAACAGGTCCTCTTTGTCTTTCTGCCTTTTTCCCCCCTTT TGCTGCTGCCATTGCTTTTATGTTAGGCTTTAGGAGTTAACTGCTTCTTTTTGGTAGTGAAGTTCTTTGGTTTCTTCGTT TTGGTAATGAGCTAAATTATTTTATTTCCAATGCTGTGTTAGGATCCTGCATATTATGTTCTTAAAGAAGATGAGTCCCC TTGCATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCTTGTGCAAAGCAGTTGATTGAGAGGCTGATTTACGGTT AGCTAATTTTATTTCATTTGATTTTTTGGTGGATTTATCTGTTTCCGAGCCCTGACTTATCTCTTTTACATTCCATCATT GACAGCTGAGGGTGCTGAAAATGGCATGGAGTTCACAATTGTGAGACCTTTTAATTGGATCGGACCAAGAATGGATTTCA TTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCCAGGGTTCTTGCATGCTTTAGCAATGTCAGTCTACTTTTCTATTAA GCTTGTGTACATTTCAGTCAAATTCTTTGAATACCAGCTCTAAGATTTGGCTCTTTTCCTTTCCTGCAGAACCTCCTCCG CCGAGAGCCCCTCAAGCTTGTGGATGGTGGCGAATCCCAGAGGACTTTCATTTATATTAAGGACGCTATTGAAGCTGTCT TATTGATGATTGTAGGTTCTCATATCCAATGCTTTACAATACTTTTTTCAATTTCAAATTATGTGGTTGCGGAAGTTAAT CTTTGAAGTATTGTTCTTATTTGTTGATCCACTAAACATGCTATGGCCTTTTAACAGGAAAATCCTGCCAGGGCAAATGG GCACATTTTTAATGTGGGTAACCCACACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTAAGGTTAGATAAT TAAGTATTTTTTTATTGTTTCACCCTTTCATTTAGAACCTCAGCATGTTATTTAGTGGCATTTCATATATTAATTTCCTT TAAATTCTCGCAGGTTTATTCAAAGGTAAGTGAAGAAGCTCCTTTGGAAAATCCTGCAATAGATGTGAGCTCCAAAGAAT TTTATGGTGAGGGGTATGACGATAGTGACAAGAGAATTCCTGACATGACCATAATTAACAAGCAACTTGGTAGGTTCCCT CGTTAACTATACCATACTTATAGCATGTTTGGATCAACTTCTATGTTCTCATGATCAATTTTGAAACCCTGTAACTAGTC ACATAAGCTTTTCACCAGAGTTGGTTTTAACTTTAGGAGTCAATTGCGGAAGAATTTCCAAACATGCACTTAGACCATAA GATTGTTAACATTCTAACATTCTTTACCTGTTTATCTTGTTGTCTCTTTTTCAGGCTGGAATCCTAAGACCTCACTTTGG GACCTTCTTGAATCTACTCTAACTTATCAGCATAGGACTTATGCTGAAGCCATTAAGAAGGCAATAGCAAAACCAGTTGC AAGCTAA
CDS sequence (LotjaGi3g1v0171900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCGCGTGTGGATCTCGATGGCAACCCCATCAAGCCATTGACCATTTGCATGATCGGCGCCGGAGGCTTCATCGG ATCCCACCTCTGCGAGAAGCTCATGTCGGAGACGCCGCACAAGGTGCTCGCTCTCGATGTCTACAGTGACAAGATCAAGC ACCTCTTGGAGCCTGACACGCTCCCTTGGGCTGGTCGCATCCACTTCCATCGCCTCAACATCAAGCACGATTCTAGGCTT GAAGGTCTCATCAAGATGTCAGATCTGACTATTAATCTCGCTGCAATATGCACTCCTGCTGATTACAACACTCGTCCTTT GGACACCATTTACAGCAATTTCATTGATGCTCTTCCTGTGGTGTATGGGAAAACAATTGGAAGCTTTCTTCCTAAGGATA GCCCACTTCGTCAGGATCCTGCATATTATGTTCTTAAAGAAGATGAGTCCCCTTGCATTTTTGGTTCAATTGAAAAGCAG AGATGGTCCTATGCTTGTGCAAAGCAGTTGATTGAGAGGCTGATTTACGCTGAGGGTGCTGAAAATGGCATGGAGTTCAC AATTGTGAGACCTTTTAATTGGATCGGACCAAGAATGGATTTCATTCCTGGCATTGATGGTCCAAGTGAGGGTGTTCCCA GGGTTCTTGCATGCTTTAGCAATAACCTCCTCCGCCGAGAGCCCCTCAAGCTTGTGGATGGTGGCGAATCCCAGAGGACT TTCATTTATATTAAGGACGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCTGCCAGGGCAAATGGGCACATTTTTAA TGTGGGTAACCCACACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTAAGGTTTATTCAAAGGTAAGTGAAG AAGCTCCTTTGGAAAATCCTGCAATAGATGTGAGCTCCAAAGAATTTTATGGTGAGGGGTATGACGATAGTGACAAGAGA ATTCCTGACATGACCATAATTAACAAGCAACTTGGCTGGAATCCTAAGACCTCACTTTGGGACCTTCTTGAATCTACTCT AACTTATCAGCATAGGACTTATGCTGAAGCCATTAAGAAGGCAATAGCAAAACCAGTTGCAAGCTAA
Protein sequence (LotjaGi3g1v0171900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAARVDLDGNPIKPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDTLPWAGRIHFHRLNIKHDSRL EGLIKMSDLTINLAAICTPADYNTRPLDTIYSNFIDALPVVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQ RWSYACAKQLIERLIYAEGAENGMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGESQRT FIYIKDAIEAVLLMIENPARANGHIFNVGNPHNEVTVRQLAEMMTKVYSKVSEEAPLENPAIDVSSKEFYGEGYDDSDKR IPDMTIINKQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKAIAKPVAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 364 | 358 | 1.1E-220 | – | |
| PANTHER | 7 | 364 | 358 | 1.1E-220 | – | |
| Gene3D | 15 | 360 | 346 | 2.0E-87 | – | |
| CDD | 16 | 353 | 338 | 7.34723E-110 | – | |
| SUPERFAMILY | 16 | 351 | 336 | 4.28E-51 | ||
| Pfam | 17 | 269 | 253 | 7.5E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi3g1v0171900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…