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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0173200 |
| Transcript ID | LotjaGi3g1v0173200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arogenate dehydratase; TAIR: AT1G08250.1 arogenate dehydratase 6; Swiss-Prot: sp|Q9SGD6|AROD6_ARATH Arogenate dehydratase/prephenate dehydratase 6, chloroplastic; TrEMBL-Plants: tr|I1MS62|I1MS62_SOYBN Arogenate dehydratase; Found in the gene: LotjaGi3g1v0173200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24014762..24017203) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGGAAGAAACGTAGAACCAGCATTATATACATATAAAATTATAAATATAAAATATATATATATATACCCCATATTTT TATATATAAAAAAATACATGTAGGTGAGTGTATGGCTAGATAAGGGGGTAGGTGTGCGATTTTGACCAAATGACCTCAAT CAGCAGCATCCCTTCAAGACTTGGTATGTAGTATGCAGCTTCTCATCCAATAATATATAAACCCCATTAACCAAACCATT TTCTCTCAGCTTCAGGTTTCTTTTACACAAATCAGAAAACCAAGCTTCAAAGTTCAACCAACCAACACTCCCAATTCTCC AAACAAAAACCACACACTACCCAATTTTCCATTTCAATATGCAGTCTCTATCACCGCCTTCATCTTCCACCACACTCAAC CCTATCATTCGCCCTCAACTTTCCCAGAACCGGGTCCGGTTCACCGTGAAATGTGGTTACCGGCTCGAACCGGGTAGCTA CGGAGTCGGAACAAGCCGAGCCGACTGGCAAAGCTCCTGCGCCATATTAGCCAGCAAGGTTGTTTCCCAGGAGCAATCTC CGACTGACCAAAATGGCAGCGCCGCCGACAAGCTCGCCACCGTCAACGGCCACAAATCCGCCAAGGCAGACCTTCAGCTG GTTCCTATAGGAAACCTCGCCGGAGAAATCAAAGCGATCCAGCCGAAGCCGCTGACAATCTCCGACCTCGCGCCGGCTCC GATGCACGGCTCGACTCTCCGCGTCGCGTACCAGGGCGTCCCCGGCGCGTATTCCGAGGCTGCGGCGGGGAAGGCTTACC CGAACTGCGAGGCCATCCCGTGTGACCAATTCGAGGTAGCGTTCCAGGCGGTGGAGCTTTGGATCGCCGACCGCGCTGTC CTACCAGTAGAAAACTCCCTCGGCGGCTCAATCCACCGTAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGG AGAAGTCCAACTTCCAGTCCACCACTGCCTCCTCGCCCTCCCCGGAGTCCGCAAGGACTATCTCACGCGCGTGATTTCCC ACCCTCAAGCACTCTCCCAGTGCGAGCACACGTTAACCAAACTAGGCCTCAACGTGGCGCGTGAGGCCGTCGACGACACA GCGGGAGCAGCGGAATACATCGCGGCGAACAACCTCCGCGACACCGCCGCCATAGCAAGCGCACGCGCGGCGGAGCTATA CGGATTACAAGTGATGGCGGATGGGATCCAAGATGACCCGAGCAACGTGACCCGATTCGTGATGCTGGCACGGGAACCGA TAATTCCACGGACTGATCGGCCGTTCAAGACGAGCATTGTGTTCGCGCATGATAAAGGGACTTCGGTGTTGTTCAAGGTG CTATCGGCGTTTGCATTTCGGAATATCAGTTTGACGAAGATTGAGTCGCGGCCGCACCGGAACCGGCCGATTCGGCTGGT GGATGATGCGAATGTGGGGACGGCGAAGCACTTTGAGTATCTGTTTTACGTGGATTTCGAGGCGTCGATGGCGGAGGTTA GGGCGCAGAATGCTTTGGCGGAGGTGCAGGAATTCACGTCGTTCTTGCGAGTGTTGGGGAGTTACCCCATGGATATGACG CCCTGGACTCCTTCTTCTAGGGGAGAATAGCAATGCCTTTTTTTCCCTCATTTTTTTTTTTTATTTTCTTTCTTTTTTTA TTTAATCCTATCAATAAAAAAAAGGTGTCATGTTCAATCAATTCTGAATTTTGTGAATAAGAGATAAAATGATTATTTTG ATTATCCTTCACACCATTGACCTTGCATTTTTATTTGTGTTTATTTATTTGTATAGAGCTCATTTTTTGTCTTTTGAGAA ATTGTTATTTATCCTTCTAGGTAAATGGTTTTTTTTTTCAGAATTAAAACTGTATTGACCTAGCTTGTTTGCAAGATTTA CACTCATTTTCATTTTGTGCATTGGAAACAAGCCTAAATTAGACAAGTAGGCTCTTAGTTTGGTTTTTAGGAAATGGAAA ATACTAAAAGTTATCATTTGCATTTTTTAATGTTTTTTCATTCATAACATAATGTTAAATATATAAGAATTTACATATTT TGTCTCCATGACTCCATCCATGGTATATAAGTAGATGGAGCAATTGTCATCGCAGTAGCTTATAAAATCATCTAGGGAGG TGCTGATTGAGGAAGGAAGCGGTTGAATCTTTGCTAGGAAGAGCTTCTATGGCGGGGGTGATGAGGATGAACTAGGGGTT TGAGTGTTGTGTTTGAGCTTGAGAGGGGTCCCTGGGCTACGAAGACATTATGATGCCTAAGTTAGTGGCTGATCTATTCA GTAAAATCTCTTAGATATGAACTATGAAGAATAGATAGCGAACCTACCCCCTCTTGTGAGAGAGTCTTTTGTAGGGTAGG AGTAACTCATAGGGTGTCAGAAGTGCCTAAAATCTAGGTGCA
CDS sequence (LotjaGi3g1v0173200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTCTCTATCACCGCCTTCATCTTCCACCACACTCAACCCTATCATTCGCCCTCAACTTTCCCAGAACCGGGTCCG GTTCACCGTGAAATGTGGTTACCGGCTCGAACCGGGTAGCTACGGAGTCGGAACAAGCCGAGCCGACTGGCAAAGCTCCT GCGCCATATTAGCCAGCAAGGTTGTTTCCCAGGAGCAATCTCCGACTGACCAAAATGGCAGCGCCGCCGACAAGCTCGCC ACCGTCAACGGCCACAAATCCGCCAAGGCAGACCTTCAGCTGGTTCCTATAGGAAACCTCGCCGGAGAAATCAAAGCGAT CCAGCCGAAGCCGCTGACAATCTCCGACCTCGCGCCGGCTCCGATGCACGGCTCGACTCTCCGCGTCGCGTACCAGGGCG TCCCCGGCGCGTATTCCGAGGCTGCGGCGGGGAAGGCTTACCCGAACTGCGAGGCCATCCCGTGTGACCAATTCGAGGTA GCGTTCCAGGCGGTGGAGCTTTGGATCGCCGACCGCGCTGTCCTACCAGTAGAAAACTCCCTCGGCGGCTCAATCCACCG TAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGAGAAGTCCAACTTCCAGTCCACCACTGCCTCCTCGCCC TCCCCGGAGTCCGCAAGGACTATCTCACGCGCGTGATTTCCCACCCTCAAGCACTCTCCCAGTGCGAGCACACGTTAACC AAACTAGGCCTCAACGTGGCGCGTGAGGCCGTCGACGACACAGCGGGAGCAGCGGAATACATCGCGGCGAACAACCTCCG CGACACCGCCGCCATAGCAAGCGCACGCGCGGCGGAGCTATACGGATTACAAGTGATGGCGGATGGGATCCAAGATGACC CGAGCAACGTGACCCGATTCGTGATGCTGGCACGGGAACCGATAATTCCACGGACTGATCGGCCGTTCAAGACGAGCATT GTGTTCGCGCATGATAAAGGGACTTCGGTGTTGTTCAAGGTGCTATCGGCGTTTGCATTTCGGAATATCAGTTTGACGAA GATTGAGTCGCGGCCGCACCGGAACCGGCCGATTCGGCTGGTGGATGATGCGAATGTGGGGACGGCGAAGCACTTTGAGT ATCTGTTTTACGTGGATTTCGAGGCGTCGATGGCGGAGGTTAGGGCGCAGAATGCTTTGGCGGAGGTGCAGGAATTCACG TCGTTCTTGCGAGTGTTGGGGAGTTACCCCATGGATATGACGCCCTGGACTCCTTCTTCTAGGGGAGAATAG
Protein sequence (LotjaGi3g1v0173200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSLSPPSSSTTLNPIIRPQLSQNRVRFTVKCGYRLEPGSYGVGTSRADWQSSCAILASKVVSQEQSPTDQNGSAADKLA TVNGHKSAKADLQLVPIGNLAGEIKAIQPKPLTISDLAPAPMHGSTLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEV AFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKDYLTRVISHPQALSQCEHTLT KLGLNVAREAVDDTAGAAEYIAANNLRDTAAIASARAAELYGLQVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSI VFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFT SFLRVLGSYPMDMTPWTPSSRGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 40 | 421 | 382 | 7.4E-225 | – | |
| PANTHER | 40 | 421 | 382 | 7.4E-225 | – | |
| Gene3D | 123 | 211 | 89 | 2.8E-29 | – | |
| CDD | 126 | 307 | 182 | 1.12554E-87 | – | |
| ProSiteProfiles | 128 | 305 | 178 | 46.504 | ||
| SUPERFAMILY | 128 | 311 | 184 | 8.9E-58 | – | |
| Pfam | 129 | 307 | 179 | 3.4E-58 | ||
| Gene3D | 212 | 293 | 82 | 3.6E-32 | – | |
| ProSitePatterns | 281 | 303 | 23 | - | ||
| SUPERFAMILY | 300 | 412 | 113 | 8.7E-20 | – | |
| Gene3D | 312 | 413 | 102 | 2.6E-31 | – | |
| CDD | 317 | 410 | 94 | 9.04859E-31 | – | |
| ProSiteProfiles | 319 | 410 | 92 | 10.555 | ||
| ProSitePatterns | 345 | 352 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Prephenate dehydratase activity | Catalysis of the reaction: prephenate = phenylpyruvate + H2O + CO2. | ||
| Biological process | L-phenylalanine biosynthetic process | The chemical reactions and pathways resulting in the formation of L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid. |
Expression pattern of LotjaGi3g1v0173200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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