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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0174100 |
| Transcript ID | LotjaGi3g1v0174100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stress responsive A/B barrel domain protein; TAIR: AT5G22580.1 Stress responsive A/B Barrel Domain-containing protein; Swiss-Prot: sp|Q9FK81|Y5258_ARATH Stress-response A/B barrel domain-containing protein At5g22580; TrEMBL-Plants: tr|I3SYE0|I3SYE0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0174100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24124646..24127943) extracted from Lotus japonicus Gifu genome v1.2.
CTATAGTCAGATTAAACGTGTCTAGTTAGTGGAAAAAACGTGACTTGATATAAACTTAATATTCAAATCTCATGAAAAAT TAACTCAGTTTGTTAAAGTTATTGATGCAAATGTAGAAAAACAGAAAATCATGTTAGAATTTGTGAAAGCCAAGACGAGC TATGTATGTACGAGAAGATGAAAGTCACTTGGAGGTCATTGTTGTTCTTCCCTCCCCTAAGATAGAGCCTGGAAGCCTAG TACGTAGTTCAAGCAAAGATTCCTTAACGATGTCGATAGCTGCACAACATGTCCATCCAAGTCCAATAATTTACCCTGGC GGTGGTGCACGTGGTTAGGACATGGAGAAAAGTGCAGCGACCACCACTCCTTTTTCTGCACCACACAGCACAAAAGAAAA AAGGTCCTTCCTCTTCCTAGCATCATGATGATGATGTTTTCTCAAAATCAGGCCAAGGTTCACTCAAAACTTGTGTAAAG AAATGACACCAAGGGGACCCCATTCATGTGCCAGGACAATGGCACTCAGACAATTTTTCACTGTTGAATTGGAAAGAAGA AGTTGAAACATTGGTGGGTCTACTTATGAAAGAAACTTGTACCTTTTCCTAAGGTTGAGCTGAAGATGCTGTCTCCTACA ACTTTTTGGTAATTGATTGCTGCCAACAGGGCAGTGAAATGAATAATCGTGGGGTTCTGACAATTTGACAGATTGAAATG AGACCTTGAGGTATGACATGCAAATTGTGAGTATATATTAGGCTGCTAGTTACAAGCTTTGGTTCACAGCTACTTGGCTA TGGGGGAGTTCAAGCACTTTGTAATTGTTAAGTTCAAGGAAGATGTGGTTGTGGAAGAGCTGACAAAAGCGATGGAGAAG CTGGTCTCAGAAATTGATGCTGTTAAGTCCTTTGAATGGTACGTTTTCTGCATTTACCTCTTTTCTCATAATCAGTGCGG AAGCTGTTCATAAAAATTTCAGTTTATAATTGATTTTGGCTTTAGAATTCATATCGTGTTGGGAAACCTCATAATCAATC TATTATGGCAGAGTAAAGTCAATACAAGATTAAAATATTGATGTTTGGGAGGAGTTTTGGAGAATTAGTTTCCGACTCAA AATCTATTTCGATAGAAGATAGAGATAATAGTTTCTACGTTCCACATAGTGTATGTTTGGATCAAGGTTTGGGTTTGCGA AATTAGTTATGGTATAATTGGTTCTTACATAGTCCAGTATTGTAAATGTGTGTTAGAATAAAGTAATTTATGTTTGGATA CCTATATGAAAAAGTGAGCTTTGGATGGTAATGTTATATAATTCATATATAAAATCTCATAATTGATTATGTTAAACGCA GAAGCAATTATTTACTGTTACAAGTAGAATGATTTTTTATAATTGATTATGCTTTACTGGTATACCCAAACATCATGTCA ACCAGTTAGAATTAATTTTAACCAAGTAGAATTTTTGAACTTGTAACCAAGTAAAATTGATCTTATAAAATAAATTGTGA GATTTTATAGCTCAATTTCACAATATTACCCAACAAATTTCACTTTTTTTAAACATAAAATTACTTCACTTTCAACTCAC TTTTAGTATAATCAAGTCTACCAAAATCAATTGTGACAAACATTAATCCAAACATGCATTGAATCGTAGAAGAATTTAAA AACTAAATATAACTAAATATAAGCACAAGCAGTTAAAGATTTTATGATCCTTGGGTCTTTCTTTGAAGCATGGGAATTCC CATTCATTTATGGATATTTCATATTTACTTACCATCATACCATTTTTCATATCATATGCTTACATTTGTCTTGAACAGGG GACAGGACATTGAAAGCCTAGATATCCTGAGGCAAGGTTTCACTCATGCTTTCTTGATGACATTCAGCAAGAAAGAAGAC TTTGCTGCATTTCAGGGCCACCCAAATCATGTTGAGTTCTCTGCAACATTTTCATCAGCTATTGAGAAGATTGTGGTGCT GGATTTCCCATCCACTCTTGTCAAGCCGCCAGCAGCTGCATGATTCTGAAGATGTTTTAAGCAATAAAGATTCCAACTTT AAGAGTTGTATCTGTTTGGTGTATGCATGTATCATGTATGTGCTTGTGCCCCCTATTTGTAGTTTTGGTTATGGATTGTT TTGCCACCGCTTCTCATGCAGTTTGAATTCCTACTATGACTTGTGAGTAGTGAATGATAAAGATGAACTAGTCCTTTTGC CTTTTGCCTTCTAATGATGTGTATCAAACTCAAAAGTGTTTCTTCCCCTTTTTGGTATCTTACATTGATCAAGTGAAAAA TTCCTTGACCATACAAAAAAAGAAGTGAACGGTTCTGAGCTACAAGTGACAACAAATAGACCTTCATTAACTTGTGAGAG AATAACATCACTTACATTGTCTAGAAAAGCCTAGTCACTAGTCAGAAGTGCTACTCTACCAGGGCACAGAGCAAGAACAT GCATTAAGTGCAAAGCTCATTACAGCCCCACCAAGGCACCAACACAATCCTTTGACCCTATTTAAAATGTTCATTACAGT CTTTAAGTACCATTTTCTGAATGTCATAGAAGTTGCCTTTTTTTATGTGTTATGGGCCAGACTCTCTGCTCTAAACTATT CAACCCACTTAGCTACTCCTAGCCCAAGTCACGGTCCGGGCTAAGGTGGCCCAAGTTCAACAACATTCATTTAAGTGTCG AAGTCTCTTTTGTAGTAAGACTTGCTATCTTCTGTATTTTTTTTGCCAAGCCCATAAGTGGGAAGGTTTACTTTTGACCC ATGTGAACTACAATTCTCTACATTTATCTGAAAGAATAATTAGCATAAGTACTCCACAAACTTTGTGACTGGTTCTGAAA CCTACCATCTTTTTCCTTGAAATGGACCGATCACTCAATCCTTTCACGGTTCAATTGGTCGACATATGAACAGAGGAATA TAACAAACGTGGTAATGAAAGCTCCCATCATGCCATTAAAATGGTGAAGCTTGGTTAGAATGATTTTTTTAATAGGCAAA TGTTAGTTGGTAACTTAATCTCTAATTAAAATTCGAACTTTAAACTATTCACCATTCATCTCACCTAACTCTTAGAATGA TTTTGATGGTAAAATGGCCCACCCAACATCAACTATTATCCTTCTAGAACTGTTCATGCTAAGTGCCCTTTGAATTGTGT AGGCTTTAAGGCATTTAATTACTTTGAGAGGCAAATGGGGCCTCATCAGGTACTTGTACCCATCAGCAGATGGGAAGAAA TAAGAAAATGTAATAAAT
CDS sequence (LotjaGi3g1v0174100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAGTTCAAGCACTTTGTAATTGTTAAGTTCAAGGAAGATGTGGTTGTGGAAGAGCTGACAAAAGCGATGGAGAA GCTGGTCTCAGAAATTGATGCTGTTAAGTCCTTTGAATGGGGACAGGACATTGAAAGCCTAGATATCCTGAGGCAAGGTT TCACTCATGCTTTCTTGATGACATTCAGCAAGAAAGAAGACTTTGCTGCATTTCAGGGCCACCCAAATCATGTTGAGTTC TCTGCAACATTTTCATCAGCTATTGAGAAGATTGTGGTGCTGGATTTCCCATCCACTCTTGTCAAGCCGCCAGCAGCTGC ATGA
Protein sequence (LotjaGi3g1v0174100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEFKHFVIVKFKEDVVVEELTKAMEKLVSEIDAVKSFEWGQDIESLDILRQGFTHAFLMTFSKKEDFAAFQGHPNHVEF SATFSSAIEKIVVLDFPSTLVKPPAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 102 | 102 | 7.1E-52 | – | |
| Gene3D | 1 | 107 | 107 | 6.5E-38 | – | |
| PANTHER | 1 | 102 | 102 | 7.1E-52 | – | |
| SUPERFAMILY | 2 | 98 | 97 | 9.83E-28 | ||
| ProSiteProfiles | 4 | 96 | 93 | 26.78 | ||
| SMART | 4 | 98 | 95 | 7.5E-22 | ||
| Pfam | 5 | 97 | 93 | 1.1E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0174100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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