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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011008
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.454s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v1133720.1
n.a. Stress responsive A/B Barrel Domain [Theobroma cacao] gi|508786293|gb|EOY33549.1| chr3 15396925 15398986 -
2 domain predictions
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Lj3g3v2995790.1
n.a. Stress responsive alpha-beta barrel domain protein [Arabidopsis thaliana] gi|15225120|ref|NP_180725.1| chr3 37267580 37268463 -
2 domain predictions
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Lj3g3v2995900.1
n.a. Stress responsive alpha-beta barrel domain protein [Arabidopsis thaliana] gi|15225120|ref|NP_180725.1| chr3 37300859 37301720 -
2 domain predictions
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Lj4g3v2179320.1
n.a. Stress responsive alpha-beta barrel domain protein [Arabidopsis thaliana] gi|15225120|ref|NP_180725.1| chr4 30182111 30182893 +
2 domain predictions
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Lj4g3v2179330.1
n.a. Stress responsive alpha-beta barrel domain protein [Arabidopsis thaliana] gi|15225120|ref|NP_180725.1| chr4 30183759 30186112 +
2 domain predictions
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Lj4g3v2917650.1
n.a. Stress responsive alpha-beta barrel domain protein isoform 1 [Theobroma cacao] gi|508710330|gb|EOY02227.1| chr4 38840342 38843520 +
2 domain predictions
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Lj4g3v2917650.2
n.a. Stress responsive alpha-beta barrel domain protein isoform 1 [Theobroma cacao] gi|508710330|gb|EOY02227.1| chr4 38840342 38843520 +
2 domain predictions
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Lj6g3v1201360.1
n.a. Stress responsive alpha-beta barrel domain protein [Arabidopsis thaliana] gi|15225120|ref|NP_180725.1| chr6 14885000 14886028 -
2 domain predictions
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LotjaGi3g1v0174100.1
n.a. Stress responsive A/B barrel domain protein; TAIR: AT5G22580.1 Stress responsive A/B Barrel Domain-containing protein; Swiss-Prot: sp|Q9FK81|Y5258_ARATH Stress-response A/B barrel domain-containing protein At5g22580; TrEMBL-Plants: tr|I3SYE0|I3SYE0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0174100 LjG1.1_chr3 24124646 24127943 -
2 domain predictions
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LotjaGi3g1v0174100.2
n.a. Stress responsive A/B barrel domain protein; TAIR: AT5G22580.1 Stress responsive A/B Barrel Domain-containing protein; Swiss-Prot: sp|Q9FK81|Y5258_ARATH Stress-response A/B barrel domain-containing protein At5g22580; TrEMBL-Plants: tr|I3SYE0|I3SYE0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0174100 LjG1.1_chr3 24125901 24127144 -
2 domain predictions
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LotjaGi3g1v0479200.1
n.a. Stress responsive A/B barrel domain protein; TAIR: AT2G31670.1 Stress responsive alpha-beta barrel domain protein; Swiss-Prot: sp|Q9SIP1|UP3_ARATH Stress-response A/B barrel domain-containing protein UP3; TrEMBL-Plants: tr|I1LY42|I1LY42_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0479200 LjG1.1_chr3 89580937 89581788 -
2 domain predictions
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LotjaGi4g1v0322200.1
n.a. Stress responsive A/B barrel domain protein; TAIR: AT3G17210.1 heat stable protein 1; Swiss-Prot: sp|Q9LUV2|POP3_ARATH Stress-response A/B barrel domain-containing protein HS1; TrEMBL-Plants: tr|A0A151TDN5|A0A151TDN5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0322200 LjG1.1_chr4 70052737 70058435 -
2 domain predictions
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LotjaGi4g1v0326900.1
n.a. Stress responsive A/B barrel domain protein; TAIR: AT2G31670.1 Stress responsive alpha-beta barrel domain protein; Swiss-Prot: sp|Q9SIP1|UP3_ARATH Stress-response A/B barrel domain-containing protein UP3; TrEMBL-Plants: tr|A0A1J7I2B0|A0A1J7I2B0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0326900 LjG1.1_chr4 70516510 70520937 -
2 domain predictions
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LotjaGi4g1v0423700.1
n.a. Stress responsive alpha-beta barrel domain protein; TAIR: AT2G32500.2 Stress responsive alpha-beta barrel domain protein; Swiss-Prot: sp|Q1MND5|TRPA_RHIL3 Tryptophan synthase alpha chain; TrEMBL-Plants: tr|A0A151TEY5|A0A151TEY5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423700 LjG1.1_chr4 79867418 79870527 +
2 domain predictions
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LotjaGi6g1v0226200.1
n.a. Stress responsive A/B barrel domain protein; TAIR: AT2G31670.1 Stress responsive alpha-beta barrel domain protein; Swiss-Prot: sp|Q9SIP1|UP3_ARATH Stress-response A/B barrel domain-containing protein UP3; TrEMBL-Plants: tr|A0A072TGG6|A0A072TGG6_MEDTR Stress responsive A/B barrel domain protein; Found in the gene: LotjaGi6g1v0226200 LjG1.1_chr6 53226153 53228029 -
2 domain predictions
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