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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0174100 |
| Transcript ID | LotjaGi3g1v0174100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stress responsive A/B barrel domain protein; TAIR: AT5G22580.1 Stress responsive A/B Barrel Domain-containing protein; Swiss-Prot: sp|Q9FK81|Y5258_ARATH Stress-response A/B barrel domain-containing protein At5g22580; TrEMBL-Plants: tr|I3SYE0|I3SYE0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0174100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24125901..24127144) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGGAGTTCAAGCACTTTGTAATTGTTAAGTTCAAGGAAGATGTGGTTGTGGAAGAGCTGACAAAAGCGATGGAGAA GCTGGTCTCAGAAATTGATGCTGTTAAGTCCTTTGAATGGTACGTTTTCTGCATTTACCTCTTTTCTCATAATCAGTGCG GAAGCTGTTCATAAAAATTTCAGTTTATAATTGATTTTGGCTTTAGAATTCATATCGTGTTGGGAAACCTCATAATCAAT CTATTATGGCAGAGTAAAGTCAATACAAGATTAAAATATTGATGTTTGGGAGGAGTTTTGGAGAATTAGTTTCCGACTCA AAATCTATTTCGATAGAAGATAGAGATAATAGTTTCTACGTTCCACATAGTGTATGTTTGGATCAAGGTTTGGGTTTGCG AAATTAGTTATGGTATAATTGGTTCTTACATAGTCCAGTATTGTAAATGTGTGTTAGAATAAAGTAATTTATGTTTGGAT ACCTATATGAAAAAGTGAGCTTTGGATGGTAATGTTATATAATTCATATATAAAATCTCATAATTGATTATGTTAAACGC AGAAGCAATTATTTACTGTTACAAGTAGAATGATTTTTTATAATTGATTATGCTTTACTGGTATACCCAAACATCATGTC AACCAGTTAGAATTAATTTTAACCAAGTAGAATTTTTGAACTTGTAACCAAGTAAAATTGATCTTATAAAATAAATTGTG AGATTTTATAGCTCAATTTCACAATATTACCCAACAAATTTCACTTTTTTTAAACATAAAATTACTTCACTTTCAACTCA CTTTTAGTATAATCAAGTCTACCAAAATCAATTGTGACAAACATTAATCCAAACATGCATTGAATCGTAGAAGAATTTAA AAACTAAATATAACTAAATATAAGCACAAGCAGTTAAAGATTTTATGATCCTTGGGTCTTTCTTTGAAGCATGGGAATTC CCATTCATTTATGGATATTTCATATTTACTTACCATCATACCATTTTTCATATCATATGCTTACATTTGTCTTGAACAGG GGACAGGACATTGAAAGCCTAGATATCCTGAGGCAAGGTTTCACTCATGCTTTCTTGATGACATTCAGCAAGAAAGAAGA CTTTGCTGCATTTCAGGGCCACCCAAATCATGTTGAGTTCTCTGCAACATTTTCATCAGCTATTGAGAAGATTGTGGTGC TGGATTTCCCATCCACTCTTGTCAAGCCGCCAGCAGCTGCATGA
CDS sequence (LotjaGi3g1v0174100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAGTTCAAGCACTTTGTAATTGTTAAGTTCAAGGAAGATGTGGTTGTGGAAGAGCTGACAAAAGCGATGGAGAA GCTGGTCTCAGAAATTGATGCTGTTAAGGGACAGGACATTGAAAGCCTAGATATCCTGAGGCAAGGTTTCACTCATGCTT TCTTGATGACATTCAGCAAGAAAGAAGACTTTGCTGCATTTCAGGGCCACCCAAATCATGTTGAGTTCTCTGCAACATTT TCATCAGCTATTGAGAAGATTGTGGTGCTGGATTTCCCATCCACTCTTGTCAAGCCGCCAGCAGCTGCATGA
Protein sequence (LotjaGi3g1v0174100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEFKHFVIVKFKEDVVVEELTKAMEKLVSEIDAVKGQDIESLDILRQGFTHAFLMTFSKKEDFAAFQGHPNHVEFSATF SSAIEKIVVLDFPSTLVKPPAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 98 | 98 | 5.1E-45 | – | |
| Gene3D | 1 | 103 | 103 | 4.8E-31 | – | |
| PANTHER | 1 | 98 | 98 | 5.1E-45 | – | |
| SUPERFAMILY | 2 | 94 | 93 | 6.97E-22 | ||
| ProSiteProfiles | 4 | 92 | 89 | 21.104 | ||
| SMART | 4 | 94 | 91 | 1.9E-15 | ||
| Pfam | 5 | 93 | 89 | 2.1E-17 | ||
| Coils | 18 | 38 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0174100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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