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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0174900 |
| Transcript ID | LotjaGi3g1v0174900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aldo-keto reductase, putative; TAIR: AT2G27680.1 NAD(P)-linked oxidoreductase superfamily protein; Swiss-Prot: sp|Q27YU7|RSP5_CHLRE Flagellar radial spoke protein 5; TrEMBL-Plants: tr|K7LVP4|K7LVP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0174900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24273389..24276163) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGATGTGGCAGACGAGTGGTGGATGGGGCAGAATTGATAGGAATGCTGCTTCTGATGCTATGCTTAAATATGCTGAT GCTGGACTCACCACTTTTGATATGGCTGATATATGTATGCAACTTCCAACATGTTTGGTTTCATGTTAAAAACTTTCAGA ATCACTTATAACATGTTTGAATTAGTTTGTTTTTATTCAGAATCAATTCTGCCACCAGAAGCTACTCCGAGAAGCTTCTT CTCATAAATGATAGAAGTACTTGTCAAAATATTTCCATACATGCACTTATCCCTTCACAAAAGCTACCAGGAGTAGCTGC CTCCGGTTGCTTTCTGTTTGAAACCATGAACCTGCTTCCCCAGAAAGCAAAATTATTGCCTTCACTTGTGTACTAATAAT GTTATCCGCTAGAGGAATAGAGATTGTTCAAATTTGAGTGTGGGATATGATATTTAGATGTTATAGATGTGGATTCTTCT TTTTTAAGTTTTGCATGAAGGGTCATAACTTGTGAAAATTGTGTTCTCATTGTTGTGTTCTTTGGGTTTTGCAGATGGCC CTGCTGAAGATCTGTATGGGATTTTCATCAATCGAGTTCGTCGTGAGCGTCCACCAGAGTTATTGGAACAGGTCAGAGGG TGAGTTGATTATGTGACTGGATATTTTTTTTTCTTAACTCTTTTTTTTGCTTGATGAAAATACAGCAACTTTAGACTTGT ATTGGCTATTCAATATCCTATTAGACACTTTTAAATTGTTAGGAAAGAGATAGAGCAAACTATTGTCTTAGCTGTTGTTT CAATTGATTGATGCAGTCTCACTAAGTGGGTGCCACCCCCAGTTAAGATGACAAGTAGCTATGTAAGAGACAGCATTAAT GTTTCAAGGAAGAGAATGGATGTGGATTCCTTGGACATGCTTCAGTTCCATTGGTATTTAATCTCTCTCTCGCTTTCGCT CTCTTGTCATTTGATGTTCTGAAATGGTCAAGAATTACAGTTCTTGCCTAACATTTTAAGTTTTCTGGGAGAATTAAACC ATCAACATTATCCATGATGTGAAACCCATTCATTTTGCTTGCTAGTGCATTACTGAAATAAATGAAGAATTGATTTTCAT CATCTAGTTGAACTACTATTGAAGATAACTCTGATTTCACTGAAGTTTAAAATTCTTCTGATAAGTTTCCTCTATCTATA ATGGATTTAGGTGGGATTATTCAAATACAGGTTACATTGATGCACTTAAACACCTTACAGACTTAAAAAACGAAGGTTAG TTTTGTTCCTGAGTAACAGTTGATAATCACATGAAAATTCCCATTTCTTGATTTGAAGATGATATCAACCTACTTCAGTT GGCTCTGTACAGGTAAAATCAAGACTGTGGCTCTAACAAACTTTGATACAGAGAGACTACAAATCATTCTTGAAAATGAG ATTCCTGTTGTAAGCAATCAGGTAAATCCAAGTGCTTTAATTTCTCTCTCAACTCTTATTAATTAATGATGGTCCTTGAT TCGTATTAGTACCTTCACTTTCAGGTACAACATTCAATTGTTGACATGCGTCCCCAACAGAGAATGGCAGAGCTTTGTCA GCTTACAGGAGTCAAACTTATAACGTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACA CACACACACACACACCCCAACACACAGCAAGAAAACAAGTTATTTAAACCGCAGAAAATAGTTCTCGCGAATGAGATGAA AGAAAGTGAAGTAAAAGAAAAATTAAAATTGTTCTCTTAAGATATCAGTTTGTGATGCAGGTATGGGACAGTAATGGGTG GTCTATTGTCTGAAAAGTTCCTTGACACCAACATAAATATTCCTTTTGCTGGTCCCGCAATAAACACTCCTTCCCTCCAG AAGTACAAAAGGGTATGATATCATGAACTGTTGACCACCATTCTAGTGATAGTTTGAGAAACTTTCATAGAAAGTTTGTA TCCCCTCTGGTTTCATTATATTGGAAAACTGGTTTAGGTAAGACAAAAGAGACTGATGGTGGATGCTTAGGAAGGGTGGA GTTTGTTATATTCATTTGACATAGGCTTTGTTATGACATAAGTTGTTTTGAACTTATTTCCATAAACTGCTCAGATTAAC TTCTAAATAAGCGTTTATACCTACTACCTGGTTATAATCTGTTTTGAGTTCATTTCATTAAGGTTATCAAGTTAGTTTAT GAATAAGGGCTCATGCGAGTTAATTGTTATAAGCGCCTAAATAAGTTGTTCACCCAAACTCATCCATAGTTACATTCATG TTTTTTGCTATATTTTGGATGGTGTGGCAGATGGTAGATGCTTGGGGAGGATGGGGTTTGTTCCAGGGACTACTTCGGAC TCTTAAACAAGTAGCTACTAAACATGGTGTTTCGATCTCAACTGTTGCTGTGAAGTATGTGCTAGATCAGGTGAAGTTGA TTTCTACTCACTTACAAAAATTTGCTATTCTAATGGATTAAAATCTCATATTACATTGGACAAGCCCTGGTGGATATTCC TTTTATTTTGGTTCTGGTCAAACTTGCAGTCTGCAGTAGCAGGATCTATGGTTGGTGTAAGACTGGGCTTGTCGGACCAT ATTCGAGACACGAATGCTATCTTTTCACTTGTTCTTGATGAAGAGGATGTGAACAGCATAAAAGAAGCTGCAGGGAAAGG AAAGGATCTGCTTAAAGTGATTGGTGACTGTGGAGATGAGTATAGGCGTGCATGA
CDS sequence (LotjaGi3g1v0174900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATGTGGCAGACGAGTGGTGGATGGGGCAGAATTGATAGGAATGCTGCTTCTGATGCTATGCTTAAATATGCTGAT GCTGGACTCACCACTTTTGATATGGCTGATATATATGGCCCTGCTGAAGATCTGTATGGGATTTTCATCAATCGAGTTCG TCGTGAGCGTCCACCAGAGTTATTGGAACAGTCTCACTAAGTGGGTGCCACCCCCAGTTAAGATGACAAGTAGCTATGTA AGAGACAGCATTAATGTTTCAAGGAAGAGAATGGATGTGGATTCCTTGGACATGCTTCAGTTCCATTGGTGGGATTATTC AAATACAGGTTACATTGATGCACTTAAACACCTTACAGACTTAAAAAACGAAGGTAAAATCAAGACTGTGGCTCTAACAA ACTTTGATACAGAGAGACTACAAATCATTCTTGAAAATGAGATTCCTGTTGTAAGCAATCAGGTACAACATTCAATTGTT GACATGCGTCCCCAACAGAGAATGGCAGAGCTTTGTCAGCTTACAGGAGTCAAACTTATAACGTATGGGACAGTAATGGG TGGTCTATTGTCTGAAAAGTTCCTTGACACCAACATAAATATTCCTTTTGCTGGTCCCGCAATAAACACTCCTTCCCTCC AGAAGTACAAAAGGATGGTAGATGCTTGGGGAGGATGGGGTTTGTTCCAGGGACTACTTCGGACTCTTAAACAAGTAGCT ACTAAACATGGTGTTTCGATCTCAACTGTTGCTGTGAAGTATGTGCTAGATCAGTCTGCAGTAGCAGGATCTATGGTTGG TGTAAGACTGGGCTTGTCGGACCATATTCGAGACACGAATGCTATCTTTTCACTTGTTCTTGATGAAGAGGATGTGAACA GCATAAAAGAAGCTGCAGGGAAAGGAAAGGATCTGCTTAAAGTGATTGGTGACTGTGGAGATGAGTATAGGCGTGCATGA
Protein sequence (LotjaGi3g1v0174900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCGRRVVDGAELIGMLLLMLCLNMLMLDSPLLIWLIYMALLKICMGFSSIEFVVSVHQSYWNSLTKWVPPPVKMTSSYV RDSINVSRKRMDVDSLDMLQFHWWDYSNTGYIDALKHLTDLKNEGKIKTVALTNFDTERLQIILENEIPVVSNQVQHSIV DMRPQQRMAELCQLTGVKLITYGTVMGGLLSEKFLDTNINIPFAGPAINTPSLQKYKRMVDAWGGWGLFQGLLRTLKQVA TKHGVSISTVAVKYVLDQSAVAGSMVGVRLGLSDHIRDTNAIFSLVLDEEDVNSIKEAAGKGKDLLKVIGDCGDEYRRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 26 | 20 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 27 | 31 | 5 | - | – | |
| Phobius | 32 | 55 | 24 | - | – | |
| Gene3D | 52 | 306 | 255 | 2.7E-42 | ||
| Phobius | 56 | 319 | 264 | - | – | |
| PANTHER | 64 | 319 | 256 | 2.0E-142 | – | |
| PANTHER | 64 | 319 | 256 | 2.0E-142 | – | |
| Pfam | 66 | 298 | 233 | 9.4E-45 | ||
| CDD | 66 | 298 | 233 | 3.29544E-43 | ||
| SUPERFAMILY | 66 | 298 | 233 | 2.88E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0174900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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