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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0175900 |
| Transcript ID | LotjaGi3g1v0175900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT1G08290.1 WIP domain protein 3; Swiss-Prot: sp|Q9SGD1|ZWIP3_ARATH Zinc finger protein WIP3; TrEMBL-Plants: tr|I1LTU8|I1LTU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0175900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24450212..24453572) extracted from Lotus japonicus Gifu genome v1.2.
ATATAGTCCTTTATAAATAGAGAAATTCACAGCTAAACTAAAGGTATATACTCTCAAGAAAAATGGGTTTGAGGGAGTGC AATGTAGAAGACAAGAATCTATGCCTTCAAACCCCAAATTTCATTGAATGGCTCAAACCACCTTCATCAGTATCATTATC TCCTACTTCTTTGACAAAGCATGGAGTTATCAGGGAAACTATTCAGTTTTTGCCAAATTCAAGTGAGTTCATCCATAGAA AGCACTTGGAGGAAGACCATGAAGTTTTTGAAGTAAAACAAGAGAAGGTGGAACAGGTGACTGTGTCTTTGCACATTGGA TTGCCTAACACAGGATGTTCTGATGAGAAGAAGAGTGTTTTTTATCATGTTAAGGAAGAAGAAGAACCCGTGAAGAAAAC CTTACATGATGAGTGTTCTTTTAACCAAGAGAGAAGGTTTTGGATACCAACTCCTGCACAGATCCTTGTTGGTCCCATGC AGTTTTCTTGCTCCATATGCAGCAAGACCTTCAATAGATACAACAATATGCAGGTATTGGTTTTACTTTTCAACTTCCCA TGTGAAAAAATTGGATTTCATTCTATTAAACTATTTGCTCATAGATTATTTGATATATACAGACTAAAGAGCGCCTTTGG AATTGAAATTAATTTTAATTAGTCTGTGTTATAGAAGTATAGCGCCTTTGGAATGGAGCGAAGTTTGAGAATATTCAAAA AAGTAATTAAAATTTATGTATACAGGATAATAATTATTGGTGAGATATCAATTTACTAAGGAACTATATTATATTTATAG CATAAGACATCATGAGGGCTAGGTTTTCTTGACAAATTAATTTTAATTGTTTCTGTGATCAGGGAGTTCTATCATATAAT TCACGAAACTGCATACTATAGTAGTCTAGTTCATAGTGATTGGTATCAGCCTACATGGTTCTTTCATATGTCATTTTCTT TCGATATTTTTTTCATATTACCTGATATTCATTATGGATCAAACAACTCCGTCCCTCTTTTAGCTAATTTCTAATTTCTG CATATTAAGAAATTATTCGACAAGTTGTTCAAAAATAAAACATATTCAACAATTGATTTTAAAGTCAAAACTAATTCTAC GAAGAATCTTATAAAAATAGCTTTTGGTAGACAGAATTGATACTAAAGCTCATATATGTTAATAATATGTTTAATTTGAT AGTTTAATTAGCCTCTATATTTTCATATTGATAACAAATTTTTGCAGACACATATAATTTGAAATCTAAATAACCTCACC CATCCATGACAAGGCTGAATTTCTTAGAAAGCATTTGATGACAAAACTGTCAAACTTGAATTCTCTGCCCTTAATGTATA TATATCCTAGCTAGCCAACATCAAATATAGGTGTTTTACACGGTGGTGGTGATGATGAGTGTGGAGATAATCATCAAGAA AAAACAAAGAATCATTTATTTAAACATGATATATAAACATGACTAATTGATGACTGTCTTTTTTCTTCTTCTTTTGGTTT CTTTTGCTGGCAGCCTTAAAACTTTTAGCAAAAGGCTCCTTTTATCCGGTAGGATGTCAAATAGAAATTATCATTTCATA TCTTCATGCTTTTGTTTCCTTTTAGGCTTAAAACCTCAAAATACGAATAGCATATATAGGATCTTTTATTTGTCGGAATT TGACAGGATGCTATTGCTGAGGATAAAATCACAACATAAGTGAAAGTTCATGCAGTATAGTGCAAGATCTACTCTCTTAG CATACTTGTGAATCTTTGGAGAAAGAGAATTATGCCTTTGAAAACATTTTTTTGTAGAGAAGGCACAAATTGCCCCTCTT TATATCATATAGAACTGTTTGACTTGAAAACACAAATTAACCCAAAGTATTATCGGGTTCAAATTGAGAAGAAGTGCTTG TCTAGTACAAAATATAATATCAGTATGAATTATGAAACCCAATTTTTTATTCCATTGTAATCTCTATATATATTATCAAA TGTGGGGCTTAGTTTCAATCATAATTATTAGCCTACATAAGTGAGATTACGAAAACATGCTTTAAACTCAAACTTTCCTA GTACTCGGATACTAGCAATAGTTTTGACGAGTATTTGACCAATTAATTGAACTTTATCAGTGAGATTAACAATTAATTTG GCCATATAAGCAAGCTTGGCTTGAGGATTAATGTTGATGGCCTAATTTGAAGCATGTTAGGAATCAATTAGAAATGAGTT TGTCTGGAGTGGGCCTCTGCTCACCTCCATAGGGGTAGCGAGGATATAATCCTCCCCAGCTCGAGACCCCAGTATGTCAT TGGCACACTCATCATTTTTCTTACCAAAAAAAATGAACCTGCCTCGGCATAACTCACAAATTAACTTGAAACTTTACCCT TTCACAGATGCATATGTGGGGGCATGGATCTGAATTTAGAAAAGGACCAGACTCCCTCAGAGGAACACAACCAGCTGCTA TGCTAAGGCTACCATGCTATTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCCAAGCCCTTGAAGGAC TTCAGAACGCTCCAAACCCACTACAAAAGAAAGCATGGAGCAAAACCATTCATGTGCAGAAAATGTGCTAAAAATTTTGC AGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAATTGTGGTATTGCACTTGTGGTTCAGATTTCAAGCACA AGAGATCTCTTAAAGATCACATTAGATCCTTTGGAAAAGGTCACTCCCCACATCCTTCTCTTGAAGGCTTTGACGACGAG AGAGAATGCGTTACCGGATCCGATGAGGATGAAGTTGCTCATGCATGATCATGATCTAACATGCTATATAGCATTCCTTC ACCACAATAATTATAAAGAGTAGTAGTAACTTTTACAGACTTGTGCTCCTTGCTCAGTGATCCGGGATCCGGCTTGGCTG CAGTCAATTTCTGGTGTAGTTGACTGCAGCGACTACACCAAAAATTGACTGCAAAGAATCCATTTCCGGTGGTAATATGC TAGCTTGAATTATCGAGGTAAGAGTTTTCTCTGTATTTAATTAATAAGATGGTAGTTATACCTCAAGTGATGAAGCATGT GAATTTTTTCTCATAGCTAGGAACGGAAAGAAGGTGTTACATGATGTTAAATTATTGTAACCGTCTCAATAGTGGAGAAA ATTTATCCGCTTCATTACTAAAAGGTAGTCCTCATCAATCTAGGACTTCAGTTCTGTAACTTCTGTTGTTGAAATCTTTA TAACACTTTAATGACATTTTACTACTACGGCTTATATTGATCCCTGGATTAATTAATAACTTCTAGATGATTGTACTATT C
CDS sequence (LotjaGi3g1v0175900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTGAGGGAGTGCAATGTAGAAGACAAGAATCTATGCCTTCAAACCCCAAATTTCATTGAATGGCTCAAACCACC TTCATCAGTATCATTATCTCCTACTTCTTTGACAAAGCATGGAGTTATCAGGGAAACTATTCAGTTTTTGCCAAATTCAA GTGAGTTCATCCATAGAAAGCACTTGGAGGAAGACCATGAAGTTTTTGAAGTAAAACAAGAGAAGGTGGAACAGGTGACT GTGTCTTTGCACATTGGATTGCCTAACACAGGATGTTCTGATGAGAAGAAGAGTGTTTTTTATCATGTTAAGGAAGAAGA AGAACCCGTGAAGAAAACCTTACATGATGAGTGTTCTTTTAACCAAGAGAGAAGGTTTTGGATACCAACTCCTGCACAGA TCCTTGTTGGTCCCATGCAGTTTTCTTGCTCCATATGCAGCAAGACCTTCAATAGATACAACAATATGCAGATGCATATG TGGGGGCATGGATCTGAATTTAGAAAAGGACCAGACTCCCTCAGAGGAACACAACCAGCTGCTATGCTAAGGCTACCATG CTATTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACGCTCCAAA CCCACTACAAAAGAAAGCATGGAGCAAAACCATTCATGTGCAGAAAATGTGCTAAAAATTTTGCAGTTAAAGGGGATTGG AGGACTCATGAGAAGAACTGTGGCAAATTGTGGTATTGCACTTGTGGTTCAGATTTCAAGCACAAGAGATCTCTTAAAGA TCACATTAGATCCTTTGGAAAAGGTCACTCCCCACATCCTTCTCTTGAAGGCTTTGACGACGAGAGAGAATGCGTTACCG GATCCGATGAGGATGAAGTTGCTCATGCATGA
Protein sequence (LotjaGi3g1v0175900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLRECNVEDKNLCLQTPNFIEWLKPPSSVSLSPTSLTKHGVIRETIQFLPNSSEFIHRKHLEEDHEVFEVKQEKVEQVT VSLHIGLPNTGCSDEKKSVFYHVKEEEEPVKKTLHDECSFNQERRFWIPTPAQILVGPMQFSCSICSKTFNRYNNMQMHM WGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCAKNFAVKGDW RTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFDDERECVTGSDEDEVAHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 293 | 293 | 9.2E-142 | – | |
| PANTHER | 1 | 293 | 293 | 9.2E-142 | – | |
| SUPERFAMILY | 127 | 164 | 38 | 1.38E-5 | ||
| Gene3D | 139 | 163 | 25 | 2.4E-6 | – | |
| SMART | 141 | 163 | 23 | 0.13 | ||
| ProSiteProfiles | 141 | 168 | 28 | 10.492 | ||
| ProSitePatterns | 143 | 163 | 21 | - | ||
| SMART | 188 | 220 | 33 | 190.0 | ||
| SUPERFAMILY | 211 | 245 | 35 | 3.31E-5 | ||
| Gene3D | 221 | 281 | 61 | 1.0E-5 | – | |
| SMART | 225 | 245 | 21 | 160.0 | ||
| MobiDBLite | 271 | 303 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0175900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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