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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0177000 |
| Transcript ID | LotjaGi3g1v0177000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1; TrEMBL-Plants: tr|A0A072V9E5|A0A072V9E5_MEDTR Ribosomal protein L1p/L10e family protein; Found in the gene: LotjaGi3g1v0177000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24621455..24623376) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGTATAGTTTACACTCTGCTCTTCTACTTTTCTCTGTTAATCGATTTATTTTGGTTTCCTCATGCGTTTTTCTGTT TAAAGTTTGTATTTTGTTAACTGGGTCAATGGAAATTATTCCAGAAAATGTAGAATTTTGAAACCCTAATTATTTTTGTG GTGTTGAGTTTGCGTGGTTTTTGATCTGTTTTGGGTGGTGATTGTGCAGCAAGCTGCAGAATGATGCTGTTAGGGAAGCT ATCTCTGGAATCATGACTGATTCCAAGGAGAAGAACCGGAAATTTGTGGAGACCATTGAGCTCCAAATTGGGTTGAAGAA CTACGACCCACAGAAGGACAAACGTTTCAGTGGCTCTGTCAAGTTGCCTCACATTCCTAGGCCCAAGATGAAAATCTGCA TGCTTGGAGATGCCCAGCATGTGGAGGAGGTAATAATCATCAATCTGCTCTGTGGGATTTTCAAATAGGTGCAATATGTG ATATACTGTTGGCTTTGAATACTGGATTGGATTCATTATTCTGCTCTTTTTTTTAAAGTATTATAACATGATATGTTGCT TTGAAGTATTTTTTTCCTTGTGTTCTTGCTATGTAGTTGTGTTGCATCTCTTGAATAAGCTTGAAATGACATGCTGCTGT GGTTATTGATTATCCTAGTTTAAGAGATTAGTAATGCGTTTGTTTCAGATAAAGCATAATGATTTTAGCTGTCAAATGTA ACATTAGCTGATTTATGTTCGGTTACACTATCTAAAATCATTTTCTTATTGTCTTTTGTAGCTTTTCCAAATAATCTGAT TTCATTTTTTACTGAAACAATGATTATTGAAATAGCTGATAAAACATCTTAAAATCAATAAAAATGAGTTTTGAATTAAA AAAAGTGACGTTTTCTAACAATACGCTGAAACAAACGCCCTTGTATGTCTTTCATTTCGGTTTATGGCGTTGATTTTGTC TGCGTGATTTGGATAATTTTTGAATATCCACCATTTGAGTGTTGCCCTTGTGTTAACGTCTATCACTTTAATCTGCACTC TGCAGGCTGAGAAGATAGGTCTTGAGTCCATGGATGTTGAAGCTTTGAAGAAGCTCAACAAGAATAAGAAGCTGGTGAAG AAGCTGGCTAAGAAGTACCATGCCTTTTTGGCTTCTGAAGCTGTGATCAAGCAGATCCCTCGTCTTCTGGGTCCTGGTCT TAACAAGGCAGGCAAGTTCATTATTCTATTGGTTTAGTATTTTAAACTGTTTTTGGAAATTCTGAGAGCATGTTTTGATT TACTTTTGTTTTGATCATTTTAAATTTGGCACTCTTCACATTTGCACTATTCATCTCATTTTTCAGTGCCATTTGCTTAA AATCATCTGAATGACTACTGCTGATTTTTTTTGAAATAGTTGTTACATTGTGCTTCTGCCGCATTTTGATTATGCTTTAC TTGTTTTGATACTTTGCAGGGAAGTTCCCTACACTTGTTACTCACCAGGAATCTCTAGAGTCAAAGGTCAATGAGACCAA GGCTATGGTGAAGTTCCAGCTGAAGAAGGTGCTCTGCATGGGTGTAGCTGTTGGCAACGTTAGTATGGAGGAAAAGCAAA TCTTCCAAAACGTACAATTGAGTGTCAACTTCCTCGTCTCCCTCTTGAAGAAAAACTGGCAAAATGTGAGTAGCTCACTC TCTATTCAGTAAAATCACTGGTTTCTTACTTTCTGTTTACTGTTGTTTTCTTAGAGTCATATTTATTGTGTAATAAAAAA ACTCATCTAGCGTAGGCGTATTCTTTTGTTAAATTAAATGATGTCCATTATGCCCTCAAATCCCATCCCTAGTTTAGTTG TAATATCACTGCATAGATGTGACCTAGTTTAACCTTAAATGCTATTTGGTGTACCATTTGCCTCAGATGTGGCAGTTCCT GA
CDS sequence (LotjaGi3g1v0177000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAAGCTGCAGAATGATGCTGTTAGGGAAGCTATCTCTGGAATCATGACTGATTCCAAGGAGAAGAACCGGAAATT TGTGGAGACCATTGAGCTCCAAATTGGGTTGAAGAACTACGACCCACAGAAGGACAAACGTTTCAGTGGCTCTGTCAAGT TGCCTCACATTCCTAGGCCCAAGATGAAAATCTGCATGCTTGGAGATGCCCAGCATGTGGAGGAGGCTGAGAAGATAGGT CTTGAGTCCATGGATGTTGAAGCTTTGAAGAAGCTCAACAAGAATAAGAAGCTGGTGAAGAAGCTGGCTAAGAAGTACCA TGCCTTTTTGGCTTCTGAAGCTGTGATCAAGCAGATCCCTCGTCTTCTGGGTCCTGGTCTTAACAAGGCAGGCAAGTTCA TTATTCTATTGGTTTAG
Protein sequence (LotjaGi3g1v0177000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIG LESMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFIILLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 136 | 134 | 2.1E-80 | – | |
| PANTHER | 3 | 136 | 134 | 2.1E-80 | – | |
| SUPERFAMILY | 3 | 133 | 131 | 5.76E-36 | ||
| CDD | 9 | 133 | 125 | 6.32994E-29 | ||
| Gene3D | 22 | 61 | 40 | 8.1E-42 | – | |
| Pfam | 22 | 133 | 112 | 1.2E-20 | ||
| Gene3D | 62 | 133 | 72 | 8.1E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0177000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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