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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0177200 |
| Transcript ID | LotjaGi3g1v0177200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT2G27500.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9ZQG9|E1314_ARATH Glucan endo-1,3-beta-glucosidase 14; TrEMBL-Plants: tr|I1M4C5|I1M4C5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0177200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24642032..24643512) extracted from Lotus japonicus Gifu genome v1.2.
TTGTCCATTGGGTTGAGCATCTATTCTCCATGCTCTCTTGCTTTCACCTTCAAAAAAATTCTTTTTCTGTTTGAGGTTGA TTTTTGATTGGTAATGGTACAAGACTTGGGGAATGGTTCTTTTTCTAACTATTTAGCATTGTGAATGAAGGGTGTTTGAA CTTTGAATGATTGTCTCTGAAACATTCTGATATTTCTATTTTTGTGTTTTCAGATTTTTGTGTGCTAACTCAAGGTCACA ATTTTGGAATCAACTATGGACAAATAGCTAACAATCTTCCTCCACCTTCTCGGGTGGCTGTTCTTATAAACTCTTTGAAT GTCAGCAGAATCAAACTCTATGATGCTGATCCTAATGTTCTCTCAGCATTCGCCAATTCAAATGTTGAATTCATCATAGG ACTTGGGAATCAGGATCTTCAGAGCATGAGAGACCCTTCTAAGGCACAAAGCTGGGTTCAACAGAATGTTCAACCTTATA TTTCACAGACCAAAATCACTTGCATCACAGTGGGGAATGAAGTCTACAATAGCAATGATACTAATCTCATGATCAACCTT CTCCCAGCAATGAAAAGTGTTTACAATGCACTTGTGAATCTTGGATTAGCACAGCAAGTTACTGTTACAACTGCACATTC TTTCAACATTTTATCAAATTCATTCCCTCCTTCATCTGGGACCTTTAGTCAAGGCTTGATTCAATATATTCAACCCCTTC TTGATTTCCATGCTCAGATCAAATCACCTTTCCTCATTAATGCTTATCCTTTCTTTGCATACAAGGCAGACCCAAAAAAT ATCCCTTTAAGCTATGTGTTGTTTCAGCCAAATTCCGGTTCTGTTGATCCAATGACCAATTTGCATTATGATAACATGTT GTATGCTCAGATTGATGCTGTTCACTTTGCCATCAAAGCTCTGGGGCATACAGATGTTGAAGTCAGGATTTCAGAAACTG GTTGGCCTTCTAAGGGGGACCCTGATGAGGTTGGAGCCACACCAGAGAATGCAGGAATTTATAATAGTAATTTGTTGAAG AGGATTCAGATGAAGCAAGGAACTCCTGCAAATCCTTCTGTTCCAATTGATATTTTTGTGTTTGCTCTTTTCAATGAAGA TATGAAGCCAGGTCCTATTTCAGAGAGAAACTATGGTCTTTATTATCCTGATGGCACCCCAGTTTACAACCTTGGAATTT CATCATCACAGTCACCAGGTTATCTCCCACAGATGGTTATAGAATCAAAATCAAATGTAAGTAGACTCATAAGAAATTTG AAAAAATTACTTTTTTTGTGAATTGAAAAGTTTCATTACCTTTAGTTCTTATTTTGTCTATTGAGTGTATTATAATTTGA TTGAGTAATTGTTGATGTATCTAATGCTCCAGTTGCTGTTTATCTGCAGGTTTTGTCCATTAATTTTCTCATCTACATAC TCACATGCTTGATGTTTGCTTGGGGGCTTTCAAGACCATAA
CDS sequence (LotjaGi3g1v0177200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGACCCTTCTAAGGCACAAAGCTGGGTTCAACAGAATGTTCAACCTTATATTTCACAGACCAAAATCACTTGCAT CACAGTGGGGAATGAAGTCTACAATAGCAATGATACTAATCTCATGATCAACCTTCTCCCAGCAATGAAAAGTGTTTACA ATGCACTTGTGAATCTTGGATTAGCACAGCAAGTTACTGTTACAACTGCACATTCTTTCAACATTTTATCAAATTCATTC CCTCCTTCATCTGGGACCTTTAGTCAAGGCTTGATTCAATATATTCAACCCCTTCTTGATTTCCATGCTCAGATCAAATC ACCTTTCCTCATTAATGCTTATCCTTTCTTTGCATACAAGGCAGACCCAAAAAATATCCCTTTAAGCTATGTGTTGTTTC AGCCAAATTCCGGTTCTGTTGATCCAATGACCAATTTGCATTATGATAACATGTTGTATGCTCAGATTGATGCTGTTCAC TTTGCCATCAAAGCTCTGGGGCATACAGATGTTGAAGTCAGGATTTCAGAAACTGGTTGGCCTTCTAAGGGGGACCCTGA TGAGGTTGGAGCCACACCAGAGAATGCAGGAATTTATAATAGTAATTTGTTGAAGAGGATTCAGATGAAGCAAGGAACTC CTGCAAATCCTTCTGTTCCAATTGATATTTTTGTGTTTGCTCTTTTCAATGAAGATATGAAGCCAGGTCCTATTTCAGAG AGAAACTATGGTCTTTATTATCCTGATGGCACCCCAGTTTACAACCTTGGAATTTCATCATCACAGTCACCAGGTTATCT CCCACAGATGGTTATAGAATCAAAATCAAATGTTTTGTCCATTAATTTTCTCATCTACATACTCACATGCTTGATGTTTG CTTGGGGGCTTTCAAGACCATAA
Protein sequence (LotjaGi3g1v0177200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRDPSKAQSWVQQNVQPYISQTKITCITVGNEVYNSNDTNLMINLLPAMKSVYNALVNLGLAQQVTVTTAHSFNILSNSF PPSSGTFSQGLIQYIQPLLDFHAQIKSPFLINAYPFFAYKADPKNIPLSYVLFQPNSGSVDPMTNLHYDNMLYAQIDAVH FAIKALGHTDVEVRISETGWPSKGDPDEVGATPENAGIYNSNLLKRIQMKQGTPANPSVPIDIFVFALFNEDMKPGPISE RNYGLYYPDGTPVYNLGISSSQSPGYLPQMVIESKSNVLSINFLIYILTCLMFAWGLSRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 265 | 265 | 2.1E-99 | – | |
| PANTHER | 1 | 264 | 264 | 1.2E-154 | – | |
| PANTHER | 1 | 264 | 264 | 1.2E-154 | – | |
| Phobius | 1 | 277 | 277 | - | – | |
| SUPERFAMILY | 3 | 256 | 254 | 1.05E-69 | ||
| Pfam | 5 | 256 | 252 | 2.2E-72 | ||
| TMHMM | 278 | 297 | 20 | - | – | |
| Phobius | 278 | 297 | 20 | - | – | |
| Phobius | 298 | 300 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0177200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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