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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0177700 |
| Transcript ID | LotjaGi3g1v0177700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | N-carbamoylputrescine amidase; TAIR: AT2G27450.1 nitrilase-like protein 1; Swiss-Prot: sp|Q9XGI9|AGUB_SOLLC N-carbamoylputrescine amidase; TrEMBL-Plants: tr|I3S967|I3S967_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0177700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24670973..24672765) extracted from Lotus japonicus Gifu genome v1.2.
TTGAAGGTCATTACTTCTGCCAGGCACAGAGAGAGGATTTCTTTCACAGAGCTAAGCCATATAATGGCCATCCTACAATT ATGAGGTAAAGAACTAAACAATGGCTTCTTCTATCTGCTTCTCAGTCAGTGTTTTCCCTATTATGGTGCTATCTAAGGGA CAGAAGAACAAATATTGACTATTAGACTTTTGTATGTATCATTCAGTTTGTAGTGAACCTTATTCTTCTTTCAATGTCCA TAATGCAGGATGCAGAAACTTGCGAAAGAGTTAGGCGTGGTCATACCTGTTAGCTTCTTCGAGGAGGCAAACAATGCGCA TTATAATTCAATAGCCATAATTGATGCTGATGGAACTGATCTTGGAATTTATAGAAAATCACATATTCCAGATGGACCAG GTATGCAATATTCAGGTCCTTATTGTCATTTAGTATGTGGCATCATAACTATCAAATTATCTCCCCTACAGGTTACGAGG AAAAGTTCTATTTTAATCCGGGTGATACTGGATTTAAGGTGAGGGTTAGGATAGCCTTGAGTGAAATGACATTTGTTTTG TGGTTCTTTTTTATGAATGGTGGATGTTGTGTAACATTGATGCTTTTGCTGAACAGGTTTTCCAAACTAAGTTTGCAAAA ATTGGAGTTGGTAAGAACTTGCTAATACTATGACTGTTTACTTACATCTATTATTTTGGCCTATCTCTACAGAGTATATC TCAAACGAATATTTAAAGTGATTGTATCAAGATTTCTAAGATAGAAAGAACGTTGACTAAAGAAAATTCTGCGTTTTGAC TTAGGCTTTATTATAGCAACCAAAAGCATTTAGAAGCTGCATTACTCATCTTTCTGCCAGTTAGTAAACTGAGCTGAAGG AAGGGAAGACTGAAGCTGTGAATAATTTTTTTTTAATTTTAATTAACTTTCATGTCAGCTATATGCTGGGATCAGTGGTT TCCTGAGGCAGCCCGAGCTATGGTGCTTCAAGGTGCTGAGATTTTATTTTATCCAACTGCTATTGGGTCTGAACCTCAAG ATGAAAACATTGACTCTCGTGACCATTGGAAACGAGTAATGCAAGGGCATGCTGGGGCCAATTTGGTAGGTTTTGGTACA CTATTTTCTAACCGACATATATTTTCATCTATATTACTGGTCTATGATGTGCATATCCTTTCTCTATCTGTGTACTTATG CTGTGCTCAACTGCTCGCAGTATTGACTTGAACTTTTTCCGCACTAGTTTTTGCATAGAAAAATCCCTGATACACCCTGC TGAAGTATGTATAAAACAATCAATTTTGTAAATTGCAGGTACCTCTTGTGGCTTCTAATAGGATAGGAAAGGAGATAATT GAGACTGAGCATGGAAAAAGTGAGATAAAATTTTATGGAAACTCCTTCATAGCAGGTAATTTGACTTTCTTTGGCACTGA AACACATCAAAAGACCTTCATGTAAAAGACTATATACTTTTTCCACAAATCAAACCTTCGACCAATCTTTTCTCGCTGTA TTAATCGATTTTTTTCTTCATTTCTTAACACATTTTAACATCAGCTGCAGCATAACTCCTATGTTCCTTTTTTTGTGTCT TTTCTTTCAACAAACAGGACCTACTGGGGAAATTGTTTCAATTGCTGATGATAACGAGGAAGCTGTTCTTATTGCTCAAT TTGATTTGGACAAGATCAAATCCATGAGGCATAGTTGGGGGGTGTTCCGCGACCGGCGTCCTGATCTATATAAGGTGCTT TTGACATTAGATGGCAAAAATCCTGTCCAGTGA
CDS sequence (LotjaGi3g1v0177700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAACTTGCGAAAGAGTTAGGCGTGGTCATACCTGTTAGCTTCTTCGAGGAGGCAAACAATGCGCATTATAATTC AATAGCCATAATTGATGCTGATGGAACTGATCTTGGAATTTATAGAAAATCACATATTCCAGATGGACCAGCTATATGCT GGGATCAGTGGTTTCCTGAGGCAGCCCGAGCTATGGTGCTTCAAGGTGCTGAGATTTTATTTTATCCAACTGCTATTGGG TCTGAACCTCAAGATGAAAACATTGACTCTCGTGACCATTGGAAACGAGTACCTCTTGTGGCTTCTAATAGGATAGGAAA GGAGATAATTGAGACTGAGCATGGAAAAAGTGAGATAAAATTTTATGGAAACTCCTTCATAGCAGGACCTACTGGGGAAA TTGTTTCAATTGCTGATGATAACGAGGAAGCTGTTCTTATTGCTCAATTTGATTTGGACAAGATCAAATCCATGAGGCAT AGTTGGGGGGTGTTCCGCGACCGGCGTCCTGATCTATATAAGGTGCTTTTGACATTAGATGGCAAAAATCCTGTCCAGTG A
Protein sequence (LotjaGi3g1v0177700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYRKSHIPDGPAICWDQWFPEAARAMVLQGAEILFYPTAIG SEPQDENIDSRDHWKRVPLVASNRIGKEIIETEHGKSEIKFYGNSFIAGPTGEIVSIADDNEEAVLIAQFDLDKIKSMRH SWGVFRDRRPDLYKVLLTLDGKNPVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 50 | 50 | 2.7E-80 | – | |
| PANTHER | 1 | 50 | 50 | 2.7E-80 | – | |
| Gene3D | 1 | 50 | 50 | 5.8E-16 | ||
| ProSiteProfiles | 1 | 152 | 152 | 38.074 | ||
| Pfam | 2 | 47 | 46 | 1.5E-5 | ||
| SUPERFAMILY | 2 | 176 | 175 | 1.15E-45 | ||
| Pfam | 49 | 159 | 111 | 4.1E-19 | ||
| PANTHER | 49 | 177 | 129 | 2.7E-80 | – | |
| PANTHER | 49 | 177 | 129 | 2.7E-80 | – | |
| Gene3D | 51 | 186 | 136 | 2.6E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nitrogen compound metabolic process | The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen. |
Expression pattern of LotjaGi3g1v0177700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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