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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0178000 |
Transcript ID | LotjaGi3g1v0178000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | senescence regulator (Protein of unknown function, DUF584); TAIR: AT3G15040.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|Q04671|P_HUMAN P protein; TrEMBL-Plants: tr|I1LTX0|I1LTX0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0178000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24756002..24757096) extracted from Lotus japonicus Gifu genome v1.2.
ATCCAATTATCTGCTCACCTCAATCATTCTCATTCATATTCACCTCATCGGTTATACACTCTGTCTGTCCACTTACCTTA GGCCTTAGCTACCTACATTTCTCTCACGCTCCGAACCCGGAACCCGCATGGATCTATACGACCCGAACCGCTTCTTCGGC GTCCCACCCCAAAACCGCACCTCCGACGACGACGACCTCATCGAAGACGACGTCGTTTTCTCCCTCAACGACCTCACCGA ACCCTCCTCCCCCTCCCACCGCCGCAAGGGTTTCGCCTCCGGAATCCTCGCCGCGCTGCCTGGAAACGACGACGCTTCTC CGCACTTCTTCCAAAAGGCTCCGGTTTCCGTTTCTGTTCCTGTGCCTTCCTCCTCGCGCCCCATCCCGAGACCGCGGACG GACCGGACTCCAACTTCGCCGGCCAGGTTCCACCAGTCGGCGCCGGTGAACGTGCCGGTCATGTCGCCGGGGATGATGAA GGCTGCACGGAGGCGTCTTGAGTCTGACGAAGATGAAGGTGATGCAGCGGCGGAGGAGGAGGACGGGGAGATGATGCTGC CTCCGCATGAGTTGGTGGCGAGAAACTCGGCGGTGCTGGCGTGCTCTTGTCTTGAAGGAGTTGGGAGAACGCTGAAAGGG AGAGACCTGCGGCGGGTTCGGAATGCTGTTTTGCGACAAACAGGTTTCCTTTGAATCAAACCTTAACTGCGACTAAATCC CAAATCTGGGTGCATGTGCATCCAAAGGGTGACCAGTACCGGATATTTATGAAAAAAAAAAACCGTTAGATTTTCTATTT TCCCTTTGATTCCCAACATTAAAAACATGTGAATTCATTTGGGAAATGGCAAAAAGCATAAAACCCCAATTTGAATGAAT GTGAAATTGAAGACAAAACAATAATGGTTACTGTGTATATTATTATTGTAGGAAACAAAGCCTTACCACTTTGTTATTGG CTTGTTGGTGTTTGATTTCCCTGATATATATGTATTAGGAGATGATGCTTTGCTACTTTGTAATTGTATGTATTTGTTGT ATTCTTATTCAATGAACAGATATATACTTTTATTTTTCCAAATTTTGAATCTATG
CDS sequence (LotjaGi3g1v0178000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTATACGACCCGAACCGCTTCTTCGGCGTCCCACCCCAAAACCGCACCTCCGACGACGACGACCTCATCGAAGA CGACGTCGTTTTCTCCCTCAACGACCTCACCGAACCCTCCTCCCCCTCCCACCGCCGCAAGGGTTTCGCCTCCGGAATCC TCGCCGCGCTGCCTGGAAACGACGACGCTTCTCCGCACTTCTTCCAAAAGGCTCCGGTTTCCGTTTCTGTTCCTGTGCCT TCCTCCTCGCGCCCCATCCCGAGACCGCGGACGGACCGGACTCCAACTTCGCCGGCCAGGTTCCACCAGTCGGCGCCGGT GAACGTGCCGGTCATGTCGCCGGGGATGATGAAGGCTGCACGGAGGCGTCTTGAGTCTGACGAAGATGAAGGTGATGCAG CGGCGGAGGAGGAGGACGGGGAGATGATGCTGCCTCCGCATGAGTTGGTGGCGAGAAACTCGGCGGTGCTGGCGTGCTCT TGTCTTGAAGGAGTTGGGAGAACGCTGAAAGGGAGAGACCTGCGGCGGGTTCGGAATGCTGTTTTGCGACAAACAGGTTT CCTTTGA
Protein sequence (LotjaGi3g1v0178000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLYDPNRFFGVPPQNRTSDDDDLIEDDVVFSLNDLTEPSSPSHRRKGFASGILAALPGNDDASPHFFQKAPVSVSVPVP SSSRPIPRPRTDRTPTSPARFHQSAPVNVPVMSPGMMKAARRRLESDEDEGDAAAEEEDGEMMLPPHELVARNSAVLACS CLEGVGRTLKGRDLRRVRNAVLRQTGFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 23 | 23 | - | – | |
Pfam | 23 | 188 | 166 | 1.2E-39 | ||
PANTHER | 73 | 188 | 116 | 4.8E-45 | – | |
PANTHER | 73 | 188 | 116 | 4.8E-45 | – | |
MobiDBLite | 76 | 111 | 36 | - | – | |
Coils | 117 | 137 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0178000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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