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IPR007608 is a Senescence regulator S40.
<p>Proteins in this family include AtS40-3 from Arabidopsis thaliana and similar sequences from plants. AtS40-3 is induced during senescence and is also regulated in response to dark treatment, ABA, salicylic acid and pathogen attack [[cite:PUB00057492]]. It also affects the natural variation of cyst nematodes sex ratio and susceptibility to parasitic nematodes, depending on single nucleotide polymorphism (SNPs) between cultivars [[cite:PUB00103614]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Uncharacterized protein TCM_030219 [Theobroma cacao] gi|508781431|gb|EOY28687.1| | 4 | ||
| – | Uncharacterized protein TCM_022158 [Theobroma cacao] gi|508715937|gb|EOY07834.1| | 5 | ||
| – | Uncharacterized protein TCM_030232 [Theobroma cacao] gi|508781453|gb|EOY28709.1| | 5 | ||
| – | Uncharacterized protein TCM_030232 [Theobroma cacao] gi|508781453|gb|EOY28709.1| | 5 | ||
| – | Uncharacterized protein TCM_030219 [Theobroma cacao] gi|508781431|gb|EOY28687.1| | 4 | ||
| – | Uncharacterized protein TCM_022158 [Theobroma cacao] gi|508715937|gb|EOY07834.1| | 5 | ||
| – | Uncharacterized protein TCM_041373 [Theobroma cacao] gi|508786140|gb|EOY33396.1| | 5 | ||
| – | Uncharacterized protein TCM_030232 [Theobroma cacao] gi|508781453|gb|EOY28709.1| | 5 | ||
| – | Uncharacterized protein TCM_030219 [Theobroma cacao] gi|508781431|gb|EOY28687.1| | 5 | ||
| – | Uncharacterized protein TCM_029589 [Theobroma cacao] gi|508780606|gb|EOY27862.1| | 6 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT4G21970.1 senescence regulator (Protein of unknown function, DUF584); TrEMBL-Plants: tr|I3S5C5|I3S5C5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0028500 | 5 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT4G21970.1 senescence regulator (Protein of unknown function, DUF584); TrEMBL-Plants: tr|I3S5C5|I3S5C5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0028500 | 5 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT3G15040.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|B7K970|RUVA_CYAP7 Holliday junction ATP-dependent DNA helicase RuvA; TrEMBL-Plants: tr|V7CZT2|V7CZT2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0673500 | 11 | ||
| – | Senescence regulator; TAIR: AT5G03230.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|Q87EG7|6PGL_XYLFT 6-phosphogluconolactonase; TrEMBL-Plants: tr|I3S5C6|I3S5C6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0691200 | 5 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT3G45210.1 transcription initiation factor TFIID subunit (Protein of unknown function, DUF584); Swiss-Prot: sp|Q55DE2|SDA1_DICDI Protein SDA1 homolog; TrEMBL-Plants: tr|V7BW81|V7BW81_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0163000 | 5 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT3G15040.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|Q04671|P_HUMAN P protein; TrEMBL-Plants: tr|I1LTX0|I1LTX0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0178000 | 6 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT3G15040.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|B4S6P7|DNAK_PROA2 Chaperone protein DnaK; TrEMBL-Plants: tr|I1LTX0|I1LTX0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0475800 | 6 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT4G04630.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|B5EZH9|ARND_SALA4 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; TrEMBL-Plants: tr|K7MJF0|K7MJF0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0014200 | 5 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT1G11700.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|O26342|RFCL_METTH Replication factor C large subunit; TrEMBL-Plants: tr|A0A0L9TTH9|A0A0L9TTH9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0015100 | 4 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT5G03230.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|Q3T904|ATG9A_BOVIN Autophagy-related protein 9A; TrEMBL-Plants: tr|I3T818|I3T818_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0078200 | 5 | ||
| – | Senescence regulator; TAIR: AT4G21970.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|Q5FR06|QUEA_GLUOX S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TrEMBL-Plants: tr|A0A0B2P0N7|A0A0B2P0N7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0158700 | 5 | ||
| – | Senescence regulator; TAIR: AT4G04630.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|A2RUB1|MEIOC_HUMAN Meiosis-specific coiled-coil domain-containing protein MEIOC; TrEMBL-Plants: tr|A0A0L9VFG6|A0A0L9VFG6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0294500 | 5 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT1G11700.1 senescence regulator (Protein of unknown function, DUF584); TrEMBL-Plants: tr|I1M104|I1M104_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0294800 | 5 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT1G29640.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic; TrEMBL-Plants: tr|D7KDV9|D7KDV9_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0314600 | 6 | ||
| – | Senescence regulator (Protein of unknown function, DUF584); TAIR: AT1G29640.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic; TrEMBL-Plants: tr|D7KDV9|D7KDV9_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0314600 | 6 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 4.00 |